Wall clock time and date at job start Tue Mar 31 2020 06:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.46818 * 2 1 4 4 C 1.53006 * 109.47016 * 174.79314 * 3 2 1 5 5 H 1.09004 * 109.46812 * 306.42192 * 4 3 2 6 6 C 1.52999 * 109.47034 * 186.42474 * 4 3 2 7 7 C 1.53000 * 109.47209 * 66.33891 * 6 4 3 8 8 C 1.50698 * 109.47269 * 66.42699 * 4 3 2 9 9 O 1.21284 * 119.99837 * 359.97438 * 8 4 3 10 10 N 1.34767 * 120.00107 * 180.02562 * 8 4 3 11 11 C 1.46500 * 120.00292 * 179.97438 * 10 8 4 12 12 C 1.53000 * 109.47166 * 185.01611 * 11 10 8 13 13 H 1.08992 * 109.87732 * 303.32241 * 12 11 10 14 14 C 1.54322 * 109.88427 * 64.34520 * 12 11 10 15 15 C 1.55154 * 102.94619 * 141.61145 * 14 12 11 16 16 C 1.54908 * 101.57907 * 324.49388 * 15 14 12 17 17 N 1.47031 * 109.88165 * 182.14807 * 12 11 10 18 18 C 1.36934 * 125.64709 * 61.61910 * 17 12 11 19 19 H 1.08004 * 119.99964 * 9.51323 * 18 17 12 20 20 C 1.38811 * 119.99922 * 189.50935 * 18 17 12 21 21 N 1.31615 * 120.00281 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99822 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47391 * 60.00145 * 22 20 18 24 24 H 1.48502 * 109.47086 * 180.02562 * 22 20 18 25 25 H 1.48508 * 109.47002 * 300.00000 * 22 20 18 26 26 H 1.09006 * 109.47263 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47136 * 299.99943 * 1 2 3 28 28 H 1.09006 * 109.47724 * 59.99925 * 1 2 3 29 29 H 1.08998 * 109.47136 * 240.00057 * 2 1 3 30 30 H 1.08995 * 109.47327 * 119.99801 * 2 1 3 31 31 H 1.09001 * 109.47534 * 294.78809 * 3 2 1 32 32 H 1.08996 * 109.47864 * 54.79089 * 3 2 1 33 33 H 1.08996 * 109.47111 * 186.33701 * 6 4 3 34 34 H 1.09000 * 109.47697 * 306.33978 * 6 4 3 35 35 H 1.08999 * 109.47117 * 174.45100 * 7 6 4 36 36 H 1.09006 * 109.47092 * 294.45057 * 7 6 4 37 37 H 1.08998 * 109.47297 * 54.44774 * 7 6 4 38 38 H 0.97003 * 120.00453 * 359.97438 * 10 8 4 39 39 H 1.09005 * 109.46789 * 305.01245 * 11 10 8 40 40 H 1.09002 * 109.47279 * 65.01366 * 11 10 8 41 41 H 1.09005 * 110.71878 * 259.97498 * 14 12 11 42 42 H 1.09005 * 110.72261 * 23.06167 * 14 12 11 43 43 H 1.08992 * 111.00859 * 82.56798 * 15 14 12 44 44 H 1.08999 * 111.00327 * 206.42362 * 15 14 12 45 45 H 1.08996 * 110.36986 * 155.84925 * 16 15 14 46 46 H 1.09007 * 110.36734 * 278.06564 * 16 15 14 47 47 H 0.97000 * 120.00230 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5644 1.4445 0.1309 5 1 3.8548 0.8601 1.0040 6 6 4.0605 2.8829 0.2919 7 6 3.5679 3.4458 1.6266 8 6 4.1756 0.8379 -1.1058 9 8 3.4621 0.4423 -2.0033 10 7 5.5149 0.7339 -1.2140 11 6 6.1091 0.1436 -2.4159 12 6 7.6239 0.0304 -2.2331 13 1 8.0446 1.0109 -2.0101 14 6 7.9422 -0.9507 -1.0852 15 6 9.1942 -1.7031 -1.6081 16 6 8.8928 -1.7915 -3.1251 17 7 8.2357 -0.5136 -3.4544 18 6 8.2005 0.0699 -4.6927 19 1 7.8283 1.0776 -4.8044 20 6 8.6434 -0.6337 -5.8043 21 7 9.0966 -1.8618 -5.6682 22 14 8.5960 0.1626 -7.4934 23 1 9.4350 1.3879 -7.4868 24 1 9.1191 -0.7906 -8.5048 25 1 7.1956 0.5233 -7.8315 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3635 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.7548 1.9287 -0.9330 32 1 1.6025 1.9826 0.8396 33 1 5.1502 2.8957 0.2722 34 1 3.6751 3.4937 -0.5244 35 1 4.0015 4.4330 1.7867 36 1 2.4809 3.5250 1.6086 37 1 3.8703 2.7806 2.4354 38 1 6.0855 1.0499 -0.4960 39 1 5.6878 -0.8482 -2.5799 40 1 5.8933 0.7769 -3.2765 41 1 8.1730 -0.4091 -0.1678 42 1 7.1130 -1.6401 -0.9260 43 1 10.1014 -1.1281 -1.4229 44 1 9.2661 -2.6967 -1.1656 45 1 9.8187 -1.8986 -3.6902 46 1 8.2246 -2.6277 -3.3310 47 1 9.4057 -2.3536 -6.4450 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753112565.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:52 Heat of formation + Delta-G solvation = -46.016509 kcal Electronic energy + Delta-G solvation = -23107.031365 eV Core-core repulsion = 19903.201824 eV Total energy + Delta-G solvation = -3203.829541 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.88633 -37.75606 -36.00650 -34.37151 -33.23234 -32.44454 -29.78432 -29.13926 -28.36678 -25.54245 -24.66489 -23.59924 -21.77024 -21.38325 -20.29227 -19.80796 -19.27614 -17.34891 -16.54918 -15.88071 -15.15042 -14.99639 -14.85755 -14.57247 -14.20730 -13.85303 -13.76972 -13.37791 -13.26636 -12.77173 -12.55585 -12.12957 -12.11715 -12.00310 -11.86091 -11.68946 -11.48584 -11.30955 -11.28763 -10.96609 -10.80722 -10.77057 -10.61547 -10.50327 -10.21870 -10.12871 -9.90824 -9.83065 -9.66016 -9.32207 -8.63648 -8.55132 -6.87366 -5.73466 -3.10808 2.93384 3.40583 3.45777 3.46341 3.53454 4.48840 4.56718 4.69151 4.78662 5.05482 5.15897 5.18862 5.27415 5.35058 5.35621 5.41003 5.52211 5.54127 5.57347 5.62838 5.70136 5.78319 5.81277 5.86830 5.89423 5.95320 6.06086 6.08866 6.12964 6.15089 6.24417 6.33487 6.45741 6.46632 6.55260 6.64686 6.74177 6.84584 7.07214 7.54972 7.58586 7.81040 7.85930 8.27379 8.57505 9.18422 9.79144 10.44722 11.36358 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018297 B = 0.003919 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.914100 B = 7143.856236 C = 7559.774346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 C -0.098 4.098 4 C -0.109 4.109 5 H 0.093 0.907 6 C -0.117 4.117 7 C -0.151 4.151 8 C 0.509 3.491 9 O -0.539 6.539 10 N -0.724 5.724 11 C 0.109 3.891 12 C 0.152 3.848 13 H 0.037 0.963 14 C -0.126 4.126 15 C -0.148 4.148 16 C 0.168 3.832 17 N -0.590 5.590 18 C -0.232 4.232 19 H 0.076 0.924 20 C -0.003 4.003 21 N -0.918 5.918 22 Si 0.912 3.088 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.284 1.284 26 H 0.050 0.950 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.394 0.606 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.084 0.916 46 H 0.021 0.979 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.252 6.394 16.394 19.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.170 4.170 3 C -0.136 4.136 4 C -0.130 4.130 5 H 0.111 0.889 6 C -0.155 4.155 7 C -0.208 4.208 8 C 0.295 3.705 9 O -0.416 6.416 10 N -0.375 5.375 11 C -0.016 4.016 12 C 0.044 3.956 13 H 0.054 0.946 14 C -0.164 4.164 15 C -0.187 4.187 16 C 0.043 3.957 17 N -0.314 5.314 18 C -0.360 4.360 19 H 0.094 0.906 20 C -0.200 4.200 21 N -0.565 5.565 22 Si 0.742 3.258 23 H -0.211 1.211 24 H -0.215 1.215 25 H -0.210 1.210 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.100 0.900 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.227 0.773 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.102 0.898 46 H 0.039 0.961 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.667 6.019 15.464 19.204 hybrid contribution 0.210 0.474 -0.599 0.792 sum -9.457 6.493 14.865 18.776 Atomic orbital electron populations 1.21733 0.96258 1.01282 1.01281 1.21656 0.95534 0.96917 1.02846 1.21453 0.92280 0.97632 1.02236 1.21479 0.97347 0.97287 0.96924 0.88859 1.21514 1.00988 0.94300 0.98653 1.21816 1.01466 1.00804 0.96752 1.20596 0.82450 0.78950 0.88516 1.90671 1.60771 1.48869 1.41335 1.46171 1.06518 1.62842 1.21958 1.22201 0.95212 0.98280 0.85928 1.21105 0.89915 0.95914 0.88682 0.94579 1.22600 0.98637 0.98371 0.96775 1.23006 0.96729 0.98762 1.00205 1.21578 0.98334 0.87212 0.88577 1.44499 1.60140 1.22825 1.03959 1.18970 1.37596 0.96880 0.82555 0.90602 1.24834 1.01304 0.95996 0.97874 1.69912 1.47548 1.10238 1.28813 0.86205 0.77863 0.78069 0.83678 1.21090 1.21536 1.21016 0.93056 0.93327 0.92804 0.89955 0.92875 0.91244 0.91592 0.91416 0.91331 0.92542 0.92378 0.92546 0.77270 0.91737 0.91763 0.92482 0.91891 0.92292 0.92392 0.89835 0.96133 0.93588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.91 37.16 0.37 -1.12 16 2 C -0.13 -1.54 5.63 -26.73 -0.15 -1.69 16 3 C -0.10 -1.06 4.23 -26.73 -0.11 -1.18 16 4 C -0.11 -1.17 2.17 -91.77 -0.20 -1.37 16 5 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 6 C -0.12 -1.06 5.34 -26.73 -0.14 -1.20 16 7 C -0.15 -1.08 9.57 37.16 0.36 -0.72 16 8 C 0.51 7.74 6.90 -10.99 -0.08 7.66 16 9 O -0.54 -10.48 14.05 5.55 0.08 -10.40 16 10 N -0.72 -10.74 5.18 -60.29 -0.31 -11.05 16 11 C 0.11 2.11 5.07 -4.04 -0.02 2.09 16 12 C 0.15 3.01 3.22 -66.95 -0.22 2.79 16 13 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 14 C -0.13 -2.09 6.09 -24.90 -0.15 -2.25 16 15 C -0.15 -2.73 7.09 -24.58 -0.17 -2.90 16 16 C 0.17 4.02 5.52 -2.53 -0.01 4.01 16 17 N -0.59 -14.72 3.13 -162.57 -0.51 -15.22 16 18 C -0.23 -6.38 9.79 -15.06 -0.15 -6.53 16 19 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 20 C 0.00 -0.10 5.48 -17.43 -0.10 -0.19 16 21 N -0.92 -26.79 10.38 55.49 0.58 -26.21 16 22 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 1.22 6.19 -51.93 -0.32 0.90 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.87 7.90 -51.93 -0.41 0.46 16 32 H 0.07 0.58 6.46 -51.93 -0.34 0.24 16 33 H 0.07 0.58 7.39 -51.93 -0.38 0.20 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.40 6.74 -51.93 -0.35 0.05 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.39 4.66 7.67 -40.82 -0.31 4.34 16 39 H 0.06 1.41 8.08 -51.93 -0.42 0.99 16 40 H 0.06 1.41 7.93 -51.93 -0.41 1.00 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 1.04 7.81 -51.93 -0.41 0.64 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.08 2.24 6.55 -51.93 -0.34 1.90 16 46 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 364.33 15.07 5.49 5.49 Total: -1.00 -31.14 364.33 -9.21 -40.35 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -8.73 Total: 2.45 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -0.78 Total: -2.60 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: -0.24 Total: -52.49 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.08 Total: -10.40 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.14 -9.21 -40.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753112565.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.670 kcal (2) G-P(sol) polarization free energy of solvation -31.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds