Wall clock time and date at job start Tue Mar 31 2020 06:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52990 * 109.47188 * 2 1 4 4 C 1.53003 * 109.47159 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.46923 * 304.99831 * 4 3 2 6 6 C 1.52997 * 109.47231 * 64.99871 * 4 3 2 7 7 C 1.53002 * 109.47398 * 185.73033 * 6 4 3 8 8 C 1.50698 * 109.47155 * 185.00179 * 4 3 2 9 9 O 1.21279 * 120.00102 * 267.30904 * 8 4 3 10 10 N 1.34778 * 120.00334 * 87.31791 * 8 4 3 11 11 C 1.46496 * 120.00297 * 185.26317 * 10 8 4 12 12 C 1.52998 * 109.47194 * 175.15779 * 11 10 8 13 13 H 1.09003 * 109.87260 * 302.96911 * 12 11 10 14 14 C 1.54328 * 109.88525 * 63.98253 * 12 11 10 15 15 C 1.55151 * 102.94568 * 141.61003 * 14 12 11 16 16 C 1.54913 * 101.57954 * 324.50035 * 15 14 12 17 17 N 1.47017 * 109.88267 * 181.79073 * 12 11 10 18 18 C 1.36937 * 125.65055 * 61.62110 * 17 12 11 19 19 H 1.08001 * 119.99894 * 11.54273 * 18 17 12 20 20 C 1.38812 * 120.00041 * 191.54591 * 18 17 12 21 21 N 1.31613 * 120.00170 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99716 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47368 * 59.99909 * 22 20 18 24 24 H 1.48500 * 109.46836 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.46909 * 299.99941 * 22 20 18 26 26 H 1.09006 * 109.47492 * 59.99810 * 1 2 3 27 27 H 1.09003 * 109.47710 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47430 * 300.00144 * 1 2 3 29 29 H 1.09007 * 109.46986 * 239.99941 * 2 1 3 30 30 H 1.08999 * 109.47272 * 120.00516 * 2 1 3 31 31 H 1.08999 * 109.47458 * 60.00265 * 3 2 1 32 32 H 1.09001 * 109.47497 * 299.99876 * 3 2 1 33 33 H 1.08998 * 109.47483 * 305.73172 * 6 4 3 34 34 H 1.08999 * 109.46949 * 65.73074 * 6 4 3 35 35 H 1.09001 * 109.47275 * 64.63507 * 7 6 4 36 36 H 1.08995 * 109.47363 * 184.63504 * 7 6 4 37 37 H 1.08999 * 109.47061 * 304.63939 * 7 6 4 38 38 H 0.97004 * 119.99820 * 5.25726 * 10 8 4 39 39 H 1.09009 * 109.47079 * 295.15375 * 11 10 8 40 40 H 1.08992 * 109.47140 * 55.15268 * 11 10 8 41 41 H 1.09000 * 110.72006 * 259.97887 * 14 12 11 42 42 H 1.09004 * 110.71553 * 23.06767 * 14 12 11 43 43 H 1.09000 * 111.00630 * 82.57298 * 15 14 12 44 44 H 1.08997 * 111.00537 * 206.42514 * 15 14 12 45 45 H 1.09002 * 110.36769 * 155.84966 * 16 15 14 46 46 H 1.09001 * 110.36855 * 278.05579 * 16 15 14 47 47 H 0.97004 * 119.99847 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9336 0.8528 0.8410 6 6 4.0794 0.8329 -1.3082 7 6 5.6027 0.7014 -1.2503 8 6 4.0724 2.8577 0.1232 9 8 4.3206 3.5025 -0.8735 10 7 4.2460 3.4070 1.3417 11 6 4.6232 4.8175 1.4624 12 6 4.6370 5.2171 2.9392 13 1 3.6617 5.0217 3.3851 14 6 5.7258 4.4203 3.6884 15 6 6.3043 5.4669 4.6769 16 6 6.2254 6.7656 3.8360 17 7 4.9728 6.6426 3.0683 18 6 4.2433 7.6837 2.5593 19 1 3.2495 7.5093 2.1743 20 6 4.7812 8.9632 2.5383 21 7 5.9925 9.1757 3.0070 22 14 3.7856 10.3835 1.8446 23 1 2.5302 10.5349 2.6231 24 1 4.5792 11.6353 1.9358 25 1 3.4563 10.1093 0.4228 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.6347 -0.1524 -1.4475 34 1 3.8019 1.4778 -2.1420 35 1 5.8767 -0.0078 -0.4691 36 1 5.9734 0.3446 -2.2111 37 1 6.0432 1.6735 -1.0291 38 1 4.1212 2.8684 2.1387 39 1 5.6156 4.9660 1.0365 40 1 3.9017 5.4336 0.9259 41 1 5.2868 3.5813 4.2283 42 1 6.4937 4.0728 2.9972 43 1 5.6863 5.5427 5.5716 44 1 7.3365 5.2311 4.9357 45 1 6.1865 7.6381 4.4882 46 1 7.0798 6.8341 3.1627 47 1 6.3682 10.0699 2.9926 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753112563.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:44 Heat of formation + Delta-G solvation = -47.635012 kcal Electronic energy + Delta-G solvation = -23057.936373 eV Core-core repulsion = 19854.036649 eV Total energy + Delta-G solvation = -3203.899724 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.85082 -37.76178 -36.22087 -34.22304 -33.07824 -32.46899 -29.93697 -29.34869 -28.38108 -25.24812 -24.55064 -23.68997 -22.45132 -21.08728 -20.29725 -19.77410 -19.24342 -17.22570 -16.53454 -15.83788 -15.34505 -15.26323 -14.75979 -14.47851 -14.14740 -13.89522 -13.76400 -13.35273 -13.26133 -12.96713 -12.63711 -12.18365 -12.09552 -11.87796 -11.84624 -11.76701 -11.46185 -11.33685 -11.23442 -10.95607 -10.89278 -10.79650 -10.77213 -10.54001 -10.20165 -10.12923 -9.89555 -9.83859 -9.68753 -9.36408 -8.65709 -8.54662 -6.85901 -5.74652 -3.11467 2.93061 3.40748 3.46006 3.46611 3.53484 4.48815 4.55877 4.66353 4.77116 4.93293 5.03921 5.18850 5.30449 5.35206 5.35492 5.40187 5.50726 5.51801 5.60381 5.61387 5.63688 5.68965 5.73889 5.81033 5.93494 5.95548 6.03658 6.06358 6.13267 6.15160 6.23093 6.23645 6.27241 6.46369 6.55336 6.63458 6.73986 6.84276 7.07586 7.53743 7.59377 7.80215 7.86634 8.26671 8.57492 9.18317 9.78965 10.45148 11.36196 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017573 B = 0.003947 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.947247 B = 7092.979432 C = 7559.864443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.109 4.109 4 C -0.107 4.107 5 H 0.086 0.914 6 C -0.108 4.108 7 C -0.154 4.154 8 C 0.511 3.489 9 O -0.542 6.542 10 N -0.725 5.725 11 C 0.109 3.891 12 C 0.152 3.848 13 H 0.037 0.963 14 C -0.127 4.127 15 C -0.148 4.148 16 C 0.170 3.830 17 N -0.590 5.590 18 C -0.233 4.233 19 H 0.076 0.924 20 C -0.002 4.002 21 N -0.918 5.918 22 Si 0.911 3.089 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.283 1.283 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.050 0.950 36 H 0.054 0.946 37 H 0.059 0.941 38 H 0.394 0.606 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.057 0.943 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.079 0.921 46 H 0.023 0.977 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.946 -19.536 -1.821 20.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.147 4.147 4 C -0.128 4.128 5 H 0.105 0.895 6 C -0.146 4.146 7 C -0.211 4.211 8 C 0.297 3.703 9 O -0.419 6.419 10 N -0.376 5.376 11 C -0.016 4.016 12 C 0.044 3.956 13 H 0.055 0.945 14 C -0.165 4.165 15 C -0.187 4.187 16 C 0.045 3.955 17 N -0.314 5.314 18 C -0.361 4.361 19 H 0.093 0.907 20 C -0.199 4.199 21 N -0.564 5.564 22 Si 0.741 3.259 23 H -0.211 1.211 24 H -0.215 1.215 25 H -0.210 1.210 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.227 0.773 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.097 0.903 46 H 0.041 0.959 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.733 -18.753 -2.554 19.509 hybrid contribution -0.477 0.577 -0.030 0.750 sum -5.210 -18.176 -2.583 19.084 Atomic orbital electron populations 1.21779 0.95805 1.01486 1.02031 1.21578 0.95870 0.96386 1.02217 1.21540 0.92580 0.97482 1.03136 1.21412 0.96976 0.93930 1.00502 0.89534 1.21450 0.96053 1.00506 0.96606 1.21797 0.95919 1.02084 1.01348 1.20574 0.77602 0.88645 0.83494 1.90691 1.50606 1.63759 1.36800 1.46204 1.70427 1.13286 1.07647 1.22198 1.00594 0.78819 0.99991 1.21113 0.96219 0.86913 0.91366 0.94540 1.22614 0.98336 0.97265 0.98310 1.23002 0.99218 0.98296 0.98164 1.21520 0.87717 0.93636 0.92609 1.44490 1.26246 0.98490 1.62171 1.18958 0.96465 0.86165 1.34514 0.90658 1.24859 0.96349 0.97862 1.00851 1.69920 1.15067 1.20912 1.50517 0.86214 0.78918 0.81635 0.79113 1.21073 1.21533 1.20980 0.92696 0.92825 0.92649 0.91584 0.91902 0.91367 0.91182 0.91322 0.90716 0.93127 0.92721 0.92209 0.77259 0.92081 0.91468 0.92444 0.91837 0.92291 0.92364 0.90307 0.95928 0.93574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.76 16 2 C -0.12 -0.94 5.70 -26.74 -0.15 -1.10 16 3 C -0.11 -1.08 4.66 -26.73 -0.12 -1.20 16 4 C -0.11 -1.17 2.18 -91.77 -0.20 -1.37 16 5 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 6 C -0.11 -1.16 4.98 -26.73 -0.13 -1.29 16 7 C -0.15 -1.69 9.78 37.16 0.36 -1.32 16 8 C 0.51 7.91 6.04 -10.99 -0.07 7.85 16 9 O -0.54 -10.82 15.52 5.56 0.09 -10.74 16 10 N -0.72 -10.91 5.38 -60.30 -0.32 -11.23 16 11 C 0.11 2.13 5.07 -4.04 -0.02 2.11 16 12 C 0.15 3.02 3.26 -66.95 -0.22 2.80 16 13 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 14 C -0.13 -2.11 5.93 -24.90 -0.15 -2.25 16 15 C -0.15 -2.71 7.09 -24.58 -0.17 -2.89 16 16 C 0.17 4.07 5.47 -2.53 -0.01 4.06 16 17 N -0.59 -14.74 3.13 -162.57 -0.51 -15.25 16 18 C -0.23 -6.43 9.79 -15.06 -0.15 -6.58 16 19 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 20 C 0.00 -0.07 5.47 -17.43 -0.10 -0.16 16 21 N -0.92 -26.82 10.46 55.49 0.58 -26.24 16 22 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 25 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.48 6.45 -51.93 -0.33 0.15 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.58 6.31 -51.93 -0.33 0.25 16 34 H 0.07 0.94 7.65 -51.93 -0.40 0.54 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.81 6.92 -51.93 -0.36 0.46 16 38 H 0.39 4.70 8.14 -40.82 -0.33 4.37 16 39 H 0.06 1.34 8.10 -51.92 -0.42 0.91 16 40 H 0.07 1.50 7.94 -51.93 -0.41 1.09 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 1.04 7.82 -51.93 -0.41 0.63 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.08 2.10 6.70 -51.93 -0.35 1.76 16 46 H 0.02 0.59 8.12 -51.93 -0.42 0.17 16 47 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 366.82 15.07 5.53 5.53 Total: -1.00 -31.52 366.82 -9.23 -40.74 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -8.80 Total: 2.04 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -0.76 Total: -2.11 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: -0.25 Total: -52.72 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.52 -9.23 -40.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753112563.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.890 kcal (2) G-P(sol) polarization free energy of solvation -31.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds