Wall clock time and date at job start Tue Mar 31 2020 06:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46983 * 2 1 4 4 C 1.53000 * 109.46983 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.46798 * 55.00570 * 4 3 2 6 6 C 1.52997 * 109.47217 * 295.00422 * 4 3 2 7 7 C 1.50700 * 109.46921 * 175.00112 * 4 3 2 8 8 O 1.21280 * 119.99920 * 27.98679 * 7 4 3 9 9 N 1.34773 * 119.99877 * 207.98644 * 7 4 3 10 10 C 1.46499 * 120.00288 * 354.13899 * 9 7 4 11 11 C 1.52998 * 109.47146 * 84.94488 * 10 9 7 12 12 C 1.46502 * 119.99900 * 174.13888 * 9 7 4 13 13 H 1.08999 * 110.88803 * 357.79342 * 12 9 7 14 14 C 1.55150 * 111.00547 * 233.91372 * 12 9 7 15 15 C 1.54323 * 102.94472 * 206.42196 * 14 12 9 16 16 N 1.47023 * 107.26848 * 22.19524 * 15 14 12 17 17 C 1.36938 * 125.64961 * 180.79736 * 16 15 14 18 18 H 1.07999 * 120.00382 * 174.21454 * 17 16 15 19 19 C 1.38815 * 119.99701 * 354.20520 * 17 16 15 20 20 N 1.31616 * 120.00281 * 6.53812 * 19 17 16 21 21 Si 1.86804 * 120.00005 * 186.53291 * 19 17 16 22 22 H 1.48506 * 109.46881 * 94.98840 * 21 19 17 23 23 H 1.48497 * 109.47234 * 214.99117 * 21 19 17 24 24 H 1.48502 * 109.47228 * 334.99320 * 21 19 17 25 25 C 1.47424 * 108.70561 * 1.05523 * 16 15 14 26 26 H 1.08996 * 109.47170 * 59.99422 * 1 2 3 27 27 H 1.08996 * 109.46969 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47113 * 299.99568 * 1 2 3 29 29 H 1.08998 * 109.46783 * 240.00720 * 2 1 3 30 30 H 1.08996 * 109.47497 * 120.00142 * 2 1 3 31 31 H 1.09004 * 109.46844 * 60.00267 * 3 2 1 32 32 H 1.08996 * 109.47121 * 300.00373 * 3 2 1 33 33 H 1.09001 * 109.46647 * 186.68065 * 6 4 3 34 34 H 1.09001 * 109.46945 * 306.67701 * 6 4 3 35 35 H 1.09003 * 109.47409 * 66.68033 * 6 4 3 36 36 H 1.09002 * 109.47050 * 204.94619 * 10 9 7 37 37 H 1.09001 * 109.46644 * 324.94509 * 10 9 7 38 38 H 1.09005 * 109.46568 * 307.21987 * 11 10 9 39 39 H 1.08997 * 109.47393 * 67.22130 * 11 10 9 40 40 H 1.09001 * 109.47234 * 187.22467 * 11 10 9 41 41 H 1.08998 * 110.72493 * 88.06106 * 14 12 9 42 42 H 1.08996 * 110.71986 * 324.78438 * 14 12 9 43 43 H 1.09000 * 109.88837 * 262.78020 * 15 14 12 44 44 H 1.09005 * 109.88645 * 141.60667 * 15 14 12 45 45 H 0.96997 * 120.00381 * 179.97438 * 20 19 17 46 46 H 1.08998 * 110.36648 * 94.71128 * 25 16 15 47 47 H 1.09001 * 110.37117 * 217.03810 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9329 0.8533 -0.8428 6 6 4.0806 0.8327 1.3063 7 6 4.0722 2.8580 -0.1245 8 8 3.4000 3.7784 0.2902 9 7 5.2683 3.1011 -0.6960 10 6 6.1368 1.9856 -1.0802 11 6 5.7382 1.4840 -2.4695 12 6 5.7001 4.4808 -0.9330 13 1 4.9281 5.1874 -0.6282 14 6 6.0927 4.6932 -2.4189 15 6 7.1052 5.8555 -2.3462 16 7 7.6461 5.8783 -0.9793 17 6 8.5656 6.7725 -0.4996 18 1 8.8316 6.7646 0.5471 19 6 9.1560 7.6891 -1.3588 20 7 8.7408 7.7861 -2.6040 21 14 10.5398 8.7851 -0.7478 22 1 11.8470 8.1645 -1.0818 23 1 10.4424 10.1156 -1.4001 24 1 10.4303 8.9464 0.7244 25 6 7.0393 4.7752 -0.2123 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9564 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 5.1640 0.9401 1.3584 34 1 3.6233 1.3483 2.1508 35 1 3.8182 -0.2247 1.3408 36 1 7.1735 2.3220 -1.0989 37 1 6.0303 1.1766 -0.3574 38 1 4.6698 1.2682 -2.4851 39 1 5.9652 2.2497 -3.2113 40 1 6.2955 0.5765 -2.7019 41 1 5.2226 4.9763 -3.0112 42 1 6.5624 3.7975 -2.8255 43 1 6.6032 6.7987 -2.5619 44 1 7.9114 5.6903 -3.0611 45 1 9.1531 8.4268 -3.2043 46 1 7.6841 3.8967 -0.2364 47 1 6.8563 5.0843 0.8168 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753453632.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:58 Heat of formation + Delta-G solvation = -45.688955 kcal Electronic energy + Delta-G solvation = -23532.251819 eV Core-core repulsion = 20328.436483 eV Total energy + Delta-G solvation = -3203.815337 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.48894 -39.19493 -36.89028 -36.69619 -34.27334 -32.74687 -31.54760 -30.99618 -28.89632 -27.57856 -26.61111 -25.09257 -24.03790 -22.30523 -21.99111 -21.05746 -19.77559 -18.96921 -18.48735 -17.19609 -16.69335 -16.41783 -16.13730 -15.83218 -15.39442 -15.04089 -14.67870 -14.57517 -14.34334 -14.22944 -13.82336 -13.73756 -13.57068 -13.32186 -13.17290 -12.97441 -12.86432 -12.82513 -12.67049 -12.32565 -12.16167 -12.05821 -12.03145 -11.85756 -11.82712 -11.79426 -11.56052 -11.43224 -11.38395 -10.72432 -10.59429 -9.67031 -8.92708 -7.88961 -5.25189 1.44790 1.46791 1.55940 1.61797 1.94380 2.48610 3.28973 3.46767 3.64048 3.81412 3.89373 3.96550 4.00378 4.07208 4.16396 4.31856 4.34447 4.39331 4.44724 4.49263 4.56167 4.61583 4.68478 4.81965 4.82684 4.89477 4.92396 4.93514 4.95369 5.03260 5.04484 5.14703 5.16344 5.25271 5.33147 5.41045 5.43241 5.48145 5.52842 5.60728 5.65341 5.69221 6.15209 6.48642 7.05760 7.19840 7.71567 8.36308 9.21612 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035574 B = 0.003542 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.897431 B = 7902.799321 C = 8025.063091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.117 4.117 3 C -0.100 4.100 4 C -0.103 4.103 5 H 0.121 0.879 6 C -0.141 4.141 7 C 0.510 3.490 8 O -0.593 6.593 9 N -0.595 5.595 10 C 0.092 3.908 11 C -0.173 4.173 12 C 0.138 3.862 13 H 0.073 0.927 14 C -0.135 4.135 15 C 0.188 3.812 16 N -0.625 5.625 17 C -0.247 4.247 18 H 0.080 0.920 19 C -0.062 4.062 20 N -0.948 5.948 21 Si 0.981 3.019 22 H -0.283 1.283 23 H -0.294 1.294 24 H -0.270 1.270 25 C 0.133 3.867 26 H 0.048 0.952 27 H 0.067 0.933 28 H 0.048 0.952 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.064 0.936 34 H 0.047 0.953 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.107 0.893 38 H 0.065 0.935 39 H 0.051 0.949 40 H 0.093 0.907 41 H 0.070 0.930 42 H 0.094 0.906 43 H 0.004 0.996 44 H 0.021 0.979 45 H 0.249 0.751 46 H 0.042 0.958 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.600 -21.723 2.588 24.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.139 4.139 4 C -0.124 4.124 5 H 0.138 0.862 6 C -0.198 4.198 7 C 0.301 3.699 8 O -0.473 6.473 9 N -0.326 5.326 10 C -0.029 4.029 11 C -0.231 4.231 12 C 0.033 3.967 13 H 0.091 0.909 14 C -0.173 4.173 15 C 0.063 3.937 16 N -0.351 5.351 17 C -0.376 4.376 18 H 0.098 0.902 19 C -0.256 4.256 20 N -0.597 5.597 21 Si 0.809 3.191 22 H -0.209 1.209 23 H -0.221 1.221 24 H -0.194 1.194 25 C 0.006 3.994 26 H 0.067 0.933 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.118 0.882 36 H 0.097 0.903 37 H 0.125 0.875 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.112 0.888 41 H 0.089 0.911 42 H 0.112 0.888 43 H 0.022 0.978 44 H 0.039 0.961 45 H 0.058 0.942 46 H 0.060 0.940 47 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -10.824 -21.087 2.742 23.861 hybrid contribution 0.771 1.596 0.040 1.773 sum -10.053 -19.491 2.782 22.107 Atomic orbital electron populations 1.21787 0.95834 1.02155 1.01470 1.21549 0.95928 0.94630 1.03341 1.21450 0.92368 0.98363 1.01677 1.21503 0.97521 0.90715 1.02662 0.86168 1.21826 1.01347 1.02419 0.94195 1.21587 0.80053 0.92723 0.75575 1.90657 1.58146 1.48460 1.50070 1.48024 1.18349 1.06184 1.60044 1.21924 0.94568 0.88305 0.98150 1.22399 1.02601 1.02323 0.95786 1.21875 0.95576 0.83648 0.95624 0.90905 1.23164 0.99028 0.99698 0.95440 1.20894 0.92925 0.93811 0.86096 1.44665 1.48804 1.32389 1.09291 1.19431 1.14206 1.10003 0.93965 0.90191 1.25693 1.02288 1.01402 0.96195 1.70184 1.44285 1.39154 1.06057 0.85032 0.79020 0.77389 0.77706 1.20934 1.22065 1.19438 1.21862 0.92360 0.90983 0.94154 0.93297 0.91400 0.93329 0.90584 0.90399 0.92974 0.93304 0.91741 0.93378 0.88226 0.90307 0.87532 0.91626 0.93015 0.88801 0.91103 0.88818 0.97789 0.96121 0.94212 0.94027 0.95350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.91 71.98 0.71 -1.29 16 2 C -0.12 -1.48 5.69 30.60 0.17 -1.31 16 3 C -0.10 -1.96 4.16 30.60 0.13 -1.83 16 4 C -0.10 -1.96 1.89 -11.54 -0.02 -1.99 16 5 H 0.12 1.67 5.23 -2.39 -0.01 1.66 16 6 C -0.14 -2.15 8.51 71.98 0.61 -1.54 16 7 C 0.51 15.24 6.70 87.66 0.59 15.83 16 8 O -0.59 -23.63 15.64 -3.03 -0.05 -23.68 16 9 N -0.60 -17.34 2.52 -790.15 -2.00 -19.33 16 10 C 0.09 1.88 4.87 86.38 0.42 2.30 16 11 C -0.17 -2.86 9.60 71.98 0.69 -2.17 16 12 C 0.14 5.29 3.44 46.38 0.16 5.45 16 13 H 0.07 3.27 7.04 -2.39 -0.02 3.25 16 14 C -0.13 -5.12 6.27 31.78 0.20 -4.92 16 15 C 0.19 9.57 5.38 86.73 0.47 10.03 16 16 N -0.62 -33.34 3.39 -691.97 -2.35 -35.69 16 17 C -0.25 -14.30 10.27 84.03 0.86 -13.44 16 18 H 0.08 4.46 7.84 -2.91 -0.02 4.43 16 19 C -0.06 -3.63 5.48 84.86 0.47 -3.16 16 20 N -0.95 -57.90 10.36 21.65 0.22 -57.68 16 21 Si 0.98 46.49 29.56 68.60 2.03 48.51 16 22 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 23 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 24 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 25 C 0.13 5.73 6.79 86.86 0.59 6.32 16 26 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.08 0.80 6.72 -2.39 -0.02 0.79 16 31 H 0.05 1.23 8.02 -2.39 -0.02 1.21 16 32 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.06 0.95 6.73 -2.39 -0.02 0.94 16 34 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.10 0.92 6.90 -2.39 -0.02 0.91 16 36 H 0.08 1.83 6.33 -2.39 -0.02 1.81 16 37 H 0.11 1.54 5.56 -2.39 -0.01 1.53 16 38 H 0.06 0.99 6.51 -2.38 -0.02 0.97 16 39 H 0.05 1.05 5.81 -2.39 -0.01 1.04 16 40 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 42 H 0.09 3.08 4.96 -2.39 -0.01 3.06 16 43 H 0.00 0.22 7.55 -2.39 -0.02 0.20 16 44 H 0.02 1.15 7.36 -2.38 -0.02 1.13 16 45 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 46 H 0.04 1.65 6.31 -2.39 -0.02 1.64 16 47 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -73.49 352.22 4.84 -68.65 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 0.94 Total: 10.91 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: 6.05 Total: 8.29 kcal Atomic # 7 Polarization: -108.57 SS G_CDS: -4.12 Total: -112.69 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.05 Total: -23.68 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.51 kcal Total: -73.49 4.84 -68.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753453632.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.962 kcal (2) G-P(sol) polarization free energy of solvation -73.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds