Wall clock time and date at job start Tue Mar 31 2020 05:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47189 * 2 1 4 4 C 1.53001 * 109.46725 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47600 * 59.99491 * 4 3 2 6 6 C 1.53002 * 109.47027 * 299.99436 * 4 3 2 7 7 C 1.52994 * 109.47302 * 300.00575 * 6 4 3 8 8 C 1.50701 * 109.46866 * 179.97438 * 4 3 2 9 9 O 1.21276 * 119.99961 * 359.97438 * 8 4 3 10 10 N 1.34779 * 119.99810 * 179.97438 * 8 4 3 11 11 C 1.46500 * 119.99895 * 180.02562 * 10 8 4 12 12 H 1.09008 * 112.90540 * 336.24622 * 11 10 8 13 13 C 1.53775 * 113.61656 * 107.50207 * 11 10 8 14 14 C 1.53779 * 87.08438 * 139.98199 * 13 11 10 15 15 H 1.09002 * 113.61731 * 89.11293 * 14 13 11 16 16 N 1.46500 * 113.68825 * 220.00754 * 14 13 11 17 17 C 1.36940 * 119.99935 * 254.05682 * 16 14 13 18 18 H 1.08002 * 119.99799 * 0.02562 * 17 16 14 19 19 C 1.38810 * 119.99860 * 180.02562 * 17 16 14 20 20 N 1.31618 * 120.00306 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99928 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47127 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47271 * 120.00196 * 21 19 17 24 24 H 1.48499 * 109.47059 * 240.00005 * 21 19 17 25 25 C 1.53777 * 113.61534 * 204.99945 * 11 10 8 26 26 H 1.08996 * 109.47341 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46824 * 300.00445 * 1 2 3 28 28 H 1.09003 * 109.46768 * 59.99949 * 1 2 3 29 29 H 1.09002 * 109.46824 * 239.99555 * 2 1 3 30 30 H 1.09003 * 109.46768 * 120.00051 * 2 1 3 31 31 H 1.08991 * 109.47143 * 60.00009 * 3 2 1 32 32 H 1.09003 * 109.46644 * 299.99365 * 3 2 1 33 33 H 1.09000 * 109.47398 * 179.97438 * 5 4 3 34 34 H 1.08996 * 109.47409 * 300.00168 * 5 4 3 35 35 H 1.09003 * 109.46822 * 60.00310 * 5 4 3 36 36 H 1.09004 * 109.47089 * 60.00728 * 6 4 3 37 37 H 1.09000 * 109.47097 * 180.02562 * 6 4 3 38 38 H 1.09004 * 109.47173 * 300.00102 * 7 6 4 39 39 H 1.09000 * 109.47347 * 59.99783 * 7 6 4 40 40 H 1.08996 * 109.47472 * 179.97438 * 7 6 4 41 41 H 0.97002 * 120.00021 * 359.97438 * 10 8 4 42 42 H 1.08993 * 113.61636 * 25.42563 * 13 11 10 43 43 H 1.09008 * 113.61006 * 254.52805 * 13 11 10 44 44 H 0.96998 * 119.99853 * 74.06469 * 16 14 13 45 45 H 0.96998 * 120.00051 * 179.97438 * 20 19 17 46 46 H 1.08997 * 113.61941 * 105.46412 * 25 11 10 47 47 H 1.09009 * 113.68972 * 334.57492 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4423 -0.0006 5 6 4.0796 0.7212 -1.2501 6 6 4.0805 0.7210 1.2484 7 6 3.5710 1.4421 2.4978 8 6 4.0724 2.8631 -0.0013 9 8 3.2844 3.7850 -0.0017 10 7 5.3975 3.1093 -0.0014 11 6 5.8860 4.4905 -0.0014 12 1 5.1609 5.1969 -0.4059 13 6 6.4909 4.9301 1.3422 14 6 7.5737 5.6570 0.5274 15 1 7.3101 6.6822 0.2676 16 7 8.9173 5.5427 1.1001 17 6 9.4860 6.6164 1.7316 18 1 8.9439 7.5474 1.8079 19 6 10.7593 6.5083 2.2738 20 7 11.4202 5.3739 2.1804 21 14 11.5349 7.9728 3.1359 22 1 10.5933 9.1207 3.1054 23 1 11.8350 7.6154 4.5456 24 1 12.7931 8.3467 2.4414 25 6 7.2952 4.6456 -0.5970 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9562 -0.8901 33 1 5.1696 0.7215 -1.2507 34 1 3.7162 -0.3064 -1.2501 35 1 3.7160 1.2351 -2.1399 36 1 3.7172 -0.3067 1.2484 37 1 5.1705 0.7213 1.2481 38 1 3.9343 2.4698 2.4978 39 1 2.4810 1.4421 2.4983 40 1 3.9342 0.9279 3.3876 41 1 6.0279 2.3720 -0.0007 42 1 6.8752 4.1032 1.9394 43 1 5.8483 5.6018 1.9115 44 1 9.4041 4.7065 1.0318 45 1 12.3101 5.2985 2.5590 46 1 7.3020 5.0875 -1.5934 47 1 7.9006 3.7414 -0.5309 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752771530.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:20 Heat of formation + Delta-G solvation = -36.483091 kcal Electronic energy + Delta-G solvation = -22943.234012 eV Core-core repulsion = 19739.817871 eV Total energy + Delta-G solvation = -3203.416141 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.52292 -38.45455 -36.73507 -34.14657 -33.31838 -32.34203 -30.64324 -29.79658 -26.80865 -25.12154 -25.05543 -23.97775 -23.27153 -22.10506 -20.72152 -19.58342 -18.54555 -17.17409 -16.58171 -16.28862 -15.80387 -15.26956 -14.92201 -14.57380 -14.23186 -13.98220 -13.71197 -13.30945 -13.23356 -13.04625 -12.92686 -12.50760 -12.29728 -12.08299 -12.00212 -11.90990 -11.88172 -11.38533 -11.27922 -11.07293 -11.05060 -10.93903 -10.66734 -10.58645 -10.50997 -10.45924 -10.28876 -10.01487 -9.68060 -9.39041 -8.91384 -8.68765 -6.98838 -5.81058 -3.09725 2.77571 3.32942 3.41558 3.47906 3.49762 4.41321 4.49853 4.58378 4.62584 4.85492 4.89267 5.00235 5.07458 5.13273 5.22542 5.25306 5.36421 5.40445 5.42780 5.47630 5.47946 5.56910 5.60720 5.70424 5.78238 5.79966 5.86365 5.89037 5.90871 5.97959 6.01102 6.09216 6.14087 6.15951 6.25409 6.31405 6.33480 6.55280 6.62055 6.78701 7.08100 7.68813 7.70872 8.37385 8.38958 9.49000 10.05790 10.40399 11.41472 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.036011 B = 0.003013 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.344201 B = 9289.607010 C = 9399.511795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C -0.096 4.096 4 C -0.081 4.081 5 C -0.143 4.143 6 C -0.112 4.112 7 C -0.158 4.158 8 C 0.524 3.476 9 O -0.546 6.546 10 N -0.713 5.713 11 C 0.117 3.883 12 H 0.108 0.892 13 C -0.175 4.175 14 C 0.168 3.832 15 H 0.078 0.922 16 N -0.711 5.711 17 C -0.242 4.242 18 H 0.072 0.928 19 C -0.014 4.014 20 N -0.933 5.933 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C -0.158 4.158 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.398 0.602 42 H 0.079 0.921 43 H 0.057 0.943 44 H 0.385 0.615 45 H 0.255 0.745 46 H 0.065 0.935 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.932 -13.369 -5.759 23.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.134 4.134 4 C -0.084 4.084 5 C -0.200 4.200 6 C -0.150 4.150 7 C -0.215 4.215 8 C 0.310 3.690 9 O -0.423 6.423 10 N -0.362 5.362 11 C 0.013 3.987 12 H 0.126 0.874 13 C -0.218 4.218 14 C 0.056 3.944 15 H 0.096 0.904 16 N -0.349 5.349 17 C -0.373 4.373 18 H 0.090 0.910 19 C -0.210 4.210 20 N -0.581 5.581 21 Si 0.738 3.262 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C -0.198 4.198 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.232 0.768 42 H 0.097 0.903 43 H 0.076 0.924 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.084 0.916 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -18.406 -12.501 -5.682 22.964 hybrid contribution 1.029 0.101 0.537 1.165 sum -17.377 -12.399 -5.145 21.958 Atomic orbital electron populations 1.21763 0.95943 1.01328 1.01919 1.21680 0.95785 0.96917 1.02153 1.21462 0.91914 0.96526 1.03453 1.20891 0.97567 0.92677 0.97262 1.21912 1.01237 1.00716 0.96169 1.21627 1.00782 0.99525 0.93055 1.21865 1.01548 1.00985 0.97139 1.20471 0.82504 0.90829 0.75211 1.90667 1.55422 1.46317 1.49924 1.46060 1.06749 1.08964 1.74445 1.22464 0.94692 0.82659 0.98919 0.87445 1.24312 0.99727 1.01264 0.96455 1.21350 0.86173 0.95789 0.91106 0.90367 1.42360 1.12944 1.13926 1.65633 1.19359 0.97847 0.92104 1.28013 0.90957 1.24765 0.97275 0.97242 1.01676 1.69665 1.13259 1.24436 1.50778 0.86109 0.79123 0.81855 0.79073 1.20479 1.21845 1.21841 1.23835 0.94689 1.01409 0.99855 0.92932 0.92763 0.92786 0.91780 0.91672 0.90903 0.91454 0.92109 0.91193 0.92093 0.90661 0.91498 0.92390 0.92202 0.92457 0.76788 0.90260 0.92378 0.78118 0.93515 0.91581 0.90033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.71 16 2 C -0.13 -0.96 5.23 -26.73 -0.14 -1.10 16 3 C -0.10 -0.94 3.21 -26.73 -0.09 -1.03 16 4 C -0.08 -0.80 0.43 -155.66 -0.07 -0.87 16 5 C -0.14 -1.16 8.02 37.16 0.30 -0.86 16 6 C -0.11 -1.00 4.54 -26.73 -0.12 -1.12 16 7 C -0.16 -1.62 9.31 37.15 0.35 -1.27 16 8 C 0.52 7.10 5.22 -10.98 -0.06 7.04 16 9 O -0.55 -9.47 15.58 5.56 0.09 -9.39 16 10 N -0.71 -9.26 5.14 -53.02 -0.27 -9.53 16 11 C 0.12 1.79 4.24 -67.12 -0.28 1.50 16 12 H 0.11 1.73 7.47 -51.92 -0.39 1.34 16 13 C -0.18 -3.10 7.68 -25.92 -0.20 -3.30 16 14 C 0.17 3.29 4.47 -67.12 -0.30 2.99 16 15 H 0.08 1.53 8.11 -51.93 -0.42 1.11 16 16 N -0.71 -17.53 5.41 -52.64 -0.28 -17.82 16 17 C -0.24 -6.68 9.97 -15.06 -0.15 -6.83 16 18 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 20 N -0.93 -27.89 13.06 55.49 0.72 -27.17 16 21 Si 0.91 22.31 29.55 -169.99 -5.02 17.28 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 25 C -0.16 -2.50 7.58 -25.92 -0.20 -2.69 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.44 6.43 -51.93 -0.33 0.10 16 30 H 0.06 0.46 6.43 -51.93 -0.33 0.13 16 31 H 0.07 0.82 6.39 -51.93 -0.33 0.48 16 32 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 33 H 0.06 0.46 7.56 -51.93 -0.39 0.07 16 34 H 0.07 0.46 6.43 -51.93 -0.33 0.12 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.55 6.43 -51.93 -0.33 0.22 16 37 H 0.07 0.58 7.56 -51.93 -0.39 0.19 16 38 H 0.06 0.74 7.22 -51.93 -0.37 0.36 16 39 H 0.06 0.59 6.43 -51.93 -0.33 0.25 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.40 4.39 7.56 -40.82 -0.31 4.08 16 42 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 43 H 0.06 1.05 8.14 -51.92 -0.42 0.62 16 44 H 0.38 9.99 7.91 -40.82 -0.32 9.67 16 45 H 0.25 7.36 8.31 -40.82 -0.34 7.03 16 46 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.08 1.27 8.09 -51.92 -0.42 0.85 16 LS Contribution 364.76 15.07 5.50 5.50 Total: -1.00 -31.25 364.76 -8.33 -39.58 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -8.37 Total: 10.28 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -0.68 Total: -8.73 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: 0.17 Total: -54.52 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.09 Total: -9.39 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.25 -8.33 -39.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752771530.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.098 kcal (2) G-P(sol) polarization free energy of solvation -31.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds