Wall clock time and date at job start Tue Mar 31 2020 05:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47018 * 2 1 4 4 C 1.52996 * 109.46815 * 180.02562 * 3 2 1 5 5 C 1.50706 * 109.47015 * 180.02562 * 4 3 2 6 6 O 1.21278 * 119.99614 * 359.97438 * 5 4 3 7 7 N 1.34776 * 120.00078 * 180.02562 * 5 4 3 8 8 C 1.46501 * 119.99876 * 359.97438 * 7 5 4 9 9 C 1.53003 * 109.46918 * 270.00155 * 8 7 5 10 10 C 1.53004 * 109.46807 * 180.02562 * 9 8 7 11 11 C 1.46502 * 119.99871 * 179.97438 * 7 5 4 12 12 H 1.09002 * 110.64129 * 179.29424 * 11 7 5 13 13 C 1.55157 * 110.86875 * 302.54237 * 11 7 5 14 14 C 1.54909 * 101.57958 * 153.93745 * 13 11 7 15 15 N 1.47426 * 104.83381 * 322.98989 * 14 13 11 16 16 C 1.36939 * 125.64917 * 204.16150 * 15 14 13 17 17 H 1.08004 * 119.99851 * 179.97438 * 16 15 14 18 18 C 1.38815 * 120.00106 * 359.96353 * 16 15 14 19 19 N 1.31618 * 119.99789 * 359.97438 * 18 16 15 20 20 Si 1.86791 * 120.00098 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47403 * 59.99350 * 20 18 16 22 22 H 1.48502 * 109.47306 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.47124 * 299.99690 * 20 18 16 24 24 C 1.47018 * 108.70104 * 24.12870 * 15 14 13 25 25 H 1.09004 * 109.47134 * 300.00166 * 1 2 3 26 26 H 1.08998 * 109.47491 * 59.99913 * 1 2 3 27 27 H 1.09006 * 109.47411 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47306 * 239.99862 * 2 1 3 29 29 H 1.09002 * 109.47408 * 119.99591 * 2 1 3 30 30 H 1.08994 * 109.47195 * 59.99794 * 3 2 1 31 31 H 1.09002 * 109.46697 * 300.00026 * 3 2 1 32 32 H 1.08994 * 109.47680 * 59.99757 * 4 3 2 33 33 H 1.09002 * 109.47237 * 299.99362 * 4 3 2 34 34 H 1.08998 * 109.47414 * 30.00436 * 8 7 5 35 35 H 1.08999 * 109.46411 * 150.00739 * 8 7 5 36 36 H 1.08998 * 109.47308 * 300.00346 * 9 8 7 37 37 H 1.08997 * 109.47106 * 60.00230 * 9 8 7 38 38 H 1.09002 * 109.46765 * 299.99870 * 10 9 8 39 39 H 1.08997 * 109.47369 * 60.00062 * 10 9 8 40 40 H 1.08998 * 109.46840 * 180.02562 * 10 9 8 41 41 H 1.09000 * 111.00495 * 272.01128 * 13 11 7 42 42 H 1.08997 * 111.00429 * 35.86706 * 13 11 7 43 43 H 1.08998 * 110.36917 * 204.14700 * 14 13 11 44 44 H 1.09003 * 110.36973 * 81.82417 * 14 13 11 45 45 H 0.96996 * 119.99991 * 179.97438 * 19 18 16 46 46 H 1.08998 * 109.88222 * 239.52595 * 24 15 14 47 47 H 1.09005 * 110.01447 * 118.43174 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0723 2.8634 0.0000 6 8 3.2842 3.7851 0.0004 7 7 5.3974 3.1096 -0.0009 8 6 6.3493 1.9961 -0.0020 9 6 6.6818 1.6080 1.4402 10 6 7.6765 0.4455 1.4390 11 6 5.8857 4.4909 -0.0009 12 1 6.9754 4.5132 0.0108 13 6 5.3337 5.2723 -1.2224 14 6 5.3646 6.7299 -0.6989 15 7 4.9923 6.6279 0.7240 16 6 4.4408 7.6288 1.4784 17 1 4.2024 7.4534 2.5171 18 6 4.1882 8.8690 0.9082 19 7 4.4793 9.0830 -0.3575 20 14 3.4351 10.2341 1.9370 21 1 4.3289 10.5412 3.0826 22 1 3.2678 11.4497 1.1005 23 1 2.1104 9.7969 2.4462 24 6 5.3106 5.2733 1.1985 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 3.9329 0.9288 -0.8908 33 1 3.9336 0.9286 0.8892 34 1 5.9087 1.1418 -0.5158 35 1 7.2615 2.2986 -0.5163 36 1 7.1225 2.4623 1.9540 37 1 5.7696 1.3057 1.9545 38 1 7.2361 -0.4090 0.9251 39 1 8.5886 0.7482 0.9248 40 1 7.9130 0.1687 2.4664 41 1 5.9850 5.1543 -2.0884 42 1 4.3151 4.9628 -1.4564 43 1 4.6411 7.3419 -1.2374 44 1 6.3661 7.1481 -0.7998 45 1 4.3025 9.9494 -0.7560 46 1 4.4057 4.7850 1.5601 47 1 6.0499 5.3222 1.9980 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753312619.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:02 Heat of formation + Delta-G solvation = -26.600313 kcal Electronic energy + Delta-G solvation = -23546.842756 eV Core-core repulsion = 20343.855164 eV Total energy + Delta-G solvation = -3202.987591 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.04902 -36.93801 -35.86709 -35.23591 -32.97150 -31.78290 -30.47141 -28.95533 -27.30830 -26.03227 -24.89861 -23.80260 -21.90312 -21.30847 -20.46392 -20.01223 -18.32782 -16.90656 -16.59031 -15.92991 -15.80347 -14.77698 -14.57525 -14.52353 -14.11642 -13.77437 -13.74621 -13.48986 -13.19854 -12.78696 -12.43169 -12.29517 -12.12169 -11.97776 -11.68696 -11.56871 -11.47007 -11.23128 -11.13059 -11.01685 -10.88970 -10.83435 -10.73031 -10.65763 -10.55759 -10.34646 -10.03088 -9.70719 -9.43511 -8.96706 -8.50749 -8.19283 -6.65164 -5.50344 -2.90250 3.02230 3.25279 3.49859 3.53280 3.55289 4.57356 4.62812 4.77409 4.83131 4.86887 4.91680 5.09738 5.16283 5.27029 5.30924 5.42630 5.47889 5.49766 5.55578 5.63168 5.65553 5.70958 5.77090 5.79621 5.83703 5.87230 5.89070 5.93536 6.00138 6.07003 6.18112 6.23363 6.36834 6.42227 6.64293 6.71157 6.73319 6.87278 7.31455 7.63205 7.77081 7.78809 8.00748 8.51611 8.63417 9.37071 9.98491 10.64122 11.53759 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014592 B = 0.004806 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.382878 B = 5825.161661 C = 7022.581797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.106 4.106 4 C -0.139 4.139 5 C 0.502 3.498 6 O -0.507 6.507 7 N -0.609 5.609 8 C 0.111 3.889 9 C -0.145 4.145 10 C -0.149 4.149 11 C 0.135 3.865 12 H 0.085 0.915 13 C -0.154 4.154 14 C 0.158 3.842 15 N -0.596 5.596 16 C -0.213 4.213 17 H 0.074 0.926 18 C -0.014 4.014 19 N -0.925 5.925 20 Si 0.913 3.087 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.286 1.286 24 C 0.134 3.866 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.051 0.949 42 H 0.079 0.921 43 H 0.106 0.894 44 H 0.008 0.992 45 H 0.250 0.750 46 H 0.038 0.962 47 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.561 -21.546 -0.737 21.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.144 4.144 4 C -0.179 4.179 5 C 0.290 3.710 6 O -0.381 6.381 7 N -0.342 5.342 8 C -0.013 4.013 9 C -0.184 4.184 10 C -0.207 4.207 11 C 0.032 3.968 12 H 0.103 0.897 13 C -0.194 4.194 14 C 0.033 3.967 15 N -0.322 5.322 16 C -0.342 4.342 17 H 0.092 0.908 18 C -0.208 4.208 19 N -0.574 5.574 20 Si 0.744 3.256 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.213 1.213 24 C 0.007 3.993 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.097 0.903 43 H 0.124 0.876 44 H 0.026 0.974 45 H 0.061 0.939 46 H 0.056 0.944 47 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 2.057 -20.807 -0.760 20.922 hybrid contribution -0.096 0.602 0.607 0.861 sum 1.961 -20.204 -0.153 20.300 Atomic orbital electron populations 1.21763 0.95835 1.01243 1.02178 1.21535 0.96042 0.96849 1.01622 1.21384 0.93010 0.96191 1.03851 1.21756 0.97841 0.94752 1.03510 1.20632 0.82024 0.91448 0.76920 1.90820 1.54604 1.45831 1.46840 1.48046 1.05568 1.06570 1.74056 1.21616 0.93511 0.89527 0.96645 1.22009 0.99851 0.99020 0.97544 1.21702 0.99152 0.97949 1.01850 1.22159 0.97308 0.79323 0.98047 0.89725 1.23406 1.01276 0.99380 0.95323 1.21832 0.99108 0.90447 0.85306 1.44277 1.72623 1.07383 1.07878 1.19013 1.32384 0.89714 0.93054 0.90813 1.24745 1.02022 0.97646 0.96428 1.69789 1.54083 1.22515 1.11014 0.86164 0.79116 0.81438 0.78864 1.21371 1.21631 1.21266 1.21467 0.97112 0.87374 0.93334 0.92617 0.92628 0.93011 0.92227 0.92212 0.91133 0.91182 0.89572 0.89499 0.90648 0.90528 0.91266 0.91781 0.92728 0.92577 0.92587 0.93048 0.90286 0.87613 0.97369 0.93883 0.94396 0.96958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 37.16 0.37 -0.99 16 2 C -0.12 -1.11 5.93 -26.73 -0.16 -1.27 16 3 C -0.11 -1.27 4.50 -26.73 -0.12 -1.39 16 4 C -0.14 -1.58 4.25 -27.88 -0.12 -1.70 16 5 C 0.50 8.23 6.78 -10.98 -0.07 8.16 16 6 O -0.51 -10.99 12.34 5.56 0.07 -10.92 16 7 N -0.61 -9.19 2.54 -164.02 -0.42 -9.61 16 8 C 0.11 1.14 5.19 -4.04 -0.02 1.12 16 9 C -0.15 -1.39 6.26 -26.73 -0.17 -1.56 16 10 C -0.15 -1.07 9.91 37.16 0.37 -0.71 16 11 C 0.13 2.53 3.43 -66.10 -0.23 2.30 16 12 H 0.08 1.43 7.87 -51.93 -0.41 1.02 16 13 C -0.15 -3.28 6.42 -24.58 -0.16 -3.44 16 14 C 0.16 4.16 5.89 -2.53 -0.01 4.14 16 15 N -0.60 -16.60 3.39 -170.07 -0.58 -17.18 16 16 C -0.21 -6.39 10.27 -15.06 -0.15 -6.55 16 17 H 0.07 2.15 7.83 -52.48 -0.41 1.74 16 18 C -0.01 -0.40 5.49 -17.43 -0.10 -0.50 16 19 N -0.92 -28.43 10.09 55.49 0.56 -27.87 16 20 Si 0.91 23.31 29.55 -169.99 -5.02 18.29 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 C 0.13 3.11 6.47 -3.07 -0.02 3.09 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 31 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 32 H 0.09 0.80 7.40 -51.93 -0.38 0.42 16 33 H 0.09 0.84 7.19 -51.93 -0.37 0.47 16 34 H 0.08 0.62 6.44 -51.93 -0.33 0.29 16 35 H 0.08 0.73 7.96 -51.93 -0.41 0.32 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.63 7.22 -51.93 -0.38 0.26 16 38 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.08 1.83 6.04 -51.93 -0.31 1.52 16 43 H 0.11 3.14 5.87 -51.93 -0.31 2.83 16 44 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 45 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 46 H 0.04 0.95 6.06 -51.93 -0.31 0.63 16 47 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 LS Contribution 362.06 15.07 5.46 5.46 Total: -1.00 -34.17 362.06 -9.21 -43.38 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -8.68 Total: -2.25 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -0.59 Total: 0.71 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: -0.43 Total: -54.66 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.07 Total: -10.92 kcal Atomic # 14 Polarization: 23.31 SS G_CDS: -5.02 Total: 18.29 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.17 -9.21 -43.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753312619.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.776 kcal (2) G-P(sol) polarization free energy of solvation -34.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds