Wall clock time and date at job start Tue Mar 31 2020 06:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46946 * 2 1 4 4 C 1.53004 * 109.46946 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.46952 * 304.99664 * 4 3 2 6 6 C 1.53005 * 109.47135 * 64.99845 * 4 3 2 7 7 C 1.50698 * 109.46762 * 185.00081 * 4 3 2 8 8 O 1.21281 * 120.00108 * 355.79478 * 7 4 3 9 9 N 1.34775 * 119.99752 * 175.80376 * 7 4 3 10 10 C 1.46504 * 120.00298 * 176.27700 * 9 7 4 11 11 C 1.53005 * 109.46868 * 276.59835 * 10 9 7 12 12 C 1.46500 * 120.00085 * 356.27380 * 9 7 4 13 13 H 1.09005 * 110.88790 * 7.26303 * 12 9 7 14 14 C 1.55161 * 111.00689 * 243.38299 * 12 9 7 15 15 C 1.54319 * 102.94190 * 206.38451 * 14 12 9 16 16 N 1.47017 * 107.27525 * 22.19570 * 15 14 12 17 17 C 1.36937 * 125.64948 * 181.02043 * 16 15 14 18 18 H 1.08006 * 119.99852 * 174.87800 * 17 16 15 19 19 C 1.38813 * 119.99971 * 355.15998 * 17 16 15 20 20 N 1.31613 * 119.99994 * 4.94871 * 19 17 16 21 21 Si 1.86799 * 119.99677 * 184.94996 * 19 17 16 22 22 H 1.48506 * 109.46729 * 94.99900 * 21 19 17 23 23 H 1.48499 * 109.47146 * 214.99482 * 21 19 17 24 24 H 1.48497 * 109.47250 * 334.99797 * 21 19 17 25 25 C 1.47426 * 108.70084 * 1.28225 * 16 15 14 26 26 H 1.08999 * 109.47001 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47388 * 300.00029 * 1 2 3 28 28 H 1.09001 * 109.46997 * 60.00308 * 1 2 3 29 29 H 1.09000 * 109.46848 * 239.99911 * 2 1 3 30 30 H 1.09001 * 109.46997 * 119.99692 * 2 1 3 31 31 H 1.08991 * 109.47101 * 59.99795 * 3 2 1 32 32 H 1.09001 * 109.47021 * 299.99677 * 3 2 1 33 33 H 1.08999 * 109.46785 * 184.42189 * 6 4 3 34 34 H 1.08999 * 109.46936 * 304.42541 * 6 4 3 35 35 H 1.09001 * 109.46939 * 64.42613 * 6 4 3 36 36 H 1.08998 * 109.46897 * 36.59315 * 10 9 7 37 37 H 1.08994 * 109.47381 * 156.59417 * 10 9 7 38 38 H 1.08994 * 109.47217 * 65.16881 * 11 10 9 39 39 H 1.08997 * 109.46550 * 185.16800 * 11 10 9 40 40 H 1.08995 * 109.46693 * 305.16514 * 11 10 9 41 41 H 1.09004 * 110.71496 * 88.01900 * 14 12 9 42 42 H 1.09004 * 110.86824 * 324.82285 * 14 12 9 43 43 H 1.09000 * 109.88015 * 262.77216 * 15 14 12 44 44 H 1.08999 * 109.87825 * 141.61410 * 15 14 12 45 45 H 0.96996 * 119.99889 * 180.02562 * 20 19 17 46 46 H 1.09000 * 110.36535 * 94.48411 * 25 16 15 47 47 H 1.08999 * 110.36976 * 216.80648 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8530 0.8410 6 6 4.0795 0.8330 -1.3083 7 6 4.0723 2.8579 0.1232 8 8 3.2868 3.7820 0.1272 9 7 5.3945 3.0968 0.2293 10 6 5.8890 4.4753 0.2676 11 6 6.0207 5.0097 -1.1601 12 6 6.3372 1.9781 0.3065 13 1 5.8285 1.0289 0.1375 14 6 7.0852 1.9738 1.6659 15 6 8.4100 1.2576 1.3291 16 7 8.6198 1.3865 -0.1203 17 6 9.6747 0.8685 -0.8232 18 1 9.6966 0.9470 -1.9002 19 6 10.7129 0.2373 -0.1520 20 7 10.6382 0.0501 1.1486 21 14 12.2162 -0.3464 -1.0949 22 1 13.2761 0.6916 -1.0281 23 1 12.7194 -1.6071 -0.4928 24 1 11.8481 -0.5875 -2.5132 25 6 7.5097 2.1713 -0.6906 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 5.1666 0.7608 -1.2762 34 1 3.6528 -0.1618 -1.4360 35 1 3.7820 1.4660 -2.1443 36 1 5.1887 5.0972 0.8251 37 1 6.8634 4.4984 0.7555 38 1 5.0331 5.0730 -1.6168 39 1 6.4744 6.0005 -1.1367 40 1 6.6484 4.3363 -1.7435 41 1 6.5232 1.4140 2.4135 42 1 7.2731 2.9913 2.0089 43 1 8.3416 0.2044 1.6016 44 1 9.2331 1.7289 1.8662 45 1 11.3638 -0.3906 1.6176 46 1 7.7844 3.2240 -0.7574 47 1 7.2386 1.7861 -1.6736 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753453630.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:50 Heat of formation + Delta-G solvation = -24.506739 kcal Electronic energy + Delta-G solvation = -23820.147789 eV Core-core repulsion = 20617.250982 eV Total energy + Delta-G solvation = -3202.896807 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.27886 -37.64713 -36.08794 -34.83867 -32.53804 -32.04899 -30.33088 -29.01157 -27.37057 -26.62526 -24.59040 -24.30952 -22.60627 -20.99368 -20.44958 -20.09428 -18.44682 -17.18521 -16.96334 -15.80715 -15.51969 -15.03161 -14.71174 -14.35241 -14.13565 -13.91177 -13.45396 -13.38084 -13.02437 -12.79828 -12.47789 -12.33132 -12.27718 -12.07730 -11.99370 -11.73430 -11.58261 -11.25022 -11.02620 -10.99447 -10.89898 -10.86879 -10.78161 -10.68805 -10.56371 -10.29626 -10.12555 -9.92006 -9.75570 -9.35772 -8.66574 -8.33028 -6.89967 -5.77919 -3.11801 2.82869 3.20052 3.36833 3.42623 3.44147 4.43058 4.55241 4.73056 4.87124 5.07984 5.14254 5.20625 5.23199 5.30207 5.31449 5.44469 5.49681 5.52195 5.61428 5.61514 5.64251 5.71929 5.72658 5.81150 5.86418 5.90875 5.93247 6.04994 6.08521 6.12025 6.16471 6.25642 6.29555 6.34446 6.40428 6.42379 6.54111 6.71874 6.86076 7.48013 7.54559 7.67660 7.76641 8.18430 8.39793 9.15055 9.75245 10.40081 11.33734 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019584 B = 0.004440 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.377223 B = 6305.235671 C = 7032.195055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C -0.097 4.097 4 C -0.112 4.112 5 H 0.095 0.905 6 C -0.156 4.156 7 C 0.520 3.480 8 O -0.552 6.552 9 N -0.596 5.596 10 C 0.112 3.888 11 C -0.169 4.169 12 C 0.108 3.892 13 H 0.108 0.892 14 C -0.156 4.156 15 C 0.179 3.821 16 N -0.603 5.603 17 C -0.231 4.231 18 H 0.078 0.922 19 C -0.005 4.005 20 N -0.920 5.920 21 Si 0.911 3.089 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.128 3.872 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.046 0.954 44 H 0.048 0.952 45 H 0.253 0.747 46 H 0.031 0.969 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.526 2.463 -1.365 14.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.135 4.135 4 C -0.133 4.133 5 H 0.113 0.887 6 C -0.213 4.213 7 C 0.308 3.692 8 O -0.430 6.430 9 N -0.327 5.327 10 C -0.011 4.011 11 C -0.227 4.227 12 C 0.004 3.996 13 H 0.126 0.874 14 C -0.195 4.195 15 C 0.054 3.946 16 N -0.330 5.330 17 C -0.359 4.359 18 H 0.096 0.904 19 C -0.201 4.201 20 N -0.567 5.567 21 Si 0.741 3.259 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.206 1.206 25 C 0.001 3.999 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.063 0.937 46 H 0.048 0.952 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -14.730 2.834 -1.315 15.058 hybrid contribution 1.032 -0.339 -0.361 1.144 sum -13.699 2.495 -1.676 14.025 Atomic orbital electron populations 1.21754 0.95949 1.01341 1.01808 1.21621 0.95787 0.96837 1.02258 1.21394 0.92489 0.96435 1.03188 1.21328 0.97408 0.93846 1.00746 0.88727 1.22065 1.02613 1.01082 0.95502 1.20636 0.81774 0.91303 0.75449 1.90638 1.55121 1.46291 1.50955 1.47989 1.05910 1.07028 1.71763 1.21328 1.00070 0.82127 0.97542 1.22223 1.02080 1.01098 0.97321 1.22860 0.90098 0.89042 0.97648 0.87413 1.23285 0.99139 1.01202 0.95877 1.21151 0.90695 0.98123 0.84659 1.44391 1.23464 1.61466 1.03697 1.19046 0.95918 1.30409 0.90522 0.90381 1.24807 0.98534 1.00944 0.95857 1.69957 1.32554 1.47456 1.06716 0.86116 0.83113 0.77874 0.78760 1.21599 1.21717 1.20599 1.21919 0.87522 0.95682 0.94737 0.92905 0.92821 0.92805 0.91613 0.91959 0.91452 0.91434 0.90618 0.91251 0.92292 0.90742 0.90070 0.92640 0.92013 0.91652 0.91943 0.91968 0.93597 0.93422 0.93685 0.95189 0.94157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 37.16 0.37 -0.92 16 2 C -0.13 -1.20 5.69 -26.73 -0.15 -1.36 16 3 C -0.10 -1.12 4.00 -26.73 -0.11 -1.22 16 4 C -0.11 -1.41 1.88 -91.77 -0.17 -1.58 16 5 H 0.09 1.14 7.56 -51.93 -0.39 0.75 16 6 C -0.16 -1.84 8.61 37.16 0.32 -1.52 16 7 C 0.52 7.99 6.95 -10.99 -0.08 7.92 16 8 O -0.55 -9.88 15.63 5.56 0.09 -9.79 16 9 N -0.60 -9.05 2.53 -163.53 -0.41 -9.47 16 10 C 0.11 1.62 5.09 -4.04 -0.02 1.60 16 11 C -0.17 -2.29 9.88 37.16 0.37 -1.92 16 12 C 0.11 1.76 2.43 -65.66 -0.16 1.60 16 13 H 0.11 1.69 4.20 -51.93 -0.22 1.47 16 14 C -0.16 -2.75 6.50 -24.90 -0.16 -2.91 16 15 C 0.18 4.10 5.37 -3.07 -0.02 4.09 16 16 N -0.60 -14.57 3.39 -169.94 -0.58 -15.15 16 17 C -0.23 -6.18 10.27 -15.06 -0.15 -6.34 16 18 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 19 C 0.00 -0.13 5.48 -17.43 -0.10 -0.23 16 20 N -0.92 -26.13 10.34 55.49 0.57 -25.55 16 21 Si 0.91 21.50 29.56 -169.99 -5.02 16.48 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 C 0.13 2.48 6.07 -2.41 -0.01 2.47 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.59 6.47 -51.93 -0.34 0.26 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.83 8.02 -51.93 -0.42 0.42 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 1.00 5.13 -51.93 -0.27 0.74 16 34 H 0.07 0.70 6.37 -51.93 -0.33 0.37 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 1.08 7.58 -51.93 -0.39 0.69 16 37 H 0.08 1.18 6.38 -51.93 -0.33 0.85 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.94 6.15 -51.93 -0.32 0.62 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.06 1.06 6.73 -51.93 -0.35 0.71 16 43 H 0.05 1.16 7.53 -51.93 -0.39 0.77 16 44 H 0.05 1.23 7.38 -51.93 -0.38 0.84 16 45 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 46 H 0.03 0.59 5.29 -51.93 -0.27 0.31 16 47 H 0.04 0.77 7.97 -51.93 -0.41 0.36 16 LS Contribution 353.07 15.07 5.32 5.32 Total: -1.00 -29.69 353.07 -8.28 -37.97 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -8.17 Total: 0.51 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -0.08 Total: -0.32 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: -0.42 Total: -50.16 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.69 -8.28 -37.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753453630.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.458 kcal (2) G-P(sol) polarization free energy of solvation -29.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds