Wall clock time and date at job start Tue Mar 31 2020 06:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47358 * 2 1 4 4 C 1.53000 * 109.47073 * 174.24740 * 3 2 1 5 5 H 1.08998 * 109.47207 * 323.13749 * 4 3 2 6 6 C 1.50700 * 109.47014 * 203.13849 * 4 3 2 7 7 O 1.21280 * 120.00037 * 343.53474 * 6 4 3 8 8 N 1.34772 * 120.00172 * 163.53706 * 6 4 3 9 9 C 1.47024 * 125.64705 * 354.19363 * 8 6 4 10 10 C 1.54322 * 107.27350 * 178.96673 * 9 8 6 11 11 C 1.55165 * 102.93860 * 337.80002 * 10 9 8 12 12 H 1.08998 * 111.00294 * 277.39431 * 11 10 9 13 13 N 1.46494 * 111.00161 * 153.57949 * 11 10 9 14 14 C 1.36946 * 120.00113 * 86.73171 * 13 11 10 15 15 H 1.07998 * 119.99760 * 359.72435 * 14 13 11 16 16 C 1.38807 * 120.00039 * 179.72548 * 14 13 11 17 17 N 1.31620 * 120.00017 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00073 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.46980 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47558 * 119.99499 * 18 16 14 21 21 H 1.48507 * 109.46817 * 239.99882 * 18 16 14 22 22 C 1.47421 * 125.65287 * 174.21477 * 8 6 4 23 23 C 1.52999 * 109.46968 * 83.14023 * 4 3 2 24 24 C 1.53002 * 109.47393 * 298.56030 * 23 4 3 25 25 C 1.53003 * 109.47357 * 58.56338 * 23 4 3 26 26 H 1.09006 * 109.47397 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47490 * 300.00312 * 1 2 3 28 28 H 1.09009 * 109.46884 * 60.00320 * 1 2 3 29 29 H 1.09002 * 109.47074 * 239.99379 * 2 1 3 30 30 H 1.08997 * 109.46614 * 120.00302 * 2 1 3 31 31 H 1.09001 * 109.46826 * 54.24679 * 3 2 1 32 32 H 1.09004 * 109.46703 * 294.24508 * 3 2 1 33 33 H 1.08996 * 109.88442 * 59.53910 * 9 8 6 34 34 H 1.09007 * 110.00562 * 298.45101 * 9 8 6 35 35 H 1.08998 * 110.71784 * 219.44213 * 10 9 8 36 36 H 1.08990 * 110.88000 * 96.23509 * 10 9 8 37 37 H 0.97002 * 120.00459 * 266.45085 * 13 11 10 38 38 H 0.97001 * 119.99620 * 180.02562 * 17 16 14 39 39 H 1.09004 * 110.36702 * 85.26432 * 22 8 6 40 40 H 1.09003 * 110.36373 * 322.94758 * 22 8 6 41 41 H 1.08998 * 109.47103 * 178.56430 * 23 4 3 42 42 H 1.09008 * 109.46352 * 74.18105 * 24 23 4 43 43 H 1.09001 * 109.47255 * 194.17896 * 24 23 4 44 44 H 1.08994 * 109.47003 * 314.18740 * 24 23 4 45 45 H 1.08999 * 109.46704 * 54.36268 * 25 23 4 46 46 H 1.09005 * 109.47094 * 174.35556 * 25 23 4 47 47 H 1.08992 * 109.47167 * 294.35991 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5632 1.4448 0.1446 5 1 3.8653 0.6442 0.8198 6 6 4.0126 2.7700 0.7039 7 8 3.2622 3.7225 0.6839 8 7 5.2485 2.8967 1.2263 9 6 6.2115 1.8035 1.4237 10 6 7.4920 2.4232 2.0218 11 6 7.3858 3.9132 1.6018 12 1 7.7434 4.0581 0.5824 13 7 8.1116 4.7755 2.5376 14 6 9.4487 5.0096 2.3567 15 1 9.9691 4.5550 1.5267 16 6 10.1352 5.8312 3.2401 17 7 9.5009 6.3857 4.2514 18 14 11.9589 6.1512 2.9930 19 1 12.4320 5.4170 1.7919 20 1 12.1852 7.6067 2.8048 21 1 12.7096 5.6837 4.1860 22 6 5.8585 4.1543 1.6949 23 6 4.2059 1.2255 -1.2264 24 6 3.7781 -0.1358 -1.7785 25 6 3.7534 2.3294 -2.1843 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5139 0.8900 31 1 1.5950 1.9851 0.8340 32 1 1.7632 1.9256 -0.9371 33 1 6.4392 1.3328 0.4673 34 1 5.8010 1.0645 2.1119 35 1 8.3810 1.9633 1.5902 36 1 7.4990 2.3282 3.1076 37 1 7.6443 5.1839 3.2831 38 1 9.9806 6.9602 4.8685 39 1 5.5683 4.3555 2.7262 40 1 5.5651 4.9820 1.0491 41 1 5.2910 1.2526 -1.1275 42 1 2.7420 -0.0827 -2.1131 43 1 4.4180 -0.4044 -2.6190 44 1 3.8692 -0.8898 -0.9968 45 1 3.9688 3.3031 -1.7442 46 1 4.2875 2.2318 -3.1295 47 1 2.6817 2.2399 -2.3616 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752593879.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:07 Heat of formation + Delta-G solvation = -60.402273 kcal Electronic energy + Delta-G solvation = -23247.902189 eV Core-core repulsion = 20043.448835 eV Total energy + Delta-G solvation = -3204.453354 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.51466 -39.19116 -37.81337 -35.94639 -34.31114 -33.29338 -31.11035 -30.50478 -29.19324 -28.16902 -26.37083 -25.26714 -24.05743 -22.09857 -21.64093 -21.24086 -19.66270 -19.29590 -17.98504 -17.53606 -17.09223 -16.56267 -16.31123 -15.51152 -15.34966 -15.14342 -14.72532 -14.45705 -14.32160 -14.19833 -13.94379 -13.80362 -13.37810 -13.16700 -13.13621 -13.03779 -12.88848 -12.79392 -12.68502 -12.49819 -12.29100 -12.10662 -12.07647 -11.78798 -11.73782 -11.64917 -11.61941 -11.31095 -10.96722 -10.88091 -10.70532 -9.66107 -9.06455 -7.96132 -5.26702 1.48668 1.49541 1.59366 1.60806 1.95121 2.56453 3.34078 3.48223 3.70130 3.71879 3.80842 3.89464 4.04047 4.15750 4.23553 4.25771 4.28728 4.33536 4.38538 4.49277 4.60340 4.61694 4.69507 4.76934 4.82791 4.86075 4.91675 4.96486 5.00063 5.04814 5.13058 5.14233 5.19887 5.22967 5.25483 5.30706 5.40601 5.41132 5.44365 5.52081 5.53561 5.65951 6.24562 6.56514 7.14609 7.31065 8.02203 8.26419 9.27544 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034489 B = 0.003299 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.664865 B = 8486.461969 C = 8726.913220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.134 4.134 3 C -0.102 4.102 4 C -0.090 4.090 5 H 0.113 0.887 6 C 0.525 3.475 7 O -0.589 6.589 8 N -0.614 5.614 9 C 0.107 3.893 10 C -0.144 4.144 11 C 0.167 3.833 12 H 0.061 0.939 13 N -0.730 5.730 14 C -0.238 4.238 15 H 0.082 0.918 16 C -0.076 4.076 17 N -0.971 5.971 18 Si 0.975 3.025 19 H -0.262 1.262 20 H -0.297 1.297 21 H -0.294 1.294 22 C 0.108 3.892 23 C -0.081 4.081 24 C -0.145 4.145 25 C -0.152 4.152 26 H 0.066 0.934 27 H 0.042 0.958 28 H 0.052 0.948 29 H 0.097 0.903 30 H 0.066 0.934 31 H 0.042 0.958 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.061 0.939 37 H 0.373 0.627 38 H 0.251 0.749 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.073 0.927 45 H 0.024 0.976 46 H 0.068 0.932 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.271 -18.901 -12.327 26.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.171 4.171 3 C -0.140 4.140 4 C -0.111 4.111 5 H 0.131 0.869 6 C 0.316 3.684 7 O -0.469 6.469 8 N -0.347 5.347 9 C -0.015 4.015 10 C -0.185 4.185 11 C 0.057 3.943 12 H 0.079 0.921 13 N -0.370 5.370 14 C -0.369 4.369 15 H 0.100 0.900 16 C -0.268 4.268 17 N -0.621 5.621 18 Si 0.804 3.196 19 H -0.186 1.186 20 H -0.224 1.224 21 H -0.221 1.221 22 C -0.016 4.016 23 C -0.100 4.100 24 C -0.202 4.202 25 C -0.209 4.209 26 H 0.085 0.915 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.115 0.885 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.112 0.888 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.205 0.795 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.092 0.908 45 H 0.043 0.957 46 H 0.087 0.913 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.560 -18.424 -12.458 26.049 hybrid contribution 0.828 1.336 0.843 1.783 sum -12.732 -17.089 -11.616 24.270 Atomic orbital electron populations 1.21786 0.95940 1.02046 1.01387 1.22007 0.95979 0.95077 1.04037 1.21528 0.91987 0.98257 1.02236 1.21528 0.97907 0.92824 0.98877 0.86938 1.21175 0.79236 0.91734 0.76246 1.90658 1.53832 1.43200 1.59235 1.48567 1.14818 1.09977 1.61376 1.22244 0.88062 0.89081 1.02117 1.23201 0.97187 0.97081 1.00991 1.21435 0.88651 0.90666 0.93576 0.92110 1.42440 1.07067 1.56556 1.30933 1.19643 0.86065 1.22620 1.08620 0.89994 1.25600 1.02565 1.00700 0.97934 1.69837 1.36879 1.37366 1.18021 0.85057 0.80040 0.77021 0.77519 1.18616 1.22437 1.22072 1.22176 0.93677 0.87186 0.98599 1.21063 1.00121 0.97119 0.91678 1.22098 1.02125 0.94361 1.01594 1.21957 1.02053 0.97303 0.99553 0.91509 0.93911 0.92847 0.88458 0.91577 0.93919 0.91350 0.88754 0.89487 0.89489 0.91999 0.79489 0.94024 0.92993 0.92609 0.90474 0.91034 0.91590 0.90796 0.95714 0.91319 0.91602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 71.98 0.71 -1.33 16 2 C -0.13 -1.78 5.27 30.59 0.16 -1.62 16 3 C -0.10 -2.02 4.00 30.59 0.12 -1.90 16 4 C -0.09 -1.80 1.52 -11.54 -0.02 -1.82 16 5 H 0.11 1.77 7.35 -2.39 -0.02 1.75 16 6 C 0.53 15.85 5.80 87.66 0.51 16.35 16 7 O -0.59 -22.93 15.87 -3.03 -0.05 -22.97 16 8 N -0.61 -18.42 3.33 -811.80 -2.70 -21.12 16 9 C 0.11 2.48 6.16 86.73 0.53 3.01 16 10 C -0.14 -4.38 6.65 31.79 0.21 -4.17 16 11 C 0.17 6.41 3.69 46.39 0.17 6.58 16 12 H 0.06 2.36 8.13 -2.39 -0.02 2.34 16 13 N -0.73 -36.22 5.28 -316.38 -1.67 -37.89 16 14 C -0.24 -12.81 9.98 84.03 0.84 -11.97 16 15 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 16 C -0.08 -4.28 5.50 84.86 0.47 -3.81 16 17 N -0.97 -59.15 13.06 21.65 0.28 -58.87 16 18 Si 0.97 45.32 29.55 68.60 2.03 47.34 16 19 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 20 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 21 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 22 C 0.11 3.99 6.51 86.85 0.57 4.56 16 23 C -0.08 -1.33 2.70 -10.79 -0.03 -1.36 16 24 C -0.15 -1.49 7.52 71.98 0.54 -0.95 16 25 C -0.15 -3.00 8.57 71.98 0.62 -2.38 16 26 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 27 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.10 0.96 4.24 -2.39 -0.01 0.95 16 30 H 0.07 0.81 8.00 -2.39 -0.02 0.80 16 31 H 0.04 1.07 7.53 -2.39 -0.02 1.06 16 32 H 0.07 1.42 5.62 -2.38 -0.01 1.40 16 33 H 0.09 1.68 6.54 -2.39 -0.02 1.66 16 34 H 0.09 1.64 8.08 -2.38 -0.02 1.62 16 35 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.37 20.22 7.71 -92.71 -0.71 19.51 16 38 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 39 H 0.05 2.06 8.00 -2.38 -0.02 2.04 16 40 H 0.06 2.23 8.10 -2.39 -0.02 2.21 16 41 H 0.08 1.27 6.48 -2.39 -0.02 1.25 16 42 H 0.07 0.69 5.86 -2.38 -0.01 0.67 16 43 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.07 0.59 7.62 -2.39 -0.02 0.57 16 45 H 0.02 0.65 6.87 -2.39 -0.02 0.63 16 46 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 47 H 0.07 1.22 6.18 -2.39 -0.01 1.20 16 Total: -1.00 -68.57 357.66 3.52 -65.04 By element: Atomic # 1 Polarization: 29.06 SS G_CDS: 0.23 Total: 29.28 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: 5.41 Total: -0.81 kcal Atomic # 7 Polarization: -113.80 SS G_CDS: -4.09 Total: -117.88 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.05 Total: -22.97 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -68.57 3.52 -65.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752593879.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.641 kcal (2) G-P(sol) polarization free energy of solvation -68.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds