Wall clock time and date at job start Tue Mar 31 2020 05:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.47172 * 2 1 4 4 C 1.52997 * 109.46954 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47141 * 180.02562 * 4 3 2 6 6 O 1.21283 * 119.99782 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00404 * 180.02562 * 5 4 3 8 8 C 1.46929 * 120.62762 * 354.86522 * 7 5 4 9 9 C 1.53185 * 108.77423 * 233.58437 * 8 7 5 10 10 C 1.53039 * 109.31507 * 305.36492 * 9 8 7 11 11 C 1.53046 * 109.53939 * 61.36415 * 10 9 8 12 12 C 1.46921 * 120.63186 * 174.57902 * 7 5 4 13 13 H 1.08991 * 109.59462 * 246.20060 * 12 7 5 14 14 C 1.52997 * 109.58792 * 6.63501 * 12 7 5 15 15 C 1.53005 * 109.47409 * 181.22530 * 14 12 7 16 16 N 1.46503 * 109.47188 * 174.73395 * 15 14 12 17 17 C 1.36935 * 119.99904 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99632 * 0.02562 * 17 16 15 19 19 C 1.38812 * 119.99984 * 180.02562 * 17 16 15 20 20 N 1.31623 * 119.99980 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00020 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46897 * 59.99677 * 21 19 17 23 23 H 1.48495 * 109.47248 * 180.02562 * 21 19 17 24 24 H 1.48510 * 109.46820 * 299.99905 * 21 19 17 25 25 H 1.08999 * 109.47141 * 59.99561 * 1 2 3 26 26 H 1.09000 * 109.46553 * 299.99948 * 1 2 3 27 27 H 1.09000 * 109.46833 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47141 * 120.00438 * 2 1 3 29 29 H 1.09002 * 109.46885 * 240.00748 * 2 1 3 30 30 H 1.09000 * 109.46961 * 300.00444 * 3 2 1 31 31 H 1.09002 * 109.46605 * 60.00576 * 3 2 1 32 32 H 1.09000 * 109.47492 * 300.00758 * 4 3 2 33 33 H 1.09002 * 109.47073 * 60.00766 * 4 3 2 34 34 H 1.08994 * 109.58819 * 353.37358 * 8 7 5 35 35 H 1.09003 * 109.58492 * 113.65255 * 8 7 5 36 36 H 1.09002 * 109.50304 * 65.31635 * 9 8 7 37 37 H 1.09000 * 109.49751 * 185.41665 * 9 8 7 38 38 H 1.09002 * 109.46398 * 181.38485 * 10 9 8 39 39 H 1.09001 * 109.46284 * 301.34764 * 10 9 8 40 40 H 1.09000 * 109.49479 * 58.58593 * 11 10 9 41 41 H 1.08997 * 109.49784 * 178.64991 * 11 10 9 42 42 H 1.09003 * 109.46710 * 301.22687 * 14 12 7 43 43 H 1.09003 * 109.47579 * 61.22648 * 14 12 7 44 44 H 1.08995 * 109.46905 * 294.74110 * 15 14 12 45 45 H 1.09001 * 109.46581 * 54.73888 * 15 14 12 46 46 H 0.96997 * 119.99885 * 0.02562 * 16 15 14 47 47 H 0.96991 * 119.99685 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0724 2.8632 0.0000 6 8 3.2843 3.7851 0.0013 7 7 5.3975 3.1096 -0.0009 8 6 6.3637 2.0082 0.1106 9 6 7.3183 2.3055 1.2712 10 6 7.9550 3.6815 1.0632 11 6 6.8631 4.7539 1.0491 12 6 5.9034 4.4838 -0.1198 13 1 6.4336 4.5976 -1.0652 14 6 4.7332 5.4678 -0.0629 15 6 5.2598 6.8961 -0.2175 16 7 4.1313 7.8276 -0.2892 17 6 4.3599 9.1704 -0.4298 18 1 5.3720 9.5426 -0.4882 19 6 3.2906 10.0530 -0.4972 20 7 2.0572 9.5992 -0.4264 21 14 3.6023 11.8848 -0.6897 22 1 4.3500 12.1299 -1.9492 23 1 2.3049 12.6056 -0.7353 24 1 4.4001 12.3750 0.4630 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 1.6767 1.9564 -0.8900 31 1 1.6768 1.9563 0.8901 32 1 3.9338 0.9284 0.8890 33 1 3.9330 0.9289 -0.8909 34 1 5.8338 1.0754 0.3030 35 1 6.9289 1.9226 -0.8175 36 1 6.7634 2.2995 2.2094 37 1 8.0984 1.5450 1.3044 38 1 8.6533 3.8850 1.8750 39 1 8.4891 3.6947 0.1131 40 1 6.3125 4.7248 1.9893 41 1 7.3193 5.7360 0.9249 42 1 4.0347 5.2487 -0.8704 43 1 4.2229 5.3706 0.8954 44 1 5.8848 7.1476 0.6394 45 1 5.8496 6.9688 -1.1313 46 1 3.2224 7.4931 -0.2370 47 1 1.3101 10.2160 -0.4739 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753773194.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:15 Heat of formation + Delta-G solvation = -39.778264 kcal Electronic energy + Delta-G solvation = -23002.330691 eV Core-core repulsion = 19798.771661 eV Total energy + Delta-G solvation = -3203.559030 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.50091 -37.53850 -35.59546 -34.97956 -33.03796 -32.70139 -30.74595 -30.20337 -27.77653 -25.56490 -24.33510 -23.87114 -22.27828 -21.29469 -20.85911 -20.42397 -18.80359 -17.08267 -16.41873 -16.09436 -15.92817 -15.05591 -14.62519 -14.54804 -14.34805 -14.01123 -13.71578 -13.62338 -13.44838 -13.08728 -12.95451 -12.74239 -12.49707 -12.37514 -12.03047 -11.52010 -11.39290 -11.23785 -11.19875 -11.03188 -10.97044 -10.88254 -10.76820 -10.71551 -10.66323 -10.39690 -10.27783 -9.93614 -9.55293 -8.73474 -8.69194 -8.38501 -6.75202 -5.61760 -2.89817 2.78540 3.01840 3.52028 3.55332 3.57349 4.41628 4.58972 4.70762 4.71763 4.74628 4.82054 4.84056 5.01938 5.08011 5.15551 5.22693 5.24697 5.31890 5.40989 5.52526 5.61596 5.63869 5.68978 5.69140 5.70142 5.78219 5.80651 5.84916 5.98322 6.02099 6.04534 6.14528 6.19739 6.29376 6.30187 6.44185 6.46857 6.63287 6.76225 7.14671 7.26019 7.54168 7.80808 8.39205 8.57391 9.67569 10.30292 10.65272 11.61203 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013758 B = 0.004136 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.672897 B = 6767.979459 C = 8656.493953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.107 4.107 4 C -0.140 4.140 5 C 0.505 3.495 6 O -0.513 6.513 7 N -0.614 5.614 8 C 0.108 3.892 9 C -0.135 4.135 10 C -0.120 4.120 11 C -0.133 4.133 12 C 0.152 3.848 13 H 0.069 0.931 14 C -0.111 4.111 15 C 0.147 3.853 16 N -0.731 5.731 17 C -0.237 4.237 18 H 0.068 0.932 19 C -0.016 4.016 20 N -0.933 5.933 21 Si 0.906 3.094 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.287 1.287 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.071 0.929 44 H 0.014 0.986 45 H 0.011 0.989 46 H 0.386 0.614 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.349 -24.217 2.253 25.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.145 4.145 4 C -0.180 4.180 5 C 0.293 3.707 6 O -0.389 6.389 7 N -0.349 5.349 8 C -0.015 4.015 9 C -0.173 4.173 10 C -0.158 4.158 11 C -0.171 4.171 12 C 0.049 3.951 13 H 0.087 0.913 14 C -0.149 4.149 15 C 0.019 3.981 16 N -0.375 5.375 17 C -0.369 4.369 18 H 0.086 0.914 19 C -0.212 4.212 20 N -0.582 5.582 21 Si 0.737 3.263 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.214 1.214 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.105 0.895 43 H 0.089 0.911 44 H 0.032 0.968 45 H 0.029 0.971 46 H 0.219 0.781 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.981 -23.558 2.234 24.973 hybrid contribution 0.071 0.863 -0.060 0.868 sum 8.052 -22.694 2.173 24.178 Atomic orbital electron populations 1.21766 0.95719 1.01324 1.02272 1.21537 0.96171 0.96736 1.01624 1.21402 0.92747 0.96375 1.03997 1.21763 0.98101 0.94566 1.03561 1.20735 0.81914 0.91599 0.76467 1.90876 1.55385 1.44808 1.47786 1.48218 1.05452 1.07592 1.73607 1.21694 0.91350 0.89771 0.98687 1.21914 0.98733 0.97927 0.98729 1.21535 0.97858 0.94439 1.01944 1.22129 0.96635 0.99231 0.99119 1.21413 0.95708 0.80371 0.97639 0.91256 1.22219 0.95482 0.92566 1.04627 1.20807 0.91415 0.88951 0.96915 1.42353 1.03925 1.02919 1.88297 1.19209 0.92481 0.83420 1.41745 0.91408 1.24745 0.95246 0.97891 1.03334 1.69676 0.97245 1.33588 1.57663 0.86278 0.76542 0.85605 0.77833 1.21369 1.21720 1.21379 0.92543 0.92569 0.92968 0.92228 0.92196 0.91007 0.91060 0.89465 0.89402 0.89949 0.91534 0.91524 0.90996 0.91812 0.91867 0.91490 0.90141 0.89543 0.91075 0.96807 0.97137 0.78076 0.93584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 37.16 0.37 -0.91 16 2 C -0.12 -1.00 5.93 -26.73 -0.16 -1.16 16 3 C -0.11 -1.15 4.50 -26.73 -0.12 -1.27 16 4 C -0.14 -1.35 4.10 -27.89 -0.11 -1.47 16 5 C 0.50 7.08 7.61 -10.99 -0.08 6.99 16 6 O -0.51 -9.64 11.39 5.55 0.06 -9.57 16 7 N -0.61 -7.64 2.97 -164.97 -0.49 -8.13 16 8 C 0.11 0.89 6.32 -3.71 -0.02 0.87 16 9 C -0.13 -1.06 6.08 -26.62 -0.16 -1.22 16 10 C -0.12 -1.12 5.88 -26.69 -0.16 -1.28 16 11 C -0.13 -1.69 4.93 -26.38 -0.13 -1.82 16 12 C 0.15 2.21 3.01 -67.37 -0.20 2.00 16 13 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 14 C -0.11 -2.16 3.24 -26.73 -0.09 -2.25 16 15 C 0.15 3.30 5.82 -4.04 -0.02 3.28 16 16 N -0.73 -20.60 5.60 -59.91 -0.34 -20.93 16 17 C -0.24 -7.14 9.99 -15.06 -0.15 -7.29 16 18 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 19 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 20 N -0.93 -30.10 13.06 55.49 0.72 -29.37 16 21 Si 0.91 23.50 29.55 -169.99 -5.02 18.48 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 31 H 0.07 0.88 8.10 -51.93 -0.42 0.45 16 32 H 0.09 0.67 7.48 -51.93 -0.39 0.28 16 33 H 0.09 0.69 8.11 -51.93 -0.42 0.27 16 34 H 0.08 0.51 5.96 -51.93 -0.31 0.20 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.08 1.07 6.93 -51.93 -0.36 0.71 16 42 H 0.09 1.89 6.35 -51.93 -0.33 1.56 16 43 H 0.07 1.52 7.12 -51.93 -0.37 1.15 16 44 H 0.01 0.31 6.91 -51.93 -0.36 -0.05 16 45 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 46 H 0.39 11.63 7.67 -40.82 -0.31 11.31 16 47 H 0.25 7.89 8.31 -40.82 -0.34 7.55 16 LS Contribution 361.46 15.07 5.45 5.45 Total: -1.00 -34.71 361.46 -9.49 -44.19 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -8.73 Total: 6.00 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -1.14 Total: -6.11 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: -0.10 Total: -58.43 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.06 Total: -9.57 kcal Atomic # 14 Polarization: 23.50 SS G_CDS: -5.02 Total: 18.48 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.71 -9.49 -44.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753773194.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.416 kcal (2) G-P(sol) polarization free energy of solvation -34.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds