Wall clock time and date at job start Tue Mar 31 2020 06:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46633 * 2 1 4 4 C 1.53005 * 109.46633 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.46818 * 55.00165 * 4 3 2 6 6 C 1.52998 * 109.47285 * 295.00092 * 4 3 2 7 7 C 1.50696 * 109.46954 * 175.00044 * 4 3 2 8 8 O 1.21284 * 120.00186 * 16.90234 * 7 4 3 9 9 N 1.34779 * 120.00013 * 196.90737 * 7 4 3 10 10 C 1.46506 * 119.99831 * 2.53968 * 9 7 4 11 11 C 1.52996 * 109.46987 * 82.85418 * 10 9 7 12 12 C 1.46502 * 120.00111 * 182.53911 * 9 7 4 13 13 H 1.09004 * 110.88478 * 357.94055 * 12 9 7 14 14 C 1.55164 * 111.00242 * 121.85612 * 12 9 7 15 15 C 1.54317 * 102.94116 * 153.57731 * 14 12 9 16 16 N 1.47020 * 107.27126 * 337.80905 * 15 14 12 17 17 C 1.36939 * 125.64654 * 178.97480 * 16 15 14 18 18 H 1.08004 * 119.99946 * 179.97438 * 17 16 15 19 19 C 1.38811 * 120.00368 * 359.95980 * 17 16 15 20 20 N 1.31624 * 119.99510 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00205 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46956 * 90.00000 * 21 19 17 23 23 H 1.48499 * 109.47164 * 209.99970 * 21 19 17 24 24 H 1.48500 * 109.47102 * 330.00103 * 21 19 17 25 25 C 1.47421 * 108.70477 * 358.93913 * 16 15 14 26 26 H 1.08998 * 109.47096 * 60.00479 * 1 2 3 27 27 H 1.09002 * 109.46756 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47041 * 299.99820 * 1 2 3 29 29 H 1.08998 * 109.47041 * 240.00180 * 2 1 3 30 30 H 1.08994 * 109.47060 * 120.00011 * 2 1 3 31 31 H 1.08998 * 109.47260 * 60.00314 * 3 2 1 32 32 H 1.08998 * 109.46989 * 299.99586 * 3 2 1 33 33 H 1.08992 * 109.47222 * 186.17528 * 6 4 3 34 34 H 1.09005 * 109.46711 * 306.17154 * 6 4 3 35 35 H 1.08994 * 109.47260 * 66.16811 * 6 4 3 36 36 H 1.08998 * 109.46626 * 202.85606 * 10 9 7 37 37 H 1.09000 * 109.46812 * 322.85128 * 10 9 7 38 38 H 1.09004 * 109.47075 * 174.66108 * 11 10 9 39 39 H 1.08997 * 109.47145 * 294.66422 * 11 10 9 40 40 H 1.09008 * 109.47206 * 54.66399 * 11 10 9 41 41 H 1.08998 * 110.72075 * 271.94778 * 14 12 9 42 42 H 1.09002 * 110.71519 * 35.03546 * 14 12 9 43 43 H 1.09004 * 109.88174 * 97.22417 * 15 14 12 44 44 H 1.09001 * 109.88538 * 218.23482 * 15 14 12 45 45 H 0.97000 * 119.99681 * 179.97438 * 20 19 17 46 46 H 1.09002 * 110.36895 * 265.29042 * 25 16 15 47 47 H 1.09000 * 110.36842 * 142.96682 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9336 0.8530 -0.8410 6 6 4.0795 0.8331 1.3083 7 6 4.0723 2.8580 -0.1232 8 8 3.3269 3.7879 0.1016 9 7 5.3500 3.0905 -0.4838 10 6 6.2348 1.9691 -0.8093 11 6 6.0072 1.5449 -2.2616 12 6 5.8540 4.4645 -0.5502 13 1 5.0654 5.1794 -0.3151 14 6 7.0757 4.6546 0.3873 15 6 7.8471 5.8121 -0.2809 16 7 7.4399 5.8503 -1.6930 17 6 7.8824 6.7485 -2.6272 18 1 7.5216 6.6924 -3.6437 19 6 8.7943 7.7314 -2.2678 20 7 9.2333 7.8002 -1.0288 21 14 9.3984 8.9562 -3.5422 22 1 8.5029 10.1407 -3.5537 23 1 10.7796 9.3830 -3.2029 24 1 9.3927 8.3184 -4.8833 25 6 6.4770 4.7610 -1.9370 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 5.1637 0.9325 1.3572 34 1 3.6283 1.3550 2.1523 35 1 3.8091 -0.2220 1.3469 36 1 7.2727 2.2755 -0.6787 37 1 6.0175 1.1308 -0.1475 38 1 6.7299 0.7752 -2.5328 39 1 4.9973 1.1496 -2.3706 40 1 6.1324 2.4076 -2.9160 41 1 6.7526 4.9345 1.3900 42 1 7.6828 3.7498 0.4178 43 1 7.5936 6.7550 0.2037 44 1 8.9200 5.6342 -0.2067 45 1 9.8709 8.4868 -0.7777 46 1 6.9910 3.8787 -2.3185 47 1 5.7071 5.0849 -2.6373 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753453633.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:02 Heat of formation + Delta-G solvation = -45.635072 kcal Electronic energy + Delta-G solvation = -23548.661866 eV Core-core repulsion = 20344.848866 eV Total energy + Delta-G solvation = -3203.813000 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.49158 -39.18749 -36.89206 -36.68515 -34.29296 -32.73988 -31.71576 -30.69887 -29.04504 -27.55593 -26.57553 -25.06229 -24.06042 -22.27341 -22.04041 -21.05068 -19.82459 -18.89120 -18.43004 -17.19456 -16.70829 -16.51835 -16.10468 -15.87298 -15.38910 -15.02642 -14.74822 -14.50834 -14.30063 -14.11970 -13.89102 -13.74766 -13.53832 -13.33172 -13.16730 -12.95917 -12.90187 -12.80734 -12.64594 -12.30079 -12.15124 -12.05414 -12.04101 -11.87828 -11.80542 -11.79416 -11.57047 -11.43139 -11.38500 -10.73986 -10.60424 -9.65851 -8.93048 -7.87580 -5.24428 1.44464 1.47103 1.55550 1.63211 1.94699 2.48785 3.30869 3.46749 3.65274 3.81121 3.87595 3.96125 4.00406 4.07508 4.16259 4.33893 4.35871 4.39279 4.44693 4.49808 4.56390 4.59519 4.71114 4.81267 4.83682 4.85454 4.90578 4.94209 4.99116 5.03614 5.06104 5.15190 5.16368 5.26731 5.33249 5.39577 5.43636 5.49525 5.53072 5.58847 5.65074 5.70213 6.15736 6.49000 7.06377 7.20490 7.72330 8.36530 9.22616 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033600 B = 0.003562 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.140190 B = 7858.184114 C = 7917.133245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.117 4.117 3 C -0.100 4.100 4 C -0.103 4.103 5 H 0.119 0.881 6 C -0.142 4.142 7 C 0.510 3.490 8 O -0.594 6.594 9 N -0.594 5.594 10 C 0.091 3.909 11 C -0.174 4.174 12 C 0.137 3.863 13 H 0.072 0.928 14 C -0.133 4.133 15 C 0.189 3.811 16 N -0.625 5.625 17 C -0.245 4.245 18 H 0.081 0.919 19 C -0.064 4.064 20 N -0.950 5.950 21 Si 0.981 3.019 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.267 1.267 25 C 0.132 3.868 26 H 0.046 0.954 27 H 0.067 0.933 28 H 0.048 0.952 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.051 0.949 32 H 0.046 0.954 33 H 0.069 0.931 34 H 0.048 0.952 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.113 0.887 38 H 0.091 0.909 39 H 0.067 0.933 40 H 0.042 0.958 41 H 0.071 0.929 42 H 0.088 0.912 43 H 0.008 0.992 44 H 0.018 0.982 45 H 0.248 0.752 46 H 0.050 0.950 47 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.395 -21.775 2.833 24.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.155 4.155 3 C -0.138 4.138 4 C -0.123 4.123 5 H 0.137 0.863 6 C -0.199 4.199 7 C 0.300 3.700 8 O -0.474 6.474 9 N -0.325 5.325 10 C -0.030 4.030 11 C -0.232 4.232 12 C 0.031 3.969 13 H 0.090 0.910 14 C -0.172 4.172 15 C 0.064 3.936 16 N -0.352 5.352 17 C -0.374 4.374 18 H 0.099 0.901 19 C -0.257 4.257 20 N -0.599 5.599 21 Si 0.809 3.191 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.192 1.192 25 C 0.006 3.994 26 H 0.066 0.934 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.117 0.883 36 H 0.100 0.900 37 H 0.131 0.869 38 H 0.110 0.890 39 H 0.086 0.914 40 H 0.061 0.939 41 H 0.089 0.911 42 H 0.107 0.893 43 H 0.026 0.974 44 H 0.036 0.964 45 H 0.057 0.943 46 H 0.067 0.933 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -10.635 -21.141 2.927 23.845 hybrid contribution 0.488 1.675 -0.573 1.836 sum -10.147 -19.466 2.354 22.077 Atomic orbital electron populations 1.21789 0.95885 1.02138 1.01443 1.21556 0.95909 0.94677 1.03331 1.21431 0.92522 0.98187 1.01636 1.21467 0.97439 0.90736 1.02702 0.86301 1.21879 1.01634 1.02420 0.93994 1.21584 0.80810 0.92833 0.74772 1.90659 1.56669 1.47768 1.52321 1.48009 1.11470 1.06372 1.66627 1.21976 0.94750 0.88539 0.97748 1.22365 1.03260 1.01981 0.95627 1.21904 0.95281 0.83852 0.95834 0.90958 1.23046 0.96241 0.99575 0.98317 1.20858 0.95484 0.93912 0.83382 1.44676 1.49739 1.33550 1.07243 1.19438 1.20038 1.06736 0.91197 0.90094 1.25680 1.00162 1.01168 0.98736 1.70181 1.35614 1.36280 1.17843 0.85046 0.76909 0.78685 0.78481 1.21525 1.21732 1.19167 1.21973 0.91213 0.91348 0.94843 0.93435 0.91390 0.93259 0.90730 0.90238 0.92969 0.93538 0.91201 0.93239 0.88279 0.90046 0.86900 0.89031 0.91427 0.93875 0.91075 0.89313 0.97406 0.96411 0.94265 0.93280 0.95539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 9.91 71.98 0.71 -1.33 16 2 C -0.12 -1.51 5.69 30.60 0.17 -1.33 16 3 C -0.10 -1.97 4.03 30.60 0.12 -1.85 16 4 C -0.10 -1.94 1.89 -11.54 -0.02 -1.96 16 5 H 0.12 1.68 5.65 -2.38 -0.01 1.67 16 6 C -0.14 -2.02 8.45 71.98 0.61 -1.41 16 7 C 0.51 15.18 6.81 87.66 0.60 15.78 16 8 O -0.59 -23.65 15.48 -3.04 -0.05 -23.69 16 9 N -0.59 -17.23 2.53 -790.11 -2.00 -19.23 16 10 C 0.09 1.85 4.77 86.38 0.41 2.26 16 11 C -0.17 -3.19 9.78 71.98 0.70 -2.49 16 12 C 0.14 5.23 3.45 46.38 0.16 5.39 16 13 H 0.07 3.26 7.01 -2.38 -0.02 3.24 16 14 C -0.13 -5.07 6.49 31.78 0.21 -4.86 16 15 C 0.19 9.62 5.37 86.73 0.47 10.08 16 16 N -0.63 -33.27 3.39 -692.01 -2.35 -35.62 16 17 C -0.25 -14.15 10.28 84.03 0.86 -13.29 16 18 H 0.08 4.48 7.83 -2.91 -0.02 4.45 16 19 C -0.06 -3.74 5.49 84.86 0.47 -3.28 16 20 N -0.95 -58.14 10.31 21.65 0.22 -57.92 16 21 Si 0.98 46.57 29.55 68.60 2.03 48.59 16 22 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 23 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 25 C 0.13 5.66 6.38 86.85 0.55 6.22 16 26 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.05 0.69 8.14 -2.39 -0.02 0.68 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.08 0.80 6.70 -2.39 -0.02 0.79 16 31 H 0.05 1.22 8.08 -2.39 -0.02 1.20 16 32 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.07 0.92 6.15 -2.39 -0.01 0.90 16 34 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.10 0.84 6.87 -2.39 -0.02 0.82 16 36 H 0.08 1.79 6.30 -2.39 -0.02 1.78 16 37 H 0.11 1.53 4.93 -2.39 -0.01 1.52 16 38 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 39 H 0.07 1.06 6.47 -2.39 -0.02 1.04 16 40 H 0.04 1.05 6.00 -2.38 -0.01 1.03 16 41 H 0.07 2.58 8.14 -2.39 -0.02 2.57 16 42 H 0.09 2.89 6.36 -2.39 -0.02 2.87 16 43 H 0.01 0.45 7.38 -2.38 -0.02 0.43 16 44 H 0.02 0.98 7.51 -2.39 -0.02 0.97 16 45 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 46 H 0.05 1.92 5.30 -2.39 -0.01 1.91 16 47 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -73.68 351.51 4.82 -68.86 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: 0.94 Total: 11.06 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: 6.02 Total: 7.94 kcal Atomic # 7 Polarization: -108.63 SS G_CDS: -4.12 Total: -112.76 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.05 Total: -23.69 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.59 kcal Total: -73.68 4.82 -68.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753453633.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.228 kcal (2) G-P(sol) polarization free energy of solvation -73.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds