Wall clock time and date at job start Tue Mar 31 2020 06:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47166 * 2 1 4 4 C 1.52997 * 109.47306 * 179.97438 * 3 2 1 5 5 H 1.09003 * 115.54797 * 29.28309 * 4 3 2 6 6 C 1.52998 * 117.49994 * 243.60489 * 4 3 2 7 7 C 1.53002 * 60.03436 * 252.50211 * 6 4 3 8 8 H 1.08994 * 117.50193 * 107.50253 * 7 6 4 9 9 C 1.50698 * 117.49331 * 252.52484 * 7 6 4 10 10 O 1.21281 * 120.00496 * 68.61157 * 9 7 6 11 11 N 1.34779 * 119.99886 * 248.60195 * 9 7 6 12 12 C 1.46498 * 120.00101 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.47086 * 180.02562 * 12 11 9 14 14 N 1.46507 * 109.46905 * 180.02562 * 13 12 11 15 15 C 1.36935 * 119.99538 * 90.00670 * 14 13 12 16 16 H 1.08007 * 119.99152 * 217.57547 * 15 14 13 17 17 C 1.38810 * 120.00540 * 37.57621 * 15 14 13 18 18 N 1.31616 * 119.99798 * 21.42408 * 17 15 14 19 19 Si 1.86801 * 120.00032 * 201.42377 * 17 15 14 20 20 H 1.48498 * 109.47316 * 59.99992 * 19 17 15 21 21 H 1.48504 * 109.46947 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47059 * 299.99797 * 19 17 15 23 23 C 1.46493 * 119.99937 * 269.99675 * 14 13 12 24 24 C 1.53005 * 109.46924 * 95.31708 * 23 14 13 25 25 C 1.52999 * 109.47282 * 180.02562 * 24 23 14 26 26 H 1.08995 * 109.47470 * 300.00432 * 1 2 3 27 27 H 1.09000 * 109.46766 * 60.00154 * 1 2 3 28 28 H 1.08992 * 109.46746 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47633 * 240.00094 * 2 1 3 30 30 H 1.08994 * 109.47014 * 119.99478 * 2 1 3 31 31 H 1.09005 * 109.47195 * 59.99355 * 3 2 1 32 32 H 1.09007 * 109.46880 * 299.99816 * 3 2 1 33 33 H 1.08998 * 117.50103 * 0.02562 * 6 4 3 34 34 H 1.08996 * 117.49738 * 144.99586 * 6 4 3 35 35 H 0.96999 * 119.99713 * 0.02562 * 11 9 7 36 36 H 1.08994 * 109.47477 * 300.00376 * 12 11 9 37 37 H 1.09006 * 109.46811 * 60.00503 * 12 11 9 38 38 H 1.09000 * 109.47521 * 300.00275 * 13 12 11 39 39 H 1.08999 * 109.47116 * 60.00811 * 13 12 11 40 40 H 0.97000 * 120.00099 * 180.02562 * 18 17 15 41 41 H 1.09005 * 109.47639 * 215.30949 * 23 14 13 42 42 H 1.08999 * 109.48003 * 335.31788 * 23 14 13 43 43 H 1.09010 * 109.46800 * 299.99486 * 24 23 14 44 44 H 1.08993 * 109.47376 * 59.99467 * 24 23 14 45 45 H 1.09002 * 109.46909 * 299.99216 * 25 24 23 46 46 H 1.08994 * 109.47425 * 59.99971 * 25 24 23 47 47 H 1.09003 * 109.47218 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 4.0403 0.5847 -0.4801 6 6 4.2759 2.0461 1.2165 7 6 4.2771 2.7951 -0.1177 8 1 3.6524 3.6848 -0.1959 9 6 5.5705 2.8387 -0.8899 10 8 6.0130 1.8260 -1.3895 11 7 6.2354 4.0031 -1.0255 12 6 7.4924 4.0457 -1.7767 13 6 8.0375 5.4753 -1.7783 14 7 9.2943 5.5179 -2.5300 15 6 9.2785 5.7668 -3.8764 16 1 9.9690 5.2526 -4.5287 17 6 8.3753 6.6798 -4.4031 18 7 7.8403 7.5985 -3.6271 19 14 7.9191 6.6046 -6.2129 20 1 7.3118 5.2838 -6.5159 21 1 6.9432 7.6803 -6.5225 22 1 9.1391 6.7898 -7.0390 23 6 10.5677 5.2945 -1.8412 24 6 10.9692 3.8242 -1.9758 25 6 12.2989 3.5906 -1.2559 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6767 1.9563 -0.8901 33 1 3.6504 2.4427 2.0161 34 1 5.2107 1.5852 1.5358 35 1 5.8816 4.8130 -0.6258 36 1 8.2183 3.3810 -1.3084 37 1 7.3137 3.7235 -2.8026 38 1 7.3118 6.1404 -2.2464 39 1 8.2164 5.7970 -0.7523 40 1 7.2088 8.2364 -3.9950 41 1 11.3378 5.9236 -2.2877 42 1 10.4594 5.5463 -0.7862 43 1 10.1992 3.1949 -1.5291 44 1 11.0776 3.5722 -3.0307 45 1 13.0691 4.2198 -1.7021 46 1 12.1901 3.8423 -0.2010 47 1 12.5847 2.5431 -1.3514 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753147561.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:20 Heat of formation + Delta-G solvation = -25.979513 kcal Electronic energy + Delta-G solvation = -22234.506667 eV Core-core repulsion = 19031.545995 eV Total energy + Delta-G solvation = -3202.960671 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -39.71114 -37.31057 -36.35918 -34.18134 -33.96467 -32.86562 -30.80750 -28.51578 -27.46488 -25.56501 -24.39929 -22.79487 -22.08291 -20.91690 -20.60135 -20.23568 -19.60587 -17.21648 -16.50051 -15.53218 -15.36886 -15.11821 -14.89797 -14.41874 -14.27991 -14.06621 -13.69639 -13.44699 -13.04642 -12.81237 -12.75187 -12.68474 -12.26294 -12.12656 -11.57315 -11.51366 -11.46622 -11.20428 -11.16946 -11.01219 -10.93723 -10.72948 -10.45188 -10.36156 -10.29094 -10.09954 -10.03520 -9.87327 -9.73417 -9.40877 -8.55319 -8.41745 -6.62359 -5.83987 -3.42786 2.80063 3.35492 3.41299 3.45568 3.52774 3.86441 4.44776 4.52922 4.70627 4.77809 4.92323 4.98455 5.12756 5.24841 5.28420 5.35171 5.48842 5.53853 5.60456 5.62466 5.66887 5.68919 5.76847 5.84507 5.89874 6.03612 6.04269 6.07285 6.13374 6.24701 6.28333 6.28842 6.43233 6.54613 6.62922 6.66886 6.92577 6.97974 7.03698 7.18763 7.54477 7.79565 7.98902 8.47520 8.64966 9.14167 9.76149 10.34094 11.16047 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015064 B = 0.003607 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.342305 B = 7760.639810 C = 8982.980115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.090 4.090 4 C -0.120 4.120 5 H 0.117 0.883 6 C -0.150 4.150 7 C -0.188 4.188 8 H 0.121 0.879 9 C 0.535 3.465 10 O -0.550 6.550 11 N -0.716 5.716 12 C 0.097 3.903 13 C 0.138 3.862 14 N -0.580 5.580 15 C -0.261 4.261 16 H 0.061 0.939 17 C 0.014 3.986 18 N -0.888 5.888 19 Si 0.897 3.103 20 H -0.282 1.282 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.148 3.852 24 C -0.145 4.145 25 C -0.146 4.146 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.398 0.602 36 H 0.051 0.949 37 H 0.063 0.937 38 H 0.098 0.902 39 H 0.028 0.972 40 H 0.255 0.745 41 H 0.046 0.954 42 H 0.034 0.966 43 H 0.052 0.948 44 H 0.058 0.942 45 H 0.049 0.951 46 H 0.046 0.954 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.367 -8.977 10.512 16.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.127 4.127 4 C -0.139 4.139 5 H 0.135 0.865 6 C -0.188 4.188 7 C -0.209 4.209 8 H 0.139 0.861 9 C 0.320 3.680 10 O -0.429 6.429 11 N -0.366 5.366 12 C -0.028 4.028 13 C 0.010 3.990 14 N -0.300 5.300 15 C -0.391 4.391 16 H 0.079 0.921 17 C -0.187 4.187 18 N -0.530 5.530 19 Si 0.726 3.274 20 H -0.208 1.208 21 H -0.216 1.216 22 H -0.206 1.206 23 C 0.022 3.978 24 C -0.185 4.185 25 C -0.204 4.204 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.120 0.880 34 H 0.116 0.884 35 H 0.231 0.769 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.116 0.884 39 H 0.047 0.953 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.052 0.948 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.068 0.932 46 H 0.065 0.935 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -9.109 -9.497 10.086 16.580 hybrid contribution -0.425 0.440 -0.815 1.019 sum -9.533 -9.057 9.271 16.089 Atomic orbital electron populations 1.21781 0.95967 1.01536 1.01756 1.21502 0.95541 0.96621 1.02329 1.21243 0.92103 0.97241 1.02148 1.22431 0.94463 0.95809 1.01158 0.86528 1.23065 1.02978 1.02371 0.90344 1.22362 0.98196 0.98548 1.01825 0.86098 1.19621 0.84563 0.83646 0.80131 1.90666 1.68866 1.34195 1.49167 1.46067 1.25328 1.10175 1.55028 1.22452 0.82781 1.02111 0.95434 1.21058 0.91304 0.92110 0.94497 1.43600 0.98963 1.81641 1.05751 1.18979 1.19697 1.17815 0.82595 0.92128 1.25179 1.01288 0.94490 0.97701 1.69985 1.31795 1.15677 1.35515 0.86467 0.78286 0.77357 0.85292 1.20788 1.21567 1.20598 1.20933 0.89156 0.92785 0.94969 1.22191 0.95654 1.00415 1.00282 1.21721 0.98364 1.00270 1.00088 0.92836 0.92733 0.92825 0.91773 0.91870 0.91719 0.91394 0.88048 0.88443 0.76902 0.93110 0.91837 0.88402 0.95342 0.93474 0.93588 0.94774 0.92961 0.92357 0.93194 0.93480 0.93815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.12 -1.02 5.89 -26.73 -0.16 -1.17 16 3 C -0.09 -0.82 5.50 -26.73 -0.15 -0.96 16 4 C -0.12 -1.37 5.25 -90.58 -0.48 -1.85 16 5 H 0.12 1.56 7.60 -51.93 -0.39 1.17 16 6 C -0.15 -1.58 9.88 -26.73 -0.26 -1.85 16 7 C -0.19 -2.37 5.91 -91.73 -0.54 -2.91 16 8 H 0.12 1.29 8.14 -51.93 -0.42 0.87 16 9 C 0.53 9.24 7.61 -10.99 -0.08 9.15 16 10 O -0.55 -11.68 16.26 5.56 0.09 -11.59 16 11 N -0.72 -12.33 5.56 -60.29 -0.33 -12.67 16 12 C 0.10 2.02 6.00 -4.04 -0.02 2.00 16 13 C 0.14 3.08 5.45 -4.04 -0.02 3.06 16 14 N -0.58 -14.11 2.43 -173.23 -0.42 -14.54 16 15 C -0.26 -7.03 9.45 -15.06 -0.14 -7.17 16 16 H 0.06 1.64 7.92 -52.48 -0.42 1.23 16 17 C 0.01 0.37 4.95 -17.43 -0.09 0.29 16 18 N -0.89 -24.76 11.47 55.49 0.64 -24.13 16 19 Si 0.90 21.49 29.60 -169.99 -5.03 16.45 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 23 C 0.15 3.10 5.72 -4.04 -0.02 3.08 16 24 C -0.15 -2.71 6.23 -26.73 -0.17 -2.87 16 25 C -0.15 -2.20 9.91 37.16 0.37 -1.84 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.51 7.87 -51.93 -0.41 0.10 16 32 H 0.07 0.64 8.14 -51.92 -0.42 0.21 16 33 H 0.10 0.84 8.03 -51.93 -0.42 0.42 16 34 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.40 5.80 8.47 -40.82 -0.35 5.45 16 36 H 0.05 1.08 6.64 -51.93 -0.34 0.73 16 37 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 38 H 0.10 2.45 5.52 -51.93 -0.29 2.17 16 39 H 0.03 0.59 7.86 -51.93 -0.41 0.19 16 40 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 41 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 42 H 0.03 0.67 7.83 -51.93 -0.41 0.26 16 43 H 0.05 1.00 6.64 -51.92 -0.34 0.66 16 44 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 380.94 15.07 5.74 5.74 Total: -1.00 -30.30 380.94 -9.54 -39.84 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -8.82 Total: 4.67 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -1.40 Total: -3.78 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: -0.12 Total: -51.33 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.09 Total: -11.59 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.30 -9.54 -39.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753147561.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.860 kcal (2) G-P(sol) polarization free energy of solvation -30.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds