Wall clock time and date at job start Tue Mar 31 2020 06:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52990 * 109.47188 * 2 1 4 4 C 1.53003 * 109.47159 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.46923 * 304.99831 * 4 3 2 6 6 C 1.52997 * 109.47231 * 64.99871 * 4 3 2 7 7 C 1.53002 * 109.47398 * 185.73033 * 6 4 3 8 8 C 1.50698 * 109.47155 * 185.00179 * 4 3 2 9 9 O 1.21279 * 120.00102 * 267.30904 * 8 4 3 10 10 N 1.34778 * 120.00334 * 87.31791 * 8 4 3 11 11 C 1.46496 * 120.00297 * 185.26317 * 10 8 4 12 12 C 1.52998 * 109.47194 * 175.15779 * 11 10 8 13 13 H 1.09003 * 109.87260 * 302.96911 * 12 11 10 14 14 C 1.54328 * 109.88525 * 63.98253 * 12 11 10 15 15 C 1.55151 * 102.94568 * 141.61003 * 14 12 11 16 16 C 1.54913 * 101.57954 * 324.50035 * 15 14 12 17 17 N 1.47017 * 109.88267 * 181.79073 * 12 11 10 18 18 C 1.36937 * 125.65055 * 61.62110 * 17 12 11 19 19 H 1.08001 * 119.99894 * 11.54273 * 18 17 12 20 20 C 1.38812 * 120.00041 * 191.54591 * 18 17 12 21 21 N 1.31613 * 120.00170 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99716 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47368 * 59.99909 * 22 20 18 24 24 H 1.48500 * 109.46836 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.46909 * 299.99941 * 22 20 18 26 26 H 1.09006 * 109.47492 * 59.99810 * 1 2 3 27 27 H 1.09003 * 109.47710 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47430 * 300.00144 * 1 2 3 29 29 H 1.09007 * 109.46986 * 239.99941 * 2 1 3 30 30 H 1.08999 * 109.47272 * 120.00516 * 2 1 3 31 31 H 1.08999 * 109.47458 * 60.00265 * 3 2 1 32 32 H 1.09001 * 109.47497 * 299.99876 * 3 2 1 33 33 H 1.08998 * 109.47483 * 305.73172 * 6 4 3 34 34 H 1.08999 * 109.46949 * 65.73074 * 6 4 3 35 35 H 1.09001 * 109.47275 * 64.63507 * 7 6 4 36 36 H 1.08995 * 109.47363 * 184.63504 * 7 6 4 37 37 H 1.08999 * 109.47061 * 304.63939 * 7 6 4 38 38 H 0.97004 * 119.99820 * 5.25726 * 10 8 4 39 39 H 1.09009 * 109.47079 * 295.15375 * 11 10 8 40 40 H 1.08992 * 109.47140 * 55.15268 * 11 10 8 41 41 H 1.09000 * 110.72006 * 259.97887 * 14 12 11 42 42 H 1.09004 * 110.71553 * 23.06767 * 14 12 11 43 43 H 1.09000 * 111.00630 * 82.57298 * 15 14 12 44 44 H 1.08997 * 111.00537 * 206.42514 * 15 14 12 45 45 H 1.09002 * 110.36769 * 155.84966 * 16 15 14 46 46 H 1.09001 * 110.36855 * 278.05579 * 16 15 14 47 47 H 0.97004 * 119.99847 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9336 0.8528 0.8410 6 6 4.0794 0.8329 -1.3082 7 6 5.6027 0.7014 -1.2503 8 6 4.0724 2.8577 0.1232 9 8 4.3206 3.5025 -0.8735 10 7 4.2460 3.4070 1.3417 11 6 4.6232 4.8175 1.4624 12 6 4.6370 5.2171 2.9392 13 1 3.6617 5.0217 3.3851 14 6 5.7258 4.4203 3.6884 15 6 6.3043 5.4669 4.6769 16 6 6.2254 6.7656 3.8360 17 7 4.9728 6.6426 3.0683 18 6 4.2433 7.6837 2.5593 19 1 3.2495 7.5093 2.1743 20 6 4.7812 8.9632 2.5383 21 7 5.9925 9.1757 3.0070 22 14 3.7856 10.3835 1.8446 23 1 2.5302 10.5349 2.6231 24 1 4.5792 11.6353 1.9358 25 1 3.4563 10.1093 0.4228 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.6347 -0.1524 -1.4475 34 1 3.8019 1.4778 -2.1420 35 1 5.8767 -0.0078 -0.4691 36 1 5.9734 0.3446 -2.2111 37 1 6.0432 1.6735 -1.0291 38 1 4.1212 2.8684 2.1387 39 1 5.6156 4.9660 1.0365 40 1 3.9017 5.4336 0.9259 41 1 5.2868 3.5813 4.2283 42 1 6.4937 4.0728 2.9972 43 1 5.6863 5.5427 5.5716 44 1 7.3365 5.2311 4.9357 45 1 6.1865 7.6381 4.4882 46 1 7.0798 6.8341 3.1627 47 1 6.3682 10.0699 2.9926 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753112563.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:43 Heat of formation + Delta-G solvation = -67.277195 kcal Electronic energy + Delta-G solvation = -23058.788122 eV Core-core repulsion = 19854.036649 eV Total energy + Delta-G solvation = -3204.751473 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.11760 -39.39017 -37.17941 -35.75167 -34.40521 -33.84859 -31.51891 -30.78351 -29.66141 -26.82906 -26.06790 -24.91693 -23.42293 -22.12259 -21.82902 -21.22519 -20.63612 -18.85738 -18.05650 -17.34958 -16.68448 -16.43884 -16.03774 -15.84596 -15.72552 -15.20784 -15.07673 -14.46689 -14.17295 -14.07309 -13.95245 -13.65917 -13.62125 -13.42340 -13.01214 -12.95418 -12.89719 -12.68197 -12.57306 -12.22640 -12.07638 -11.97511 -11.85919 -11.71851 -11.65363 -11.64883 -11.46140 -11.41041 -11.25596 -10.72224 -10.64317 -10.05719 -8.89844 -7.88738 -5.26594 1.42159 1.45792 1.51387 1.68549 2.22754 2.49293 3.29347 3.61943 3.74102 3.83268 3.92996 3.97675 4.00562 4.24505 4.26587 4.33209 4.37214 4.42890 4.50863 4.55513 4.60691 4.71699 4.74414 4.85823 4.90992 4.96147 4.98187 4.99319 5.09517 5.13433 5.15860 5.21923 5.30609 5.34380 5.35145 5.40060 5.45125 5.46487 5.52899 5.58165 5.66525 5.77658 6.22091 6.65481 7.07602 7.35055 7.75081 8.39686 9.20675 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017573 B = 0.003947 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.947247 B = 7092.979432 C = 7559.864443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.117 4.117 3 C -0.107 4.107 4 C -0.095 4.095 5 H 0.122 0.878 6 C -0.107 4.107 7 C -0.153 4.153 8 C 0.507 3.493 9 O -0.593 6.593 10 N -0.710 5.710 11 C 0.130 3.870 12 C 0.148 3.852 13 H 0.050 0.950 14 C -0.113 4.113 15 C -0.133 4.133 16 C 0.170 3.830 17 N -0.613 5.613 18 C -0.241 4.241 19 H 0.075 0.925 20 C -0.060 4.060 21 N -0.946 5.946 22 Si 0.972 3.028 23 H -0.272 1.272 24 H -0.291 1.291 25 H -0.284 1.284 26 H 0.046 0.954 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.101 0.899 34 H 0.046 0.954 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.024 0.976 38 H 0.415 0.585 39 H 0.030 0.970 40 H 0.029 0.971 41 H 0.107 0.893 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.083 0.917 45 H 0.043 0.957 46 H -0.012 1.012 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.025 -23.057 -0.621 23.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.154 4.154 3 C -0.145 4.145 4 C -0.116 4.116 5 H 0.140 0.860 6 C -0.145 4.145 7 C -0.210 4.210 8 C 0.295 3.705 9 O -0.474 6.474 10 N -0.362 5.362 11 C 0.003 3.997 12 C 0.041 3.959 13 H 0.068 0.932 14 C -0.151 4.151 15 C -0.171 4.171 16 C 0.045 3.955 17 N -0.337 5.337 18 C -0.370 4.370 19 H 0.093 0.907 20 C -0.253 4.253 21 N -0.594 5.594 22 Si 0.800 3.200 23 H -0.198 1.198 24 H -0.217 1.217 25 H -0.211 1.211 26 H 0.065 0.935 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.119 0.881 34 H 0.065 0.935 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.043 0.957 38 H 0.252 0.748 39 H 0.048 0.952 40 H 0.047 0.953 41 H 0.125 0.875 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.102 0.898 45 H 0.061 0.939 46 H 0.006 0.994 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.838 -22.338 -1.322 23.126 hybrid contribution -0.162 1.633 -0.444 1.700 sum -6.000 -20.705 -1.767 21.629 Atomic orbital electron populations 1.21795 0.95744 1.02177 1.01588 1.21552 0.95882 0.94528 1.03437 1.21541 0.91552 0.99209 1.02194 1.21462 0.97581 0.90542 1.02033 0.86038 1.21479 0.96100 1.01498 0.95421 1.21793 0.95877 1.00713 1.02636 1.21535 0.76222 0.90283 0.82481 1.90674 1.52653 1.65488 1.38561 1.45950 1.69974 1.11450 1.08829 1.21614 0.97722 0.81082 0.99236 1.21332 0.98151 0.84777 0.91627 0.93222 1.22607 0.97191 0.97595 0.97678 1.22865 1.01327 0.95131 0.97788 1.21341 0.86333 0.95713 0.92080 1.44768 1.26162 1.00363 1.62410 1.19268 0.96818 0.87325 1.33617 0.90738 1.25631 0.97521 1.00292 1.01883 1.70133 1.16508 1.20798 1.51990 0.85260 0.77909 0.78592 0.78257 1.19805 1.21722 1.21092 0.93496 0.91556 0.92848 0.90848 0.90095 0.91385 0.93245 0.88053 0.93477 0.90700 0.92051 0.95694 0.74777 0.95203 0.95270 0.87451 0.91582 0.91082 0.89843 0.93899 0.99410 0.94286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.91 71.98 0.71 -1.16 16 2 C -0.12 -1.37 5.70 30.59 0.17 -1.19 16 3 C -0.11 -1.86 4.66 30.59 0.14 -1.72 16 4 C -0.09 -1.84 2.18 -11.54 -0.03 -1.86 16 5 H 0.12 1.57 8.14 -2.38 -0.02 1.55 16 6 C -0.11 -2.08 4.98 30.59 0.15 -1.92 16 7 C -0.15 -3.07 9.78 71.98 0.70 -2.37 16 8 C 0.51 15.41 6.04 87.66 0.53 15.94 16 9 O -0.59 -24.62 15.52 -3.03 -0.05 -24.67 16 10 N -0.71 -20.43 5.38 -463.07 -2.49 -22.92 16 11 C 0.13 5.17 5.07 86.38 0.44 5.61 16 12 C 0.15 5.74 3.26 45.34 0.15 5.89 16 13 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 14 C -0.11 -3.37 5.93 31.78 0.19 -3.18 16 15 C -0.13 -4.56 7.09 31.99 0.23 -4.34 16 16 C 0.17 8.37 5.47 86.86 0.48 8.84 16 17 N -0.61 -31.26 3.13 -668.25 -2.09 -33.35 16 18 C -0.24 -13.72 9.79 84.03 0.82 -12.90 16 19 H 0.07 4.13 7.83 -2.91 -0.02 4.11 16 20 C -0.06 -3.47 5.47 84.86 0.46 -3.01 16 21 N -0.95 -57.73 10.46 21.65 0.23 -57.50 16 22 Si 0.97 47.12 29.55 68.60 2.03 49.15 16 23 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 24 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 25 H -0.28 -13.70 7.11 99.48 0.71 -13.00 16 26 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 27 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.07 0.77 6.45 -2.38 -0.02 0.76 16 30 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.10 1.33 6.31 -2.39 -0.02 1.31 16 34 H 0.05 1.18 7.65 -2.39 -0.02 1.16 16 35 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.02 0.66 6.92 -2.39 -0.02 0.64 16 38 H 0.42 8.44 8.14 -92.71 -0.75 7.68 16 39 H 0.03 1.36 8.10 -2.38 -0.02 1.34 16 40 H 0.03 1.36 7.94 -2.39 -0.02 1.34 16 41 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.07 1.97 7.82 -2.38 -0.02 1.95 16 43 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 45 H 0.04 2.38 6.70 -2.39 -0.02 2.37 16 46 H -0.01 -0.67 8.12 -2.39 -0.02 -0.69 16 47 H 0.25 14.75 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -74.57 366.82 2.94 -71.62 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.16 Total: 15.05 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: 5.15 Total: 2.62 kcal Atomic # 7 Polarization: -109.42 SS G_CDS: -4.35 Total: -113.77 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.05 Total: -24.67 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -74.57 2.94 -71.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753112563.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.347 kcal (2) G-P(sol) polarization free energy of solvation -74.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds