Wall clock time and date at job start Tue Mar 31 2020 06:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46633 * 2 1 4 4 C 1.53005 * 109.46633 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.46818 * 55.00165 * 4 3 2 6 6 C 1.52998 * 109.47285 * 295.00092 * 4 3 2 7 7 C 1.50696 * 109.46954 * 175.00044 * 4 3 2 8 8 O 1.21284 * 120.00186 * 16.90234 * 7 4 3 9 9 N 1.34779 * 120.00013 * 196.90737 * 7 4 3 10 10 C 1.46506 * 119.99831 * 2.53968 * 9 7 4 11 11 C 1.52996 * 109.46987 * 82.85418 * 10 9 7 12 12 C 1.46502 * 120.00111 * 182.53911 * 9 7 4 13 13 H 1.09004 * 110.88478 * 357.94055 * 12 9 7 14 14 C 1.55164 * 111.00242 * 121.85612 * 12 9 7 15 15 C 1.54317 * 102.94116 * 153.57731 * 14 12 9 16 16 N 1.47020 * 107.27126 * 337.80905 * 15 14 12 17 17 C 1.36939 * 125.64654 * 178.97480 * 16 15 14 18 18 H 1.08004 * 119.99946 * 179.97438 * 17 16 15 19 19 C 1.38811 * 120.00368 * 359.95980 * 17 16 15 20 20 N 1.31624 * 119.99510 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00205 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46956 * 90.00000 * 21 19 17 23 23 H 1.48499 * 109.47164 * 209.99970 * 21 19 17 24 24 H 1.48500 * 109.47102 * 330.00103 * 21 19 17 25 25 C 1.47421 * 108.70477 * 358.93913 * 16 15 14 26 26 H 1.08998 * 109.47096 * 60.00479 * 1 2 3 27 27 H 1.09002 * 109.46756 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47041 * 299.99820 * 1 2 3 29 29 H 1.08998 * 109.47041 * 240.00180 * 2 1 3 30 30 H 1.08994 * 109.47060 * 120.00011 * 2 1 3 31 31 H 1.08998 * 109.47260 * 60.00314 * 3 2 1 32 32 H 1.08998 * 109.46989 * 299.99586 * 3 2 1 33 33 H 1.08992 * 109.47222 * 186.17528 * 6 4 3 34 34 H 1.09005 * 109.46711 * 306.17154 * 6 4 3 35 35 H 1.08994 * 109.47260 * 66.16811 * 6 4 3 36 36 H 1.08998 * 109.46626 * 202.85606 * 10 9 7 37 37 H 1.09000 * 109.46812 * 322.85128 * 10 9 7 38 38 H 1.09004 * 109.47075 * 174.66108 * 11 10 9 39 39 H 1.08997 * 109.47145 * 294.66422 * 11 10 9 40 40 H 1.09008 * 109.47206 * 54.66399 * 11 10 9 41 41 H 1.08998 * 110.72075 * 271.94778 * 14 12 9 42 42 H 1.09002 * 110.71519 * 35.03546 * 14 12 9 43 43 H 1.09004 * 109.88174 * 97.22417 * 15 14 12 44 44 H 1.09001 * 109.88538 * 218.23482 * 15 14 12 45 45 H 0.97000 * 119.99681 * 179.97438 * 20 19 17 46 46 H 1.09002 * 110.36895 * 265.29042 * 25 16 15 47 47 H 1.09000 * 110.36842 * 142.96682 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9336 0.8530 -0.8410 6 6 4.0795 0.8331 1.3083 7 6 4.0723 2.8580 -0.1232 8 8 3.3269 3.7879 0.1016 9 7 5.3500 3.0905 -0.4838 10 6 6.2348 1.9691 -0.8093 11 6 6.0072 1.5449 -2.2616 12 6 5.8540 4.4645 -0.5502 13 1 5.0654 5.1794 -0.3151 14 6 7.0757 4.6546 0.3873 15 6 7.8471 5.8121 -0.2809 16 7 7.4399 5.8503 -1.6930 17 6 7.8824 6.7485 -2.6272 18 1 7.5216 6.6924 -3.6437 19 6 8.7943 7.7314 -2.2678 20 7 9.2333 7.8002 -1.0288 21 14 9.3984 8.9562 -3.5422 22 1 8.5029 10.1407 -3.5537 23 1 10.7796 9.3830 -3.2029 24 1 9.3927 8.3184 -4.8833 25 6 6.4770 4.7610 -1.9370 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 5.1637 0.9325 1.3572 34 1 3.6283 1.3550 2.1523 35 1 3.8091 -0.2220 1.3469 36 1 7.2727 2.2755 -0.6787 37 1 6.0175 1.1308 -0.1475 38 1 6.7299 0.7752 -2.5328 39 1 4.9973 1.1496 -2.3706 40 1 6.1324 2.4076 -2.9160 41 1 6.7526 4.9345 1.3900 42 1 7.6828 3.7498 0.4178 43 1 7.5936 6.7550 0.2037 44 1 8.9200 5.6342 -0.2067 45 1 9.8709 8.4868 -0.7777 46 1 6.9910 3.8787 -2.3185 47 1 5.7071 5.0849 -2.6373 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753453633.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:03 Heat of formation + Delta-G solvation = -26.782722 kcal Electronic energy + Delta-G solvation = -23547.844367 eV Core-core repulsion = 20344.848866 eV Total energy + Delta-G solvation = -3202.995501 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.24817 -37.61085 -35.94638 -35.25821 -32.56018 -31.73964 -30.40624 -28.98798 -27.35067 -26.81580 -24.77453 -23.89078 -23.05147 -21.26245 -20.09944 -19.84175 -18.59694 -17.23291 -16.87546 -15.93410 -15.61129 -15.05283 -14.64673 -14.38859 -13.97789 -13.94159 -13.79771 -13.29018 -13.05253 -12.79837 -12.51192 -12.36203 -12.33604 -12.19824 -12.13070 -11.90946 -11.61746 -11.30853 -11.11583 -11.04854 -10.94468 -10.82169 -10.75557 -10.69933 -10.66403 -10.24505 -10.08549 -9.77201 -9.69049 -9.36825 -8.60801 -8.31259 -6.82791 -5.70574 -3.04545 2.82854 3.18029 3.41348 3.46216 3.47948 4.45522 4.51568 4.59993 4.76517 4.93430 5.00894 5.04983 5.14174 5.22339 5.25765 5.45240 5.45887 5.48988 5.50065 5.61663 5.62215 5.65424 5.70611 5.74172 5.79562 5.80572 5.87129 5.87484 5.94070 5.99204 6.14363 6.19375 6.24695 6.33922 6.35219 6.51858 6.62273 6.75552 7.02979 7.55635 7.60756 7.68855 7.83084 8.25397 8.42385 9.22119 9.82210 10.47512 11.41004 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033600 B = 0.003562 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.140190 B = 7858.184114 C = 7917.133245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.101 4.101 4 C -0.113 4.113 5 H 0.094 0.906 6 C -0.145 4.145 7 C 0.517 3.483 8 O -0.544 6.544 9 N -0.597 5.597 10 C 0.098 3.902 11 C -0.177 4.177 12 C 0.122 3.878 13 H 0.104 0.896 14 C -0.152 4.152 15 C 0.180 3.820 16 N -0.603 5.603 17 C -0.228 4.228 18 H 0.078 0.922 19 C -0.008 4.008 20 N -0.922 5.922 21 Si 0.913 3.087 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.129 3.871 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.053 0.947 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.048 0.952 44 H 0.045 0.955 45 H 0.252 0.748 46 H 0.027 0.973 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.302 -18.512 3.265 21.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.139 4.139 4 C -0.134 4.134 5 H 0.112 0.888 6 C -0.202 4.202 7 C 0.305 3.695 8 O -0.421 6.421 9 N -0.328 5.328 10 C -0.025 4.025 11 C -0.235 4.235 12 C 0.018 3.982 13 H 0.122 0.878 14 C -0.192 4.192 15 C 0.055 3.945 16 N -0.330 5.330 17 C -0.356 4.356 18 H 0.096 0.904 19 C -0.204 4.204 20 N -0.570 5.570 21 Si 0.743 3.257 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.002 3.998 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.066 0.934 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.045 0.955 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.532 -17.819 3.375 20.972 hybrid contribution 0.514 0.673 -0.694 1.095 sum -10.018 -17.146 2.682 20.038 Atomic orbital electron populations 1.21764 0.95870 1.01340 1.02011 1.21586 0.95917 0.96769 1.01945 1.21449 0.92489 0.96476 1.03482 1.21407 0.97557 0.93940 1.00506 0.88815 1.21845 1.01434 1.00955 0.95957 1.20624 0.81478 0.91231 0.76215 1.90676 1.55413 1.45766 1.50282 1.47962 1.10770 1.07314 1.66794 1.21644 0.95831 0.88912 0.96149 1.22396 1.01557 1.02409 0.97181 1.22435 0.96498 0.81716 0.97514 0.87767 1.23243 0.96680 1.00670 0.98567 1.21125 0.96342 0.93558 0.83486 1.44389 1.48836 1.32724 1.07054 1.19052 1.20039 1.06060 0.90445 0.90434 1.24808 0.99689 0.99222 0.96700 1.69963 1.35167 1.35766 1.16061 0.86104 0.77915 0.81302 0.80347 1.21575 1.21672 1.20701 1.21867 0.92192 0.92054 0.93691 0.92723 0.92923 0.92690 0.92124 0.91796 0.91042 0.91542 0.91859 0.91966 0.91418 0.89489 0.90519 0.91632 0.92763 0.91044 0.92034 0.92183 0.93387 0.93723 0.93735 0.95529 0.94337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.16 0.37 -0.79 16 2 C -0.12 -0.99 5.69 -26.73 -0.15 -1.14 16 3 C -0.10 -1.07 4.03 -26.73 -0.11 -1.18 16 4 C -0.11 -1.22 1.89 -91.77 -0.17 -1.40 16 5 H 0.09 0.88 5.65 -51.93 -0.29 0.58 16 6 C -0.14 -1.30 8.45 37.16 0.31 -0.99 16 7 C 0.52 7.94 6.81 -10.99 -0.07 7.87 16 8 O -0.54 -10.58 15.48 5.55 0.09 -10.49 16 9 N -0.60 -9.07 2.53 -163.67 -0.41 -9.49 16 10 C 0.10 1.16 4.77 -4.04 -0.02 1.14 16 11 C -0.18 -1.93 9.78 37.16 0.36 -1.56 16 12 C 0.12 2.32 3.45 -65.78 -0.23 2.09 16 13 H 0.10 2.25 7.01 -51.93 -0.36 1.88 16 14 C -0.15 -2.92 6.49 -24.90 -0.16 -3.08 16 15 C 0.18 4.41 5.37 -3.07 -0.02 4.40 16 16 N -0.60 -15.62 3.39 -170.08 -0.58 -16.20 16 17 C -0.23 -6.43 10.28 -15.06 -0.15 -6.58 16 18 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 19 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 20 N -0.92 -27.28 10.31 55.49 0.57 -26.70 16 21 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 C 0.13 2.73 6.38 -2.53 -0.02 2.72 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.46 6.70 -51.93 -0.35 0.11 16 31 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.56 6.15 -51.93 -0.32 0.24 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.47 6.87 -51.93 -0.36 0.11 16 36 H 0.09 1.11 6.30 -51.93 -0.33 0.78 16 37 H 0.08 0.71 4.93 -51.93 -0.26 0.46 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.05 0.53 6.47 -51.93 -0.34 0.20 16 40 H 0.07 0.94 6.00 -51.92 -0.31 0.63 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.06 1.03 6.36 -51.93 -0.33 0.70 16 43 H 0.05 1.31 7.38 -51.93 -0.38 0.93 16 44 H 0.04 1.19 7.51 -51.93 -0.39 0.80 16 45 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 46 H 0.03 0.54 5.30 -51.93 -0.28 0.26 16 47 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 351.51 15.07 5.30 5.30 Total: -1.00 -32.02 351.51 -8.27 -40.29 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -8.06 Total: -1.17 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -0.15 Total: 1.17 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: -0.42 Total: -52.39 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.02 -8.27 -40.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753453633.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.511 kcal (2) G-P(sol) polarization free energy of solvation -32.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds