Wall clock time and date at job start Tue Mar 31 2020 06:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47383 * 2 1 4 4 C 1.52999 * 109.47045 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47297 * 305.00028 * 4 3 2 6 6 C 1.53005 * 109.47091 * 65.00370 * 4 3 2 7 7 C 1.52998 * 109.46729 * 183.37237 * 6 4 3 8 8 C 1.50700 * 109.46758 * 185.00057 * 4 3 2 9 9 O 1.21278 * 120.00061 * 351.08611 * 8 4 3 10 10 N 1.34773 * 119.99894 * 171.09020 * 8 4 3 11 11 C 1.46505 * 120.00210 * 177.17517 * 10 8 4 12 12 C 1.52995 * 109.46889 * 84.78806 * 11 10 8 13 13 H 1.09006 * 109.87685 * 297.49183 * 12 11 10 14 14 C 1.54319 * 109.88200 * 176.31556 * 12 11 10 15 15 C 1.55162 * 102.94327 * 218.38793 * 14 12 11 16 16 C 1.54907 * 101.58172 * 35.50279 * 15 14 12 17 17 N 1.47026 * 109.88622 * 58.50583 * 12 11 10 18 18 C 1.36933 * 125.64845 * 298.39878 * 17 12 11 19 19 H 1.08005 * 120.00215 * 344.03172 * 18 17 12 20 20 C 1.38818 * 120.00166 * 164.03083 * 18 17 12 21 21 N 1.31615 * 119.99962 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00015 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47172 * 5.00849 * 22 20 18 24 24 H 1.48500 * 109.46936 * 125.00785 * 22 20 18 25 25 H 1.48502 * 109.46867 * 245.00551 * 22 20 18 26 26 H 1.09005 * 109.47063 * 60.00175 * 1 2 3 27 27 H 1.09002 * 109.47567 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47102 * 299.99715 * 1 2 3 29 29 H 1.09007 * 109.47226 * 239.99867 * 2 1 3 30 30 H 1.09004 * 109.47591 * 120.00374 * 2 1 3 31 31 H 1.09001 * 109.46769 * 60.00081 * 3 2 1 32 32 H 1.08999 * 109.46764 * 300.00340 * 3 2 1 33 33 H 1.08999 * 109.46886 * 303.36722 * 6 4 3 34 34 H 1.08994 * 109.47281 * 63.36596 * 6 4 3 35 35 H 1.09001 * 109.47670 * 60.44681 * 7 6 4 36 36 H 1.09006 * 109.46876 * 180.44691 * 7 6 4 37 37 H 1.08999 * 109.47046 * 300.44095 * 7 6 4 38 38 H 0.97007 * 120.00398 * 357.17693 * 10 8 4 39 39 H 1.08994 * 109.46728 * 324.79048 * 11 10 8 40 40 H 1.08996 * 109.47135 * 204.78665 * 11 10 8 41 41 H 1.09005 * 110.72174 * 100.02849 * 14 12 11 42 42 H 1.09001 * 110.72294 * 336.74857 * 14 12 11 43 43 H 1.08997 * 111.00554 * 277.42455 * 15 14 12 44 44 H 1.09004 * 111.00216 * 153.57475 * 15 14 12 45 45 H 1.09008 * 110.36794 * 81.82492 * 16 15 14 46 46 H 1.08994 * 110.36948 * 204.04346 * 16 15 14 47 47 H 0.96997 * 120.00367 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9337 0.8528 0.8409 6 6 4.0794 0.8330 -1.3084 7 6 5.6071 0.7557 -1.2738 8 6 4.0724 2.8578 0.1232 9 8 3.2962 3.7861 0.0415 10 7 5.3843 3.0920 0.3246 11 6 5.8821 4.4686 0.3832 12 6 5.7124 5.0123 1.8032 13 1 4.6547 5.0403 2.0654 14 6 6.3178 6.4285 1.8988 15 6 6.9747 6.4315 3.3045 16 6 7.4810 4.9717 3.4143 17 7 6.4410 4.1610 2.7551 18 6 6.1949 2.8345 2.9898 19 1 5.2664 2.3911 2.6614 20 6 7.1388 2.0596 3.6498 21 7 8.2701 2.6000 4.0504 22 14 6.8028 0.2503 3.9705 23 1 5.5253 -0.1387 3.3210 24 1 7.9107 -0.5655 3.4118 25 1 6.7054 0.0168 5.4339 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.6675 -0.1691 -1.4269 34 1 3.7659 1.4561 -2.1459 35 1 5.9204 0.1262 -0.4410 36 1 5.9705 0.3289 -2.2087 37 1 6.0188 1.7570 -1.1474 38 1 5.9989 2.3491 0.4308 39 1 5.3179 5.0889 -0.3131 40 1 6.9375 4.4852 0.1116 41 1 5.5371 7.1867 1.8364 42 1 7.0676 6.5807 1.1225 43 1 6.2393 6.6493 4.0790 44 1 7.8045 7.1371 3.3464 45 1 8.4337 4.8605 2.8962 46 1 7.5829 4.6831 4.4604 47 1 8.9295 2.0587 4.5119 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753112564.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:48 Heat of formation + Delta-G solvation = -39.102346 kcal Electronic energy + Delta-G solvation = -24110.661018 eV Core-core repulsion = 20907.131298 eV Total energy + Delta-G solvation = -3203.529720 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.68475 -37.54211 -35.90619 -34.08808 -32.85112 -32.53267 -29.28834 -29.05808 -28.68206 -25.24146 -24.45374 -23.50166 -22.25339 -20.74167 -20.11466 -19.61307 -19.07491 -16.96238 -16.67587 -15.52187 -15.34230 -15.05423 -14.58628 -14.23047 -14.02033 -13.91769 -13.61244 -13.25869 -12.85758 -12.64242 -12.23317 -12.07583 -11.94854 -11.85844 -11.79963 -11.58670 -11.22874 -11.10909 -10.88741 -10.86973 -10.80774 -10.69008 -10.61904 -10.40311 -10.25609 -10.08776 -9.96667 -9.72375 -9.63647 -9.10060 -8.58779 -8.18158 -6.74845 -5.76956 -3.10412 3.25519 3.32798 3.38208 3.41452 3.89105 4.44598 4.85421 4.95196 5.04090 5.16854 5.24812 5.34641 5.38069 5.50983 5.52938 5.63776 5.66081 5.71357 5.74573 5.84948 5.86023 5.92503 5.95942 5.99442 6.06533 6.13012 6.18057 6.21201 6.27749 6.37027 6.38721 6.39241 6.45206 6.53184 6.58843 6.67882 6.74947 7.11211 7.25115 7.55285 7.64232 7.79598 8.23321 8.30183 8.90923 9.19516 9.81171 10.53455 11.35722 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014037 B = 0.006469 C = 0.005214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.298173 B = 4327.082757 C = 5368.901512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.097 4.097 4 C -0.112 4.112 5 H 0.095 0.905 6 C -0.111 4.111 7 C -0.174 4.174 8 C 0.517 3.483 9 O -0.560 6.560 10 N -0.699 5.699 11 C 0.109 3.891 12 C 0.143 3.857 13 H 0.039 0.961 14 C -0.123 4.123 15 C -0.148 4.148 16 C 0.173 3.827 17 N -0.593 5.593 18 C -0.216 4.216 19 H 0.073 0.927 20 C -0.007 4.007 21 N -0.915 5.915 22 Si 0.898 3.102 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.291 1.291 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.070 0.930 38 H 0.408 0.592 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.056 0.944 44 H 0.056 0.944 45 H 0.025 0.975 46 H 0.065 0.935 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.568 -2.008 -9.348 11.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C -0.135 4.135 4 C -0.134 4.134 5 H 0.113 0.887 6 C -0.148 4.148 7 C -0.232 4.232 8 C 0.303 3.697 9 O -0.439 6.439 10 N -0.350 5.350 11 C -0.017 4.017 12 C 0.034 3.966 13 H 0.057 0.943 14 C -0.161 4.161 15 C -0.187 4.187 16 C 0.048 3.952 17 N -0.318 5.318 18 C -0.345 4.345 19 H 0.090 0.910 20 C -0.204 4.204 21 N -0.562 5.562 22 Si 0.729 3.271 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.218 1.218 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.246 0.754 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.043 0.957 46 H 0.084 0.916 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.979 -1.530 -9.305 11.732 hybrid contribution 0.319 -1.372 0.422 1.471 sum -6.660 -2.902 -8.883 11.476 Atomic orbital electron populations 1.21754 0.96025 1.01172 1.01858 1.21621 0.95729 0.97104 1.02020 1.21366 0.92720 0.96131 1.03244 1.21434 0.97264 0.94589 1.00084 0.88724 1.21488 0.96227 1.01000 0.96119 1.22168 0.95662 1.03298 1.02059 1.20406 0.82480 0.90805 0.76004 1.90616 1.55513 1.45771 1.52021 1.46174 1.08387 1.09638 1.70851 1.21994 0.98100 0.82813 0.98841 1.21367 0.95953 0.89781 0.89459 0.94320 1.22493 0.99331 0.96410 0.97905 1.23000 0.99363 1.00362 0.95990 1.21382 0.90597 0.84618 0.98563 1.44494 1.37973 1.06787 1.42549 1.18990 0.99698 0.83485 1.32373 0.90958 1.24901 0.95971 0.97700 1.01785 1.69940 1.08117 1.34371 1.43788 0.86256 0.77265 0.85569 0.78055 1.20351 1.21691 1.21778 0.92854 0.93060 0.92719 0.91895 0.91991 0.91344 0.91455 0.90968 0.91816 0.92052 0.92566 0.91135 0.75382 0.91977 0.91297 0.92340 0.91998 0.92518 0.92490 0.95675 0.91635 0.93824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.91 37.16 0.37 -1.17 16 2 C -0.13 -1.45 5.69 -26.73 -0.15 -1.60 16 3 C -0.10 -1.35 3.98 -26.73 -0.11 -1.46 16 4 C -0.11 -1.69 2.26 -91.77 -0.21 -1.90 16 5 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 6 C -0.11 -1.37 5.24 -26.73 -0.14 -1.51 16 7 C -0.17 -2.18 8.92 37.16 0.33 -1.84 16 8 C 0.52 9.54 6.78 -10.99 -0.07 9.47 16 9 O -0.56 -11.95 15.72 5.56 0.09 -11.87 16 10 N -0.70 -12.92 2.18 -60.30 -0.13 -13.05 16 11 C 0.11 2.05 5.52 -4.04 -0.02 2.03 16 12 C 0.14 3.00 3.47 -66.96 -0.23 2.77 16 13 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 14 C -0.12 -2.20 6.48 -24.90 -0.16 -2.36 16 15 C -0.15 -2.83 7.09 -24.58 -0.17 -3.00 16 16 C 0.17 4.11 5.39 -2.53 -0.01 4.10 16 17 N -0.59 -14.45 3.13 -162.57 -0.51 -14.96 16 18 C -0.22 -5.62 8.36 -15.06 -0.13 -5.75 16 19 H 0.07 1.87 7.04 -52.48 -0.37 1.50 16 20 C -0.01 -0.18 5.47 -17.43 -0.10 -0.28 16 21 N -0.92 -25.78 10.63 55.49 0.59 -25.19 16 22 Si 0.90 20.98 29.55 -169.99 -5.02 15.95 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.64 6.49 -51.93 -0.34 0.31 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.07 1.07 8.09 -51.93 -0.42 0.65 16 32 H 0.07 0.95 8.13 -51.93 -0.42 0.53 16 33 H 0.07 0.77 6.41 -51.93 -0.33 0.44 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.97 5.17 -51.93 -0.27 0.70 16 38 H 0.41 7.49 5.94 -40.82 -0.24 7.24 16 39 H 0.06 1.13 7.63 -51.93 -0.40 0.73 16 40 H 0.07 1.25 8.10 -51.93 -0.42 0.83 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.06 1.02 7.82 -51.93 -0.41 0.61 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.03 0.64 8.03 -51.92 -0.42 0.22 16 46 H 0.07 1.74 7.03 -51.93 -0.36 1.38 16 47 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 358.98 15.07 5.41 5.41 Total: -1.00 -29.54 358.98 -8.99 -38.52 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -8.61 Total: 7.68 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -0.81 Total: -2.50 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: -0.05 Total: -53.20 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.09 Total: -11.87 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.54 -8.99 -38.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753112564.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.579 kcal (2) G-P(sol) polarization free energy of solvation -29.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds