Wall clock time and date at job start Tue Mar 31 2020 06:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46928 * 2 1 4 4 C 1.53005 * 109.46905 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.46932 * 304.99858 * 4 3 2 6 6 C 1.52995 * 109.47341 * 64.99585 * 4 3 2 7 7 C 1.50691 * 109.47046 * 184.99804 * 4 3 2 8 8 O 1.21285 * 120.00367 * 333.02736 * 7 4 3 9 9 N 1.34781 * 119.99928 * 153.02198 * 7 4 3 10 10 C 1.46502 * 119.99862 * 3.72837 * 9 7 4 11 11 C 1.53003 * 109.46525 * 270.14850 * 10 9 7 12 12 C 1.46498 * 119.99992 * 183.72197 * 9 7 4 13 13 H 1.08996 * 110.64346 * 9.33876 * 12 9 7 14 14 C 1.55157 * 110.72029 * 132.67549 * 12 9 7 15 15 C 1.54911 * 101.57994 * 153.86369 * 14 12 9 16 16 N 1.47418 * 104.83349 * 322.98915 * 15 14 12 17 17 C 1.36937 * 125.64622 * 204.09009 * 16 15 14 18 18 H 1.08010 * 119.99855 * 180.02562 * 17 16 15 19 19 C 1.38813 * 120.00370 * 0.05064 * 17 16 15 20 20 N 1.31616 * 119.99692 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99987 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47572 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47126 * 119.99702 * 21 19 17 24 24 H 1.48504 * 109.46898 * 239.99438 * 21 19 17 25 25 C 1.47016 * 108.70413 * 24.12897 * 16 15 14 26 26 H 1.08995 * 109.47356 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46607 * 300.00344 * 1 2 3 28 28 H 1.08998 * 109.47335 * 59.99765 * 1 2 3 29 29 H 1.08999 * 109.46632 * 240.00154 * 2 1 3 30 30 H 1.08995 * 109.46840 * 120.00300 * 2 1 3 31 31 H 1.08990 * 109.47476 * 60.00344 * 3 2 1 32 32 H 1.09006 * 109.47140 * 299.99940 * 3 2 1 33 33 H 1.08996 * 109.47388 * 188.62240 * 6 4 3 34 34 H 1.09004 * 109.47551 * 308.62391 * 6 4 3 35 35 H 1.09005 * 109.47127 * 68.61876 * 6 4 3 36 36 H 1.08997 * 109.47443 * 30.14380 * 10 9 7 37 37 H 1.08996 * 109.46989 * 150.15147 * 10 9 7 38 38 H 1.08990 * 109.47626 * 70.85186 * 11 10 9 39 39 H 1.09008 * 109.46899 * 190.85506 * 11 10 9 40 40 H 1.09001 * 109.47017 * 310.85046 * 11 10 9 41 41 H 1.09000 * 111.00298 * 271.93792 * 14 12 9 42 42 H 1.09003 * 111.00454 * 35.79113 * 14 12 9 43 43 H 1.09002 * 110.36600 * 204.15152 * 15 14 12 44 44 H 1.09002 * 110.45867 * 81.87899 * 15 14 12 45 45 H 0.97003 * 119.99942 * 180.02562 * 20 19 17 46 46 H 1.08996 * 109.88522 * 239.51806 * 25 16 15 47 47 H 1.09011 * 110.01008 * 118.43014 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 1 3.9337 0.8529 0.8410 6 6 4.0795 0.8330 -1.3082 7 6 4.0724 2.8578 0.1231 8 8 3.3919 3.7799 -0.2740 9 7 5.2780 3.0991 0.6753 10 6 6.1349 1.9821 1.0804 11 6 5.8277 1.6037 2.5308 12 6 5.7315 4.4784 0.8702 13 1 4.9217 5.1808 0.6729 14 6 6.2958 4.6736 2.3023 15 6 7.2816 5.8496 2.0906 16 7 7.8763 5.6093 0.7633 17 6 9.0901 6.0776 0.3360 18 1 9.4384 5.8455 -0.6597 19 6 9.8732 6.8501 1.1827 20 7 9.4488 7.1329 2.3960 21 14 11.5293 7.4882 0.6000 22 1 11.7731 7.0333 -0.7924 23 1 11.5311 8.9726 0.6437 24 1 12.6006 6.9657 1.4858 25 6 6.9501 4.7844 -0.0260 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6768 1.9563 0.8899 32 1 1.6766 1.9564 -0.8900 33 1 5.1586 0.6917 -1.2471 34 1 3.5958 -0.1298 -1.4731 35 1 3.8471 1.5028 -2.1362 36 1 5.9454 1.1255 0.4336 37 1 7.1808 2.2771 0.9956 38 1 4.8480 1.1290 2.5828 39 1 6.5870 0.9110 2.8942 40 1 5.8296 2.5017 3.1487 41 1 5.5045 4.9478 3.0000 42 1 6.8206 3.7800 2.6406 43 1 8.0540 5.8404 2.8597 44 1 6.7484 6.8003 2.1009 45 1 9.9959 7.6730 2.9876 46 1 7.4384 3.8546 -0.3178 47 1 6.6296 5.3292 -0.9141 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753453631.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:54 Heat of formation + Delta-G solvation = -24.646975 kcal Electronic energy + Delta-G solvation = -23577.258769 eV Core-core repulsion = 20374.355881 eV Total energy + Delta-G solvation = -3202.902888 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.24145 -37.63347 -35.95517 -35.22810 -32.53472 -31.73450 -30.39153 -29.19053 -27.14065 -26.84157 -24.77248 -23.99152 -22.95194 -21.25266 -20.22557 -19.79304 -18.46407 -17.27061 -16.96721 -15.87396 -15.55155 -15.13179 -14.67222 -14.33400 -14.00736 -13.97009 -13.75762 -13.29965 -13.21097 -12.90569 -12.49748 -12.31921 -12.22954 -12.10775 -11.96333 -11.81511 -11.52760 -11.31837 -11.09775 -11.06976 -11.01295 -10.88227 -10.82906 -10.80883 -10.66123 -10.21585 -10.09133 -9.78621 -9.54572 -9.34457 -8.66023 -8.32418 -6.84228 -5.66037 -3.08011 2.82697 3.19386 3.39361 3.45136 3.47509 4.45156 4.50133 4.60397 4.76628 4.95162 4.99930 5.05509 5.17883 5.24508 5.30904 5.44153 5.46250 5.50618 5.54162 5.56392 5.61622 5.64309 5.70605 5.73053 5.77814 5.84102 5.90492 5.92001 5.94374 5.98866 6.16369 6.22167 6.23973 6.28239 6.45796 6.55417 6.63119 6.75762 7.05198 7.50022 7.61814 7.69619 7.84352 8.33828 8.42543 9.21109 9.81743 10.46285 11.37779 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.036447 B = 0.003574 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.063762 B = 7832.084509 C = 7912.108400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.102 4.102 4 C -0.112 4.112 5 H 0.092 0.908 6 C -0.144 4.144 7 C 0.517 3.483 8 O -0.546 6.546 9 N -0.596 5.596 10 C 0.100 3.900 11 C -0.179 4.179 12 C 0.127 3.873 13 H 0.099 0.901 14 C -0.156 4.156 15 C 0.153 3.847 16 N -0.602 5.602 17 C -0.220 4.220 18 H 0.077 0.923 19 C -0.012 4.012 20 N -0.922 5.922 21 Si 0.915 3.085 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.130 3.870 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.052 0.948 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.059 0.941 42 H 0.073 0.927 43 H 0.109 0.891 44 H 0.013 0.987 45 H 0.252 0.748 46 H 0.026 0.974 47 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.351 -16.489 -1.493 20.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.139 4.139 4 C -0.133 4.133 5 H 0.110 0.890 6 C -0.202 4.202 7 C 0.305 3.695 8 O -0.423 6.423 9 N -0.328 5.328 10 C -0.023 4.023 11 C -0.237 4.237 12 C 0.024 3.976 13 H 0.118 0.882 14 C -0.195 4.195 15 C 0.028 3.972 16 N -0.329 5.329 17 C -0.349 4.349 18 H 0.095 0.905 19 C -0.207 4.207 20 N -0.571 5.571 21 Si 0.745 3.255 22 H -0.205 1.205 23 H -0.217 1.217 24 H -0.217 1.217 25 C 0.003 3.997 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.106 0.894 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.127 0.873 44 H 0.031 0.969 45 H 0.062 0.938 46 H 0.043 0.957 47 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -12.522 -15.862 -1.646 20.276 hybrid contribution 0.921 0.397 -0.243 1.032 sum -11.602 -15.465 -1.889 19.425 Atomic orbital electron populations 1.21763 0.95845 1.01370 1.01995 1.21603 0.95911 0.96735 1.02016 1.21441 0.92513 0.96608 1.03386 1.21386 0.97499 0.93926 1.00539 0.89030 1.21824 1.01239 1.01145 0.95976 1.20639 0.80858 0.91148 0.76889 1.90668 1.56746 1.46310 1.48593 1.48018 1.17081 1.07140 1.60562 1.21588 0.96281 0.88906 0.95551 1.22454 1.01414 1.02686 0.97160 1.22200 0.97124 0.81594 0.96715 0.88249 1.23533 0.99604 1.01864 0.94538 1.21937 0.94113 0.91246 0.89907 1.44444 1.17370 1.59531 1.11526 1.19121 0.92021 1.25524 0.98201 0.90465 1.24788 0.99091 1.00436 0.96374 1.69795 1.37366 1.42915 1.07013 0.85992 0.83411 0.78388 0.77673 1.20548 1.21739 1.21749 1.21527 0.89755 0.94608 0.93795 0.92893 0.92743 0.92678 0.91681 0.92092 0.91726 0.90882 0.92056 0.91238 0.91935 0.90579 0.89386 0.92890 0.91643 0.90795 0.92214 0.90868 0.87323 0.96859 0.93766 0.95667 0.95853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.16 0.37 -0.77 16 2 C -0.13 -1.00 5.70 -26.73 -0.15 -1.15 16 3 C -0.10 -1.07 4.15 -26.73 -0.11 -1.18 16 4 C -0.11 -1.24 1.88 -91.78 -0.17 -1.41 16 5 H 0.09 0.87 5.61 -51.93 -0.29 0.58 16 6 C -0.14 -1.39 8.97 37.16 0.33 -1.05 16 7 C 0.52 8.02 6.75 -10.99 -0.07 7.94 16 8 O -0.55 -10.56 15.64 5.55 0.09 -10.48 16 9 N -0.60 -9.27 2.49 -164.03 -0.41 -9.68 16 10 C 0.10 1.25 4.75 -4.04 -0.02 1.23 16 11 C -0.18 -1.96 9.66 37.16 0.36 -1.60 16 12 C 0.13 2.41 3.31 -66.09 -0.22 2.20 16 13 H 0.10 2.07 7.07 -51.93 -0.37 1.70 16 14 C -0.16 -2.98 5.67 -24.58 -0.14 -3.12 16 15 C 0.15 3.73 5.89 -2.53 -0.01 3.72 16 16 N -0.60 -15.58 3.39 -170.07 -0.58 -16.16 16 17 C -0.22 -6.17 10.27 -15.06 -0.15 -6.33 16 18 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 19 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 20 N -0.92 -26.80 10.09 55.49 0.56 -26.24 16 21 Si 0.91 22.10 29.55 -169.99 -5.02 17.07 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 C 0.13 2.85 6.79 -3.07 -0.02 2.83 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.47 6.39 -51.93 -0.33 0.14 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.87 8.03 -51.93 -0.42 0.45 16 33 H 0.06 0.56 6.64 -51.93 -0.34 0.21 16 34 H 0.07 0.52 6.21 -51.93 -0.32 0.20 16 35 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 36 H 0.08 0.77 5.19 -51.93 -0.27 0.50 16 37 H 0.09 1.25 6.85 -51.93 -0.36 0.90 16 38 H 0.05 0.51 6.83 -51.93 -0.35 0.16 16 39 H 0.06 0.62 8.14 -51.92 -0.42 0.19 16 40 H 0.07 0.94 5.49 -51.93 -0.28 0.65 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.07 1.31 5.06 -51.93 -0.26 1.05 16 43 H 0.11 2.94 5.87 -51.93 -0.31 2.63 16 44 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.25 7.07 8.31 -40.82 -0.34 6.74 16 46 H 0.03 0.54 6.85 -51.93 -0.36 0.18 16 47 H 0.02 0.54 8.14 -51.92 -0.42 0.12 16 LS Contribution 351.29 15.07 5.29 5.29 Total: -1.00 -31.42 351.29 -8.22 -39.63 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -8.03 Total: -0.33 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -0.11 Total: 0.88 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: -0.43 Total: -52.08 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.42 -8.22 -39.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753453631.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.987 kcal (2) G-P(sol) polarization free energy of solvation -31.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds