Wall clock time and date at job start Tue Mar 31 2020 05:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46808 * 2 1 4 4 C 1.52998 * 109.46929 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47291 * 299.99819 * 4 3 2 6 6 C 1.52998 * 109.47322 * 60.00147 * 4 3 2 7 7 C 1.52992 * 109.47451 * 59.99853 * 6 4 3 8 8 C 1.50706 * 109.47348 * 179.97438 * 4 3 2 9 9 O 1.21283 * 119.99503 * 359.97438 * 8 4 3 10 10 N 1.34773 * 120.00081 * 179.72561 * 8 4 3 11 11 C 1.46506 * 119.99968 * 180.02562 * 10 8 4 12 12 H 1.09003 * 112.84605 * 334.66171 * 11 10 8 13 13 C 1.53770 * 113.61519 * 105.85657 * 11 10 8 14 14 C 1.54056 * 86.98462 * 89.16506 * 13 11 10 15 15 H 1.08997 * 113.62172 * 139.97611 * 14 13 11 16 16 N 1.46498 * 113.61002 * 270.88530 * 14 13 11 17 17 C 1.36943 * 119.99965 * 252.48609 * 16 14 13 18 18 H 1.07999 * 119.99689 * 0.02562 * 17 16 14 19 19 C 1.38813 * 120.00253 * 179.97438 * 17 16 14 20 20 N 1.31616 * 119.99949 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 119.99687 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47013 * 89.99673 * 21 19 17 23 23 H 1.48503 * 109.47067 * 209.99273 * 21 19 17 24 24 H 1.48495 * 109.47366 * 329.99503 * 21 19 17 25 25 C 1.53776 * 87.07646 * 25.42930 * 14 13 11 26 26 H 1.09002 * 109.46559 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46961 * 299.99496 * 1 2 3 28 28 H 1.08994 * 109.47402 * 59.99882 * 1 2 3 29 29 H 1.09000 * 109.46719 * 240.00048 * 2 1 3 30 30 H 1.08994 * 109.47402 * 120.00118 * 2 1 3 31 31 H 1.09000 * 109.47441 * 60.00491 * 3 2 1 32 32 H 1.09002 * 109.47087 * 299.99937 * 3 2 1 33 33 H 1.09001 * 109.47000 * 300.00701 * 5 4 3 34 34 H 1.09002 * 109.46917 * 59.99921 * 5 4 3 35 35 H 1.08995 * 109.47505 * 180.02562 * 5 4 3 36 36 H 1.09005 * 109.47120 * 180.02562 * 6 4 3 37 37 H 1.09002 * 109.47051 * 299.99537 * 6 4 3 38 38 H 1.09002 * 109.46985 * 60.00287 * 7 6 4 39 39 H 1.09000 * 109.47344 * 180.02562 * 7 6 4 40 40 H 1.09005 * 109.47280 * 300.00296 * 7 6 4 41 41 H 0.96998 * 120.00525 * 359.97438 * 10 8 4 42 42 H 1.09006 * 113.61926 * 203.66271 * 13 11 10 43 43 H 1.09003 * 113.62182 * 334.57060 * 13 11 10 44 44 H 0.96999 * 120.00561 * 72.48800 * 16 14 13 45 45 H 0.96998 * 119.99500 * 180.02562 * 20 19 17 46 46 H 1.08997 * 113.61610 * 220.02731 * 25 14 13 47 47 H 1.09003 * 113.69078 * 89.13253 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0805 0.7212 1.2483 6 6 4.0795 0.7215 -1.2502 7 6 3.5690 1.4429 -2.4991 8 6 4.0723 2.8634 -0.0013 9 8 3.2842 3.7852 -0.0017 10 7 5.3974 3.1097 0.0037 11 6 5.8857 4.4909 0.0036 12 1 5.1726 5.1919 -0.4302 13 6 6.4486 4.9453 1.3606 14 6 7.8111 4.4074 0.8837 15 1 8.6527 5.0419 1.1615 16 7 8.0302 2.9955 1.2072 17 6 8.9172 2.6481 2.1910 18 1 9.4548 3.4151 2.7287 19 6 9.1245 1.3103 2.4980 20 7 9.9766 0.9765 3.4439 21 14 8.1941 -0.0162 1.5684 22 1 8.9766 -0.4255 0.3746 23 1 7.9908 -1.1911 2.4537 24 1 6.8752 0.5134 1.1380 25 6 7.3118 4.6401 -0.5520 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.7175 1.2348 2.1385 34 1 3.7172 -0.3065 1.2483 35 1 5.1705 0.7216 1.2481 36 1 5.1695 0.7212 -1.2504 37 1 3.7163 -0.3062 -1.2502 38 1 3.9324 2.4705 -2.4991 39 1 3.9317 0.9289 -3.3893 40 1 2.4790 1.4429 -2.4987 41 1 6.0278 2.3724 0.0080 42 1 6.4308 6.0262 1.5009 43 1 6.0352 4.4005 2.2094 44 1 7.5472 2.3066 0.7245 45 1 10.1217 0.0417 3.6581 46 1 7.5948 3.8489 -1.2463 47 1 7.5291 5.6371 -0.9351 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752771529.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:16 Heat of formation + Delta-G solvation = -22.830034 kcal Electronic energy + Delta-G solvation = -24187.751362 eV Core-core repulsion = 20984.927263 eV Total energy + Delta-G solvation = -3202.824100 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.53265 -38.68256 -36.63438 -33.81968 -33.30775 -32.25046 -30.65612 -30.33823 -26.64301 -25.23714 -25.05346 -23.95709 -23.21150 -22.23371 -20.72111 -19.49051 -18.56844 -17.59482 -16.50795 -16.02192 -15.67517 -15.08634 -14.95314 -14.61204 -14.33911 -13.87352 -13.73437 -13.55032 -13.22074 -13.11613 -12.80221 -12.40227 -12.29719 -12.13788 -12.01528 -11.90170 -11.87843 -11.74475 -11.31068 -11.06389 -10.96635 -10.93655 -10.85317 -10.57742 -10.37977 -10.30607 -10.03367 -9.83779 -9.63766 -9.37428 -8.99164 -8.65486 -7.40441 -5.87546 -3.24834 2.86955 3.11107 3.25648 3.32679 3.39382 4.44215 4.57887 4.60911 4.76784 4.90410 4.98389 5.02326 5.12217 5.14305 5.22384 5.27627 5.36538 5.40018 5.51159 5.57382 5.62722 5.67660 5.69784 5.74952 5.79884 5.85598 5.89857 5.95275 6.00261 6.02887 6.10234 6.11555 6.15683 6.17505 6.21637 6.34422 6.44166 6.47357 6.60009 6.71196 6.99153 7.77229 7.89179 8.31141 8.47451 9.06812 9.78747 9.96828 11.30274 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015953 B = 0.006231 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.722523 B = 4492.363940 C = 5521.482391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.129 4.129 3 C -0.094 4.094 4 C -0.079 4.079 5 C -0.159 4.159 6 C -0.116 4.116 7 C -0.155 4.155 8 C 0.529 3.471 9 O -0.548 6.548 10 N -0.704 5.704 11 C 0.120 3.880 12 H 0.092 0.908 13 C -0.185 4.185 14 C 0.170 3.830 15 H 0.075 0.925 16 N -0.727 5.727 17 C -0.247 4.247 18 H 0.094 0.906 19 C 0.007 3.993 20 N -0.929 5.929 21 Si 0.877 3.123 22 H -0.283 1.283 23 H -0.288 1.288 24 H -0.270 1.270 25 C -0.168 4.168 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.060 0.940 41 H 0.399 0.601 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.354 0.646 45 H 0.261 0.739 46 H 0.068 0.932 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.378 -0.180 -10.409 17.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.167 4.167 3 C -0.131 4.131 4 C -0.082 4.082 5 C -0.216 4.216 6 C -0.154 4.154 7 C -0.213 4.213 8 C 0.316 3.684 9 O -0.426 6.426 10 N -0.356 5.356 11 C 0.015 3.985 12 H 0.110 0.890 13 C -0.227 4.227 14 C 0.058 3.942 15 H 0.093 0.907 16 N -0.369 5.369 17 C -0.377 4.377 18 H 0.112 0.888 19 C -0.190 4.190 20 N -0.576 5.576 21 Si 0.708 3.292 22 H -0.210 1.210 23 H -0.214 1.214 24 H -0.197 1.197 25 C -0.208 4.208 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.237 0.763 42 H 0.099 0.901 43 H 0.090 0.910 44 H 0.189 0.811 45 H 0.071 0.929 46 H 0.087 0.913 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.719 0.443 -10.205 17.916 hybrid contribution -0.240 -1.402 -0.450 1.491 sum -14.959 -0.958 -10.655 18.391 Atomic orbital electron populations 1.21754 0.95959 1.01281 1.01813 1.21688 0.95702 0.96973 1.02311 1.21448 0.91853 0.96531 1.03296 1.20862 0.97460 0.92469 0.97417 1.22201 1.02996 1.00485 0.95958 1.21659 1.00834 0.99817 0.93084 1.21856 1.01645 1.00630 0.97119 1.20451 0.82168 0.90940 0.74888 1.90639 1.55383 1.46297 1.50270 1.45915 1.06986 1.08480 1.74243 1.21825 0.95115 0.83254 0.98309 0.89005 1.24286 1.00689 1.00457 0.97239 1.21198 0.94748 0.86668 0.91547 0.90691 1.42562 1.50072 1.00580 1.43653 1.19121 1.15174 0.93098 1.10273 0.88829 1.24686 0.99066 0.96708 0.98496 1.69686 1.38088 1.16910 1.32966 0.86779 0.79632 0.82874 0.79866 1.21001 1.21446 1.19727 1.23871 0.95185 1.02350 0.99382 0.92954 0.92773 0.92865 0.91719 0.91606 0.91383 0.91043 0.91905 0.91260 0.90718 0.91668 0.90442 0.92680 0.92529 0.92056 0.76317 0.90105 0.90984 0.81147 0.92924 0.91287 0.88756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 37.16 0.37 -0.97 16 2 C -0.13 -1.29 5.23 -26.73 -0.14 -1.43 16 3 C -0.09 -1.15 3.21 -26.73 -0.09 -1.23 16 4 C -0.08 -1.07 0.43 -155.66 -0.07 -1.14 16 5 C -0.16 -2.26 8.02 37.16 0.30 -1.96 16 6 C -0.12 -1.38 4.54 -26.74 -0.12 -1.50 16 7 C -0.16 -1.73 9.31 37.15 0.35 -1.38 16 8 C 0.53 8.68 5.21 -10.98 -0.06 8.63 16 9 O -0.55 -10.38 15.60 5.56 0.09 -10.29 16 10 N -0.70 -11.56 4.91 -53.02 -0.26 -11.83 16 11 C 0.12 1.92 4.29 -67.12 -0.29 1.63 16 12 H 0.09 1.46 7.50 -51.93 -0.39 1.07 16 13 C -0.18 -3.15 7.70 -25.78 -0.20 -3.35 16 14 C 0.17 3.12 4.57 -66.98 -0.31 2.81 16 15 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 16 N -0.73 -16.10 4.99 -52.50 -0.26 -16.36 16 17 C -0.25 -6.66 10.45 -15.06 -0.16 -6.82 16 18 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 19 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 20 N -0.93 -28.27 13.97 55.49 0.78 -27.49 16 21 Si 0.88 20.39 27.74 -169.99 -4.71 15.67 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.27 -5.45 3.73 56.52 0.21 -5.24 16 25 C -0.17 -2.51 7.58 -25.92 -0.20 -2.70 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.60 6.43 -51.93 -0.33 0.26 16 30 H 0.07 0.65 6.43 -51.93 -0.33 0.32 16 31 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 32 H 0.07 0.90 6.38 -51.93 -0.33 0.57 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.83 6.43 -51.93 -0.33 0.50 16 35 H 0.07 1.21 4.99 -51.93 -0.26 0.95 16 36 H 0.06 0.81 7.58 -51.93 -0.39 0.42 16 37 H 0.08 0.79 6.43 -51.93 -0.33 0.46 16 38 H 0.05 0.70 7.22 -51.93 -0.37 0.32 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.64 6.43 -51.93 -0.33 0.31 16 41 H 0.40 6.73 4.77 -40.82 -0.19 6.53 16 42 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 43 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 44 H 0.35 7.49 3.21 -40.82 -0.13 7.35 16 45 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 46 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 47 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 350.74 15.07 5.29 5.29 Total: -1.00 -30.49 350.74 -7.93 -38.42 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: -8.14 Total: 15.90 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -0.70 Total: -9.31 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: 0.25 Total: -55.68 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.29 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.71 Total: 15.67 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.49 -7.93 -38.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752771529.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.588 kcal (2) G-P(sol) polarization free energy of solvation -30.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds