Wall clock time and date at job start Tue Mar 31 2020 06:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.46900 * 2 1 4 4 C 1.52996 * 109.47185 * 185.26197 * 3 2 1 5 5 H 1.08998 * 109.47609 * 54.71385 * 4 3 2 6 6 C 1.53010 * 109.46711 * 294.71712 * 4 3 2 7 7 C 1.53004 * 109.47059 * 297.25461 * 6 4 3 8 8 C 1.50699 * 109.47395 * 174.72310 * 4 3 2 9 9 O 1.21284 * 119.99555 * 359.97438 * 8 4 3 10 10 N 1.34771 * 120.00472 * 179.97438 * 8 4 3 11 11 C 1.46500 * 120.00313 * 179.97438 * 10 8 4 12 12 C 1.52995 * 109.47188 * 184.60618 * 11 10 8 13 13 H 1.09000 * 109.87621 * 54.55757 * 12 11 10 14 14 C 1.54324 * 109.88440 * 293.38291 * 12 11 10 15 15 C 1.55153 * 102.94651 * 218.39215 * 14 12 11 16 16 C 1.54914 * 101.57951 * 35.49674 * 15 14 12 17 17 N 1.47026 * 109.88444 * 175.57522 * 12 11 10 18 18 C 1.36939 * 125.64678 * 298.39332 * 17 12 11 19 19 H 1.07999 * 119.99941 * 347.38892 * 18 17 12 20 20 C 1.38806 * 120.00046 * 167.38818 * 18 17 12 21 21 N 1.31616 * 120.00091 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00160 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46899 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.46903 * 119.99967 * 22 20 18 25 25 H 1.48496 * 109.47158 * 239.99913 * 22 20 18 26 26 H 1.09003 * 109.47122 * 299.99428 * 1 2 3 27 27 H 1.08994 * 109.47871 * 59.99861 * 1 2 3 28 28 H 1.09007 * 109.47187 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47122 * 240.00572 * 2 1 3 30 30 H 1.08996 * 109.47362 * 120.00115 * 2 1 3 31 31 H 1.09001 * 109.46999 * 65.25770 * 3 2 1 32 32 H 1.09003 * 109.47076 * 305.26346 * 3 2 1 33 33 H 1.08997 * 109.47068 * 57.25462 * 6 4 3 34 34 H 1.09004 * 109.46818 * 177.25091 * 6 4 3 35 35 H 1.09006 * 109.46716 * 185.41587 * 7 6 4 36 36 H 1.08996 * 109.46776 * 305.41237 * 7 6 4 37 37 H 1.08999 * 109.46831 * 65.41950 * 7 6 4 38 38 H 0.96999 * 119.99520 * 359.97438 * 10 8 4 39 39 H 1.09000 * 109.47052 * 64.60271 * 11 10 8 40 40 H 1.09003 * 109.46849 * 304.60553 * 11 10 8 41 41 H 1.09000 * 110.72126 * 100.02159 * 14 12 11 42 42 H 1.09000 * 110.71750 * 336.75437 * 14 12 11 43 43 H 1.08997 * 111.00339 * 277.42610 * 15 14 12 44 44 H 1.08997 * 111.00974 * 153.57394 * 15 14 12 45 45 H 1.08997 * 110.36647 * 81.83373 * 16 15 14 46 46 H 1.08997 * 110.36593 * 204.04082 * 16 15 14 47 47 H 0.96999 * 120.00668 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5641 1.4447 -0.1323 5 1 3.8529 0.8775 -1.0171 6 6 4.1847 0.8024 1.1101 7 6 3.8361 1.6373 2.3440 8 6 4.0552 2.8635 -0.2626 9 8 3.2638 3.7824 -0.2513 10 7 5.3736 3.1111 -0.3917 11 6 5.8509 4.4904 -0.5189 12 6 7.3608 4.4869 -0.7654 13 1 7.5941 3.8625 -1.6278 14 6 8.0954 3.9570 0.4842 15 6 9.3577 4.8565 0.5528 16 6 8.8002 6.2133 0.0547 17 7 7.8325 5.8596 -0.9996 18 6 7.4376 6.6748 -2.0266 19 1 6.8850 6.2652 -2.8592 20 6 7.7476 8.0275 -1.9975 21 7 8.4216 8.5265 -0.9831 22 14 7.2096 9.1394 -3.3988 23 1 6.4726 8.3398 -4.4101 24 1 6.3230 10.2073 -2.8709 25 1 8.4049 9.7551 -4.0291 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 1.7555 1.9285 0.9333 32 1 1.6016 1.9829 -0.8391 33 1 3.7921 -0.2071 1.2317 34 1 5.2677 0.7596 0.9944 35 1 4.3563 1.2353 3.2135 36 1 4.1435 2.6704 2.1822 37 1 2.7602 1.6007 2.5152 38 1 6.0065 2.3762 -0.4004 39 1 5.6338 5.0361 0.3993 40 1 5.3472 4.9733 -1.3563 41 1 8.3736 2.9113 0.3535 42 1 7.4815 4.0853 1.3757 43 1 10.1376 4.4866 -0.1127 44 1 9.7250 4.9369 1.5759 45 1 8.2999 6.7394 0.8678 46 1 9.6032 6.8259 -0.3551 47 1 8.6386 9.4717 -0.9629 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753112566.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:56 Heat of formation + Delta-G solvation = -46.369633 kcal Electronic energy + Delta-G solvation = -23159.540029 eV Core-core repulsion = 19955.695176 eV Total energy + Delta-G solvation = -3203.844853 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.92193 -37.76562 -36.31821 -34.24704 -33.03461 -32.44131 -29.71331 -29.09696 -28.45994 -25.49089 -24.65846 -23.70978 -22.79660 -20.93443 -20.21910 -19.66337 -18.98811 -16.96798 -16.44547 -16.11399 -15.84937 -15.09890 -14.88268 -14.39452 -14.06803 -13.90435 -13.68642 -13.56308 -13.17587 -12.76430 -12.71500 -12.17904 -12.06884 -11.93938 -11.87675 -11.74100 -11.40694 -11.33362 -11.11758 -11.04470 -10.93914 -10.80636 -10.69879 -10.50257 -10.20041 -10.08183 -9.89303 -9.84453 -9.70133 -9.37219 -8.65948 -8.54044 -6.84909 -5.75582 -3.12144 2.96536 3.39603 3.46344 3.48355 3.53049 4.48675 4.58204 4.68136 4.76797 4.97230 5.00222 5.11522 5.23749 5.34562 5.40236 5.45663 5.48424 5.52250 5.57250 5.63131 5.66590 5.73323 5.80433 5.81191 5.87531 5.92896 6.03311 6.06407 6.13096 6.16486 6.18650 6.23910 6.37188 6.46403 6.55484 6.63528 6.75198 6.84212 7.07886 7.53172 7.60238 7.80125 7.87118 8.26114 8.58207 9.18142 9.78681 10.45126 11.35802 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021182 B = 0.003906 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.586259 B = 7165.906109 C = 8145.821355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.103 4.103 4 C -0.110 4.110 5 H 0.093 0.907 6 C -0.114 4.114 7 C -0.157 4.157 8 C 0.512 3.488 9 O -0.544 6.544 10 N -0.724 5.724 11 C 0.109 3.891 12 C 0.152 3.848 13 H 0.037 0.963 14 C -0.126 4.126 15 C -0.148 4.148 16 C 0.171 3.829 17 N -0.590 5.590 18 C -0.231 4.231 19 H 0.077 0.923 20 C -0.003 4.003 21 N -0.917 5.917 22 Si 0.911 3.089 23 H -0.279 1.279 24 H -0.289 1.289 25 H -0.290 1.290 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.394 0.606 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.057 0.943 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.023 0.977 46 H 0.076 0.924 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.986 -18.641 4.864 20.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.141 4.141 4 C -0.131 4.131 5 H 0.111 0.889 6 C -0.152 4.152 7 C -0.214 4.214 8 C 0.298 3.702 9 O -0.421 6.421 10 N -0.375 5.375 11 C -0.016 4.016 12 C 0.044 3.956 13 H 0.055 0.945 14 C -0.164 4.164 15 C -0.187 4.187 16 C 0.046 3.954 17 N -0.314 5.314 18 C -0.360 4.360 19 H 0.094 0.906 20 C -0.200 4.200 21 N -0.563 5.563 22 Si 0.741 3.259 23 H -0.204 1.204 24 H -0.216 1.216 25 H -0.217 1.217 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.227 0.773 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.042 0.958 46 H 0.095 0.905 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.509 -17.688 4.798 19.805 hybrid contribution 0.003 0.375 -0.702 0.796 sum -7.506 -17.313 4.096 19.309 Atomic orbital electron populations 1.21764 0.95916 1.01291 1.02010 1.21587 0.95871 0.96875 1.01859 1.21459 0.92571 0.96369 1.03655 1.21442 0.97625 0.93968 1.00101 0.88908 1.21525 1.00443 0.99481 0.93726 1.21860 1.01781 1.00527 0.97275 1.20546 0.82538 0.91004 0.76143 1.90701 1.54822 1.46540 1.50038 1.46160 1.07133 1.10152 1.74052 1.22198 0.96991 0.80503 1.01919 1.21121 0.90169 0.89349 0.94993 0.94548 1.22610 0.97706 0.98132 0.97977 1.23006 0.96548 0.99249 0.99910 1.21490 0.92738 0.90891 0.90278 1.44504 1.46992 1.10428 1.29477 1.19044 1.31230 0.88669 0.97022 0.90568 1.24881 1.00560 0.96586 0.97965 1.69941 1.43267 1.12631 1.30478 0.86063 0.77879 0.80771 0.81181 1.20382 1.21606 1.21715 0.92738 0.92696 0.92967 0.92133 0.91882 0.90999 0.91191 0.90848 0.91580 0.92621 0.92332 0.92311 0.77286 0.92202 0.91300 0.92442 0.91839 0.92311 0.92368 0.95844 0.90542 0.93679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 2 C -0.12 -1.02 5.57 -26.73 -0.15 -1.17 16 3 C -0.10 -1.12 3.87 -26.73 -0.10 -1.22 16 4 C -0.11 -1.19 2.50 -91.77 -0.23 -1.42 16 5 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 6 C -0.11 -1.01 5.41 -26.72 -0.14 -1.15 16 7 C -0.16 -1.61 9.30 37.16 0.35 -1.27 16 8 C 0.51 7.92 5.67 -10.99 -0.06 7.85 16 9 O -0.54 -10.92 15.91 5.55 0.09 -10.83 16 10 N -0.72 -10.85 5.31 -60.30 -0.32 -11.17 16 11 C 0.11 2.13 5.09 -4.04 -0.02 2.10 16 12 C 0.15 3.00 3.22 -66.95 -0.22 2.79 16 13 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 14 C -0.13 -2.08 6.07 -24.90 -0.15 -2.23 16 15 C -0.15 -2.71 7.09 -24.58 -0.17 -2.88 16 16 C 0.17 4.08 5.45 -2.53 -0.01 4.07 16 17 N -0.59 -14.70 3.13 -162.58 -0.51 -15.21 16 18 C -0.23 -6.39 9.73 -15.06 -0.15 -6.54 16 19 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 20 C 0.00 -0.08 5.47 -17.43 -0.10 -0.18 16 21 N -0.92 -26.80 10.50 55.49 0.58 -26.22 16 22 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.47 6.77 -51.93 -0.35 0.11 16 31 H 0.07 0.85 6.37 -51.93 -0.33 0.52 16 32 H 0.07 0.88 7.95 -51.93 -0.41 0.47 16 33 H 0.07 0.53 6.57 -51.93 -0.34 0.19 16 34 H 0.07 0.53 7.64 -51.93 -0.40 0.14 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.76 6.94 -51.93 -0.36 0.40 16 37 H 0.06 0.59 6.66 -51.93 -0.35 0.24 16 38 H 0.39 4.69 7.71 -40.82 -0.31 4.37 16 39 H 0.06 1.29 8.04 -51.93 -0.42 0.87 16 40 H 0.07 1.56 7.86 -51.93 -0.41 1.15 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.06 1.03 7.78 -51.93 -0.40 0.63 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.02 0.61 8.10 -51.93 -0.42 0.19 16 46 H 0.08 2.04 6.78 -51.93 -0.35 1.68 16 47 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 362.79 15.07 5.47 5.47 Total: -1.00 -31.61 362.79 -9.14 -40.74 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -8.63 Total: 2.00 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -0.79 Total: -2.08 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: -0.25 Total: -52.60 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.61 -9.14 -40.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753112566.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.627 kcal (2) G-P(sol) polarization free energy of solvation -31.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds