Wall clock time and date at job start Tue Mar 31 2020 05:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46762 * 2 1 4 4 C 1.53001 * 109.47090 * 180.02562 * 3 2 1 5 5 C 1.50703 * 109.47294 * 180.02562 * 4 3 2 6 6 O 1.21282 * 119.99665 * 359.97438 * 5 4 3 7 7 N 1.34770 * 119.99774 * 179.97438 * 5 4 3 8 8 C 1.46497 * 120.00778 * 5.17879 * 7 5 4 9 9 C 1.53003 * 109.47280 * 275.26137 * 8 7 5 10 10 C 1.52997 * 109.47162 * 179.97438 * 9 8 7 11 11 C 1.46507 * 119.99996 * 185.18012 * 7 5 4 12 12 H 1.09009 * 110.88390 * 10.37761 * 11 7 5 13 13 C 1.55155 * 111.00745 * 246.49738 * 11 7 5 14 14 C 1.54324 * 102.94161 * 277.38903 * 13 11 7 15 15 N 1.47028 * 107.27140 * 337.80517 * 14 13 11 16 16 C 1.36930 * 125.65123 * 178.92063 * 15 14 13 17 17 H 1.07994 * 120.00457 * 185.60074 * 16 15 14 18 18 C 1.38818 * 119.99901 * 5.60410 * 16 15 14 19 19 N 1.31621 * 119.99938 * 5.89387 * 18 16 15 20 20 Si 1.86800 * 120.00123 * 185.90258 * 18 16 15 21 21 H 1.48503 * 109.46858 * 84.99339 * 20 18 16 22 22 H 1.48492 * 109.47058 * 204.99363 * 20 18 16 23 23 H 1.48496 * 109.46854 * 324.99560 * 20 18 16 24 24 C 1.47430 * 108.69946 * 358.94051 * 15 14 13 25 25 H 1.08998 * 109.46781 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47021 * 300.00069 * 1 2 3 27 27 H 1.09003 * 109.47305 * 59.99993 * 1 2 3 28 28 H 1.08996 * 109.47072 * 240.00486 * 2 1 3 29 29 H 1.08995 * 109.47501 * 119.99717 * 2 1 3 30 30 H 1.08996 * 109.47409 * 60.00168 * 3 2 1 31 31 H 1.08999 * 109.47434 * 299.99608 * 3 2 1 32 32 H 1.08999 * 109.47505 * 59.99684 * 4 3 2 33 33 H 1.09003 * 109.46987 * 300.00013 * 4 3 2 34 34 H 1.09005 * 109.46786 * 35.25306 * 8 7 5 35 35 H 1.08999 * 109.47606 * 155.25595 * 8 7 5 36 36 H 1.09005 * 109.46532 * 299.99324 * 9 8 7 37 37 H 1.08999 * 109.47244 * 59.99235 * 9 8 7 38 38 H 1.08994 * 109.47413 * 179.97438 * 10 9 8 39 39 H 1.09001 * 109.47026 * 299.99842 * 10 9 8 40 40 H 1.08999 * 109.47238 * 59.99755 * 10 9 8 41 41 H 1.09002 * 110.71877 * 35.74994 * 13 11 7 42 42 H 1.08999 * 110.72229 * 158.84693 * 13 11 7 43 43 H 1.08994 * 109.88316 * 97.22237 * 14 13 11 44 44 H 1.08998 * 109.88398 * 218.39143 * 14 13 11 45 45 H 0.96994 * 119.99974 * 179.97438 * 19 18 16 46 46 H 1.08996 * 110.36867 * 265.29228 * 24 15 14 47 47 H 1.09004 * 110.36486 * 142.96825 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0722 2.8635 0.0000 6 8 3.2840 3.7853 0.0004 7 7 5.3972 3.1097 0.0001 8 6 6.3484 2.0015 -0.1149 9 6 6.6027 1.4018 1.2696 10 6 7.5956 0.2440 1.1493 11 6 5.8866 4.4859 0.1153 12 1 5.0752 5.1664 0.3739 13 6 6.5948 4.9354 -1.1900 14 6 8.0161 4.3562 -1.0291 15 7 8.2398 4.1413 0.4081 16 6 9.3739 3.6186 0.9699 17 1 9.4074 3.4159 2.0301 18 6 10.4807 3.3491 0.1766 19 7 10.4833 3.7024 -1.0913 20 14 11.9664 2.4851 0.9084 21 1 11.7554 1.0157 0.8652 22 1 13.1781 2.8344 0.1244 23 1 12.1465 2.9181 2.3174 24 6 7.0406 4.5815 1.1441 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9564 -0.8900 32 1 3.9330 0.9289 -0.8908 33 1 3.9337 0.9287 0.8891 34 1 5.9364 1.2358 -0.7723 35 1 7.2869 2.3696 -0.5294 36 1 7.0147 2.1675 1.9270 37 1 5.6642 1.0337 1.6840 38 1 7.7771 -0.1829 2.1356 39 1 7.1832 -0.5215 0.4920 40 1 8.5341 0.6118 0.7347 41 1 6.1011 4.5089 -2.0632 42 1 6.6240 6.0229 -1.2580 43 1 8.0927 3.4085 -1.5619 44 1 8.7503 5.0624 -1.4169 45 1 11.2568 3.5144 -1.6456 46 1 7.1608 5.6098 1.4849 47 1 6.8507 3.9204 1.9898 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753312618.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:57 Heat of formation + Delta-G solvation = -25.940090 kcal Electronic energy + Delta-G solvation = -24121.436205 eV Core-core repulsion = 20918.477243 eV Total energy + Delta-G solvation = -3202.958962 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.99613 -37.65399 -35.33487 -34.86927 -32.94791 -31.60766 -30.45443 -29.10387 -27.65659 -25.72908 -24.91005 -23.95610 -21.53331 -21.05697 -20.27272 -20.08784 -18.41731 -16.98132 -16.88411 -15.97183 -15.65656 -14.70070 -14.61103 -14.24759 -14.00383 -13.84497 -13.64478 -13.42572 -12.96062 -12.60272 -12.38716 -12.19843 -11.96228 -11.91388 -11.61600 -11.39897 -11.24847 -11.14107 -11.10415 -11.05714 -10.93434 -10.89466 -10.66042 -10.49435 -10.29221 -10.16570 -9.99194 -9.78637 -9.62698 -9.19693 -8.68759 -8.11942 -6.85833 -5.75117 -3.10084 2.97209 3.35266 3.41937 3.42533 3.43291 4.45478 4.69266 4.88092 4.88281 5.12714 5.25571 5.36574 5.38335 5.43244 5.47609 5.52184 5.57404 5.67861 5.71696 5.72232 5.78408 5.83673 5.86764 5.93019 5.99677 6.02978 6.18555 6.22929 6.23175 6.31024 6.35029 6.39979 6.47195 6.54946 6.63065 6.69269 6.84469 6.89685 7.18168 7.43654 7.60462 7.77968 7.93530 8.19962 8.56913 9.16278 9.76724 10.43253 11.35062 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023823 B = 0.004785 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.066716 B = 5849.686158 C = 6591.010290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.103 4.103 4 C -0.140 4.140 5 C 0.510 3.490 6 O -0.558 6.558 7 N -0.587 5.587 8 C 0.094 3.906 9 C -0.131 4.131 10 C -0.146 4.146 11 C 0.123 3.877 12 H 0.095 0.905 13 C -0.155 4.155 14 C 0.172 3.828 15 N -0.599 5.599 16 C -0.222 4.222 17 H 0.076 0.924 18 C -0.005 4.005 19 N -0.919 5.919 20 Si 0.905 3.095 21 H -0.288 1.288 22 H -0.292 1.292 23 H -0.283 1.283 24 C 0.123 3.877 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.056 0.944 35 H 0.127 0.873 36 H 0.078 0.922 37 H 0.043 0.957 38 H 0.047 0.953 39 H 0.043 0.957 40 H 0.070 0.930 41 H 0.060 0.940 42 H 0.067 0.933 43 H 0.036 0.964 44 H 0.057 0.943 45 H 0.252 0.748 46 H 0.029 0.971 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.775 -6.873 1.361 14.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.141 4.141 4 C -0.180 4.180 5 C 0.298 3.702 6 O -0.437 6.437 7 N -0.318 5.318 8 C -0.028 4.028 9 C -0.169 4.169 10 C -0.204 4.204 11 C 0.019 3.981 12 H 0.113 0.887 13 C -0.194 4.194 14 C 0.048 3.952 15 N -0.326 5.326 16 C -0.350 4.350 17 H 0.094 0.906 18 C -0.202 4.202 19 N -0.567 5.567 20 Si 0.736 3.264 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.003 4.003 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.074 0.926 35 H 0.145 0.855 36 H 0.096 0.904 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.054 0.946 44 H 0.076 0.924 45 H 0.062 0.938 46 H 0.046 0.954 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.947 -6.439 1.282 14.517 hybrid contribution 1.030 -0.522 0.321 1.199 sum -11.917 -6.961 1.602 13.894 Atomic orbital electron populations 1.21757 0.95913 1.01301 1.01925 1.21552 0.95893 0.96904 1.01941 1.21364 0.93234 0.96191 1.03339 1.21770 0.97379 0.94631 1.04243 1.20692 0.82133 0.91428 0.75908 1.90634 1.55218 1.46683 1.51174 1.47886 1.05219 1.07723 1.70941 1.22098 0.95874 0.87701 0.97155 1.21913 0.98170 0.98671 0.98173 1.21645 1.00625 0.97281 1.00812 1.22222 0.96386 0.82429 0.97095 0.88670 1.23247 0.99094 1.00487 0.96606 1.21236 0.90103 0.98546 0.85350 1.44528 1.12942 1.73641 1.01479 1.18941 0.89305 1.33845 0.92918 0.90627 1.24749 0.97724 1.01613 0.96073 1.69950 1.29996 1.51237 1.05490 0.86247 0.82642 0.79497 0.78061 1.21503 1.21830 1.20832 1.21946 0.86845 0.97503 0.94030 0.92954 0.92740 0.92744 0.92058 0.92051 0.91424 0.91442 0.89297 0.88960 0.92583 0.85491 0.90369 0.93809 0.93408 0.93823 0.91054 0.92088 0.91442 0.94648 0.92450 0.93756 0.95381 0.93468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 37.16 0.37 -0.91 16 2 C -0.13 -1.16 5.93 -26.73 -0.16 -1.32 16 3 C -0.10 -1.20 4.50 -26.73 -0.12 -1.32 16 4 C -0.14 -1.76 4.37 -27.88 -0.12 -1.88 16 5 C 0.51 8.43 7.63 -10.99 -0.08 8.35 16 6 O -0.56 -10.84 15.42 5.56 0.09 -10.75 16 7 N -0.59 -10.03 2.52 -163.67 -0.41 -10.44 16 8 C 0.09 1.56 4.32 -4.04 -0.02 1.55 16 9 C -0.13 -2.06 6.01 -26.73 -0.16 -2.22 16 10 C -0.15 -2.22 9.91 37.16 0.37 -1.85 16 11 C 0.12 2.26 3.61 -65.78 -0.24 2.03 16 12 H 0.10 1.76 7.12 -51.92 -0.37 1.39 16 13 C -0.16 -2.93 6.56 -24.90 -0.16 -3.09 16 14 C 0.17 3.90 4.34 -3.06 -0.01 3.88 16 15 N -0.60 -13.83 2.19 -170.07 -0.37 -14.20 16 16 C -0.22 -5.62 10.27 -15.06 -0.15 -5.77 16 17 H 0.08 1.89 7.83 -52.49 -0.41 1.48 16 18 C -0.01 -0.13 5.46 -17.43 -0.10 -0.23 16 19 N -0.92 -25.37 10.43 55.49 0.58 -24.79 16 20 Si 0.90 20.99 29.56 -169.99 -5.02 15.97 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 C 0.12 2.46 6.06 -2.53 -0.02 2.45 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 31 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 32 H 0.09 1.01 7.28 -51.93 -0.38 0.63 16 33 H 0.09 1.07 6.34 -51.93 -0.33 0.74 16 34 H 0.06 0.82 6.71 -51.93 -0.35 0.47 16 35 H 0.13 2.57 3.73 -51.93 -0.19 2.38 16 36 H 0.08 1.41 5.64 -51.93 -0.29 1.12 16 37 H 0.04 0.61 6.31 -51.93 -0.33 0.28 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.04 0.87 6.27 -51.93 -0.33 0.54 16 44 H 0.06 1.49 7.06 -51.93 -0.37 1.12 16 45 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 46 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.05 0.93 6.01 -51.93 -0.31 0.62 16 LS Contribution 354.71 15.07 5.35 5.35 Total: -1.00 -28.06 354.71 -8.69 -36.75 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -8.28 Total: 2.47 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -0.61 Total: -0.34 kcal Atomic # 7 Polarization: -49.23 SS G_CDS: -0.21 Total: -49.43 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.06 -8.69 -36.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753312618.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.807 kcal (2) G-P(sol) polarization free energy of solvation -28.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds