Wall clock time and date at job start Tue Mar 31 2020 06:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46983 * 2 1 4 4 C 1.53000 * 109.46983 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.46798 * 55.00570 * 4 3 2 6 6 C 1.52997 * 109.47217 * 295.00422 * 4 3 2 7 7 C 1.50700 * 109.46921 * 175.00112 * 4 3 2 8 8 O 1.21280 * 119.99920 * 27.98679 * 7 4 3 9 9 N 1.34773 * 119.99877 * 207.98644 * 7 4 3 10 10 C 1.46499 * 120.00288 * 354.13899 * 9 7 4 11 11 C 1.52998 * 109.47146 * 84.94488 * 10 9 7 12 12 C 1.46502 * 119.99900 * 174.13888 * 9 7 4 13 13 H 1.08999 * 110.88803 * 357.79342 * 12 9 7 14 14 C 1.55150 * 111.00547 * 233.91372 * 12 9 7 15 15 C 1.54323 * 102.94472 * 206.42196 * 14 12 9 16 16 N 1.47023 * 107.26848 * 22.19524 * 15 14 12 17 17 C 1.36938 * 125.64961 * 180.79736 * 16 15 14 18 18 H 1.07999 * 120.00382 * 174.21454 * 17 16 15 19 19 C 1.38815 * 119.99701 * 354.20520 * 17 16 15 20 20 N 1.31616 * 120.00281 * 6.53812 * 19 17 16 21 21 Si 1.86804 * 120.00005 * 186.53291 * 19 17 16 22 22 H 1.48506 * 109.46881 * 94.98840 * 21 19 17 23 23 H 1.48497 * 109.47234 * 214.99117 * 21 19 17 24 24 H 1.48502 * 109.47228 * 334.99320 * 21 19 17 25 25 C 1.47424 * 108.70561 * 1.05523 * 16 15 14 26 26 H 1.08996 * 109.47170 * 59.99422 * 1 2 3 27 27 H 1.08996 * 109.46969 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47113 * 299.99568 * 1 2 3 29 29 H 1.08998 * 109.46783 * 240.00720 * 2 1 3 30 30 H 1.08996 * 109.47497 * 120.00142 * 2 1 3 31 31 H 1.09004 * 109.46844 * 60.00267 * 3 2 1 32 32 H 1.08996 * 109.47121 * 300.00373 * 3 2 1 33 33 H 1.09001 * 109.46647 * 186.68065 * 6 4 3 34 34 H 1.09001 * 109.46945 * 306.67701 * 6 4 3 35 35 H 1.09003 * 109.47409 * 66.68033 * 6 4 3 36 36 H 1.09002 * 109.47050 * 204.94619 * 10 9 7 37 37 H 1.09001 * 109.46644 * 324.94509 * 10 9 7 38 38 H 1.09005 * 109.46568 * 307.21987 * 11 10 9 39 39 H 1.08997 * 109.47393 * 67.22130 * 11 10 9 40 40 H 1.09001 * 109.47234 * 187.22467 * 11 10 9 41 41 H 1.08998 * 110.72493 * 88.06106 * 14 12 9 42 42 H 1.08996 * 110.71986 * 324.78438 * 14 12 9 43 43 H 1.09000 * 109.88837 * 262.78020 * 15 14 12 44 44 H 1.09005 * 109.88645 * 141.60667 * 15 14 12 45 45 H 0.96997 * 120.00381 * 179.97438 * 20 19 17 46 46 H 1.08998 * 110.36648 * 94.71128 * 25 16 15 47 47 H 1.09001 * 110.37117 * 217.03810 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9329 0.8533 -0.8428 6 6 4.0806 0.8327 1.3063 7 6 4.0722 2.8580 -0.1245 8 8 3.4000 3.7784 0.2902 9 7 5.2683 3.1011 -0.6960 10 6 6.1368 1.9856 -1.0802 11 6 5.7382 1.4840 -2.4695 12 6 5.7001 4.4808 -0.9330 13 1 4.9281 5.1874 -0.6282 14 6 6.0927 4.6932 -2.4189 15 6 7.1052 5.8555 -2.3462 16 7 7.6461 5.8783 -0.9793 17 6 8.5656 6.7725 -0.4996 18 1 8.8316 6.7646 0.5471 19 6 9.1560 7.6891 -1.3588 20 7 8.7408 7.7861 -2.6040 21 14 10.5398 8.7851 -0.7478 22 1 11.8470 8.1645 -1.0818 23 1 10.4424 10.1156 -1.4001 24 1 10.4303 8.9464 0.7244 25 6 7.0393 4.7752 -0.2123 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9564 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 5.1640 0.9401 1.3584 34 1 3.6233 1.3483 2.1508 35 1 3.8182 -0.2247 1.3408 36 1 7.1735 2.3220 -1.0989 37 1 6.0303 1.1766 -0.3574 38 1 4.6698 1.2682 -2.4851 39 1 5.9652 2.2497 -3.2113 40 1 6.2955 0.5765 -2.7019 41 1 5.2226 4.9763 -3.0112 42 1 6.5624 3.7975 -2.8255 43 1 6.6032 6.7987 -2.5619 44 1 7.9114 5.6903 -3.0611 45 1 9.1531 8.4268 -3.2043 46 1 7.6841 3.8967 -0.2364 47 1 6.8563 5.0843 0.8168 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753453632.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:59 Heat of formation + Delta-G solvation = -26.881250 kcal Electronic energy + Delta-G solvation = -23531.436256 eV Core-core repulsion = 20328.436483 eV Total energy + Delta-G solvation = -3202.999774 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.24332 -37.61981 -35.95058 -35.26300 -32.53549 -31.73848 -30.38865 -29.15794 -27.20620 -26.84807 -24.72600 -24.04894 -22.98605 -21.27741 -20.08386 -19.84816 -18.57006 -17.27147 -16.95525 -15.91034 -15.56039 -15.03405 -14.61603 -14.32921 -14.05854 -13.95491 -13.77699 -13.31599 -13.08310 -12.88623 -12.51587 -12.42907 -12.28523 -12.17551 -12.10306 -11.93345 -11.64614 -11.31400 -11.09659 -11.08446 -10.91836 -10.85486 -10.81613 -10.72755 -10.66768 -10.20173 -10.07899 -9.79228 -9.66981 -9.35558 -8.59765 -8.31634 -6.82511 -5.71875 -3.05010 2.81857 3.17606 3.41026 3.46406 3.48459 4.45278 4.51724 4.60451 4.76060 4.93777 5.01071 5.03521 5.12538 5.20724 5.27487 5.43154 5.45071 5.49905 5.50281 5.61069 5.62400 5.65392 5.69023 5.71098 5.74336 5.79061 5.84036 5.89536 5.93542 5.97855 6.13474 6.18647 6.22820 6.30135 6.39002 6.51858 6.61367 6.75448 7.02879 7.55257 7.61412 7.68796 7.82721 8.25050 8.41919 9.21658 9.81847 10.47632 11.40042 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035574 B = 0.003542 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.897431 B = 7902.799321 C = 8025.063091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.102 4.102 4 C -0.114 4.114 5 H 0.093 0.907 6 C -0.142 4.142 7 C 0.517 3.483 8 O -0.544 6.544 9 N -0.597 5.597 10 C 0.099 3.901 11 C -0.178 4.178 12 C 0.123 3.877 13 H 0.104 0.896 14 C -0.156 4.156 15 C 0.179 3.821 16 N -0.603 5.603 17 C -0.229 4.229 18 H 0.078 0.922 19 C -0.007 4.007 20 N -0.920 5.920 21 Si 0.911 3.089 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.131 3.869 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.056 0.944 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.044 0.956 44 H 0.048 0.952 45 H 0.252 0.748 46 H 0.021 0.979 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.809 -18.501 2.258 21.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.140 4.140 4 C -0.135 4.135 5 H 0.112 0.888 6 C -0.200 4.200 7 C 0.305 3.695 8 O -0.421 6.421 9 N -0.329 5.329 10 C -0.024 4.024 11 C -0.236 4.236 12 C 0.019 3.981 13 H 0.122 0.878 14 C -0.195 4.195 15 C 0.054 3.946 16 N -0.330 5.330 17 C -0.357 4.357 18 H 0.096 0.904 19 C -0.203 4.203 20 N -0.567 5.567 21 Si 0.742 3.258 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.206 1.206 25 C 0.004 3.996 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.063 0.937 46 H 0.039 0.961 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -11.032 -17.807 2.399 21.085 hybrid contribution 0.873 0.599 0.107 1.064 sum -10.160 -17.209 2.507 20.140 Atomic orbital electron populations 1.21764 0.95859 1.01367 1.02005 1.21578 0.95906 0.96704 1.01986 1.21465 0.92497 0.96634 1.03392 1.21445 0.97526 0.93914 1.00632 0.88844 1.21791 1.01331 1.00878 0.95979 1.20632 0.80761 0.91134 0.76982 1.90675 1.56824 1.46481 1.48084 1.47963 1.17677 1.07120 1.60146 1.21608 0.95920 0.88875 0.96020 1.22442 1.01576 1.01740 0.97813 1.22405 0.97786 0.81472 0.96398 0.87816 1.23355 1.00151 1.00947 0.95009 1.21151 0.92989 0.93413 0.87049 1.44385 1.48774 1.31548 1.08262 1.19062 1.13676 1.09338 0.93614 0.90408 1.24825 0.99893 0.99708 0.95889 1.69971 1.43275 1.38513 1.04982 0.86103 0.82199 0.79706 0.77804 1.21622 1.21747 1.20610 1.21757 0.91109 0.91693 0.95047 0.92745 0.92899 0.92670 0.92119 0.91742 0.90863 0.91760 0.92114 0.91859 0.91445 0.89251 0.90723 0.92502 0.91241 0.91726 0.92115 0.91509 0.93796 0.93410 0.93735 0.96139 0.94211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.16 0.37 -0.77 16 2 C -0.12 -0.98 5.69 -26.73 -0.15 -1.13 16 3 C -0.10 -1.07 4.16 -26.73 -0.11 -1.18 16 4 C -0.11 -1.24 1.89 -91.77 -0.17 -1.41 16 5 H 0.09 0.86 5.23 -51.93 -0.27 0.59 16 6 C -0.14 -1.32 8.51 37.16 0.32 -1.01 16 7 C 0.52 7.95 6.70 -10.99 -0.07 7.88 16 8 O -0.54 -10.57 15.64 5.56 0.09 -10.48 16 9 N -0.60 -9.10 2.52 -163.68 -0.41 -9.51 16 10 C 0.10 1.17 4.87 -4.04 -0.02 1.15 16 11 C -0.18 -1.81 9.60 37.16 0.36 -1.46 16 12 C 0.12 2.34 3.44 -65.78 -0.23 2.11 16 13 H 0.10 2.23 7.04 -51.93 -0.37 1.86 16 14 C -0.16 -2.95 6.27 -24.90 -0.16 -3.11 16 15 C 0.18 4.38 5.38 -3.06 -0.02 4.36 16 16 N -0.60 -15.65 3.39 -170.07 -0.58 -16.23 16 17 C -0.23 -6.47 10.27 -15.06 -0.15 -6.63 16 18 H 0.08 2.14 7.84 -52.49 -0.41 1.73 16 19 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 20 N -0.92 -27.19 10.36 55.49 0.57 -26.61 16 21 Si 0.91 22.29 29.56 -169.99 -5.02 17.27 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C 0.13 2.81 6.79 -2.53 -0.02 2.79 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.46 6.72 -51.93 -0.35 0.11 16 31 H 0.07 0.87 8.02 -51.93 -0.42 0.45 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.56 6.73 -51.93 -0.35 0.21 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.48 6.90 -51.93 -0.36 0.12 16 36 H 0.09 1.17 6.33 -51.93 -0.33 0.84 16 37 H 0.07 0.71 5.56 -51.93 -0.29 0.42 16 38 H 0.06 0.55 6.51 -51.93 -0.34 0.21 16 39 H 0.07 0.82 5.81 -51.93 -0.30 0.51 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.07 1.14 4.96 -51.93 -0.26 0.88 16 43 H 0.04 1.20 7.55 -51.93 -0.39 0.80 16 44 H 0.05 1.28 7.36 -51.93 -0.38 0.89 16 45 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 46 H 0.02 0.42 6.31 -51.93 -0.33 0.10 16 47 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 352.22 15.07 5.31 5.31 Total: -1.00 -32.05 352.22 -8.28 -40.33 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -8.08 Total: -1.38 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -0.15 Total: 1.31 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: -0.42 Total: -52.35 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.05 -8.28 -40.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753453632.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.444 kcal (2) G-P(sol) polarization free energy of solvation -32.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds