Wall clock time and date at job start Tue Mar 31 2020 05:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46932 * 2 1 4 4 C 1.53010 * 109.46709 * 179.97438 * 3 2 1 5 5 C 1.50695 * 109.46532 * 179.97438 * 4 3 2 6 6 O 1.21281 * 120.00670 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99450 * 180.02562 * 5 4 3 8 8 C 1.46922 * 120.63572 * 5.11579 * 7 5 4 9 9 C 1.53198 * 108.89441 * 126.46548 * 8 7 5 10 10 C 1.53042 * 109.30577 * 54.57115 * 9 8 7 11 11 C 1.53043 * 109.53967 * 298.63032 * 10 9 8 12 12 C 1.46969 * 120.65488 * 184.94349 * 7 5 4 13 13 H 1.08994 * 109.46898 * 113.74456 * 12 7 5 14 14 C 1.53000 * 109.70858 * 353.45930 * 12 7 5 15 15 C 1.53002 * 109.47177 * 178.99128 * 14 12 7 16 16 N 1.46499 * 109.47264 * 185.27502 * 15 14 12 17 17 C 1.36930 * 120.00171 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99766 * 0.02562 * 17 16 15 19 19 C 1.38817 * 120.00212 * 180.02562 * 17 16 15 20 20 N 1.31616 * 119.99900 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 119.99897 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.46994 * 90.00202 * 21 19 17 23 23 H 1.48497 * 109.46846 * 209.99956 * 21 19 17 24 24 H 1.48498 * 109.46801 * 330.00114 * 21 19 17 25 25 H 1.08992 * 109.47437 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47312 * 300.00122 * 1 2 3 27 27 H 1.08997 * 109.47480 * 59.99821 * 1 2 3 28 28 H 1.08999 * 109.47312 * 239.99878 * 2 1 3 29 29 H 1.08998 * 109.47046 * 119.99865 * 2 1 3 30 30 H 1.09003 * 109.47099 * 60.00318 * 3 2 1 31 31 H 1.08998 * 109.47145 * 299.99804 * 3 2 1 32 32 H 1.08998 * 109.46426 * 59.99944 * 4 3 2 33 33 H 1.09000 * 109.46967 * 300.00302 * 4 3 2 34 34 H 1.09004 * 109.58418 * 6.61051 * 8 7 5 35 35 H 1.08999 * 109.59308 * 246.33221 * 8 7 5 36 36 H 1.09000 * 109.49851 * 174.51730 * 9 8 7 37 37 H 1.08999 * 109.49919 * 294.62033 * 9 8 7 38 38 H 1.08992 * 109.46174 * 58.65827 * 10 9 8 39 39 H 1.09003 * 109.45356 * 178.62966 * 10 9 8 40 40 H 1.08998 * 109.49830 * 181.32179 * 11 10 9 41 41 H 1.09005 * 109.49840 * 301.41972 * 11 10 9 42 42 H 1.09005 * 109.47487 * 298.99389 * 14 12 7 43 43 H 1.09003 * 109.47509 * 58.99210 * 14 12 7 44 44 H 1.09003 * 109.47158 * 305.27809 * 15 14 12 45 45 H 1.09001 * 109.46561 * 65.27855 * 15 14 12 46 46 H 0.97001 * 119.99681 * 0.02562 * 16 15 14 47 47 H 0.96998 * 120.00131 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0723 2.8633 0.0000 6 8 3.2842 3.7852 -0.0013 7 7 5.3974 3.1096 -0.0001 8 6 6.3635 2.0084 -0.1123 9 6 7.3196 2.3035 -1.2724 10 6 7.9566 3.6796 -1.0655 11 6 6.8651 4.7524 -1.0542 12 6 5.9040 4.4849 0.1082 13 1 6.4324 4.6040 1.0541 14 6 4.7361 5.4714 0.0455 15 6 5.2670 6.8997 0.1839 16 7 4.1412 7.8348 0.2503 17 6 4.3736 9.1783 0.3767 18 1 5.3869 9.5486 0.4270 19 6 3.3069 10.0643 0.4402 20 7 3.5304 11.3557 0.5612 21 14 1.5543 9.4237 0.3539 22 1 1.0676 9.1273 1.7252 23 1 0.6820 10.4511 -0.2696 24 1 1.5202 8.1837 -0.4623 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9336 0.9285 -0.8891 33 1 3.9330 0.9288 0.8908 34 1 5.8334 1.0754 -0.3041 35 1 6.9296 1.9229 0.8152 36 1 8.0994 1.5426 -1.3037 37 1 6.7657 2.2964 -2.2112 38 1 8.4896 3.6938 -0.1149 39 1 8.6557 3.8817 -1.8770 40 1 7.3216 5.7344 -0.9303 41 1 6.3155 4.7222 -1.9951 42 1 4.2222 5.3658 -0.9100 43 1 4.0398 5.2623 0.8576 44 1 5.8604 6.9800 1.0947 45 1 5.8894 7.1410 -0.6778 46 1 3.2311 7.5021 0.2055 47 1 2.7851 11.9748 0.6059 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753773195.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:20 Heat of formation + Delta-G solvation = -37.083780 kcal Electronic energy + Delta-G solvation = -23097.258506 eV Core-core repulsion = 19893.816317 eV Total energy + Delta-G solvation = -3203.442188 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.60286 -37.64104 -35.71147 -35.16946 -33.12572 -32.76228 -31.00930 -30.36360 -28.11918 -25.71193 -24.41763 -23.88810 -22.08216 -21.31609 -20.96362 -20.54834 -18.88617 -17.52793 -16.58123 -16.18961 -16.02113 -15.14852 -14.69041 -14.61694 -14.29460 -14.12505 -13.90082 -13.71201 -13.50652 -13.30943 -12.97208 -12.67340 -12.59417 -12.46634 -12.21625 -11.62421 -11.52278 -11.36449 -11.33451 -11.16010 -11.12621 -11.00770 -10.84685 -10.79476 -10.72928 -10.41168 -10.27982 -10.02524 -9.48001 -8.82040 -8.76281 -8.49575 -7.08025 -5.66046 -2.99525 2.67280 2.92255 3.49632 3.55512 3.57068 4.32998 4.52477 4.63733 4.67595 4.71877 4.73835 4.76641 4.94377 4.99782 5.07207 5.14611 5.17015 5.23658 5.31565 5.43174 5.51689 5.57526 5.60730 5.61114 5.64107 5.70425 5.72450 5.77773 5.88804 5.93304 5.97247 6.05153 6.05783 6.14891 6.19463 6.20151 6.34314 6.48764 6.64205 7.00642 7.09853 7.43678 8.11958 8.27374 8.54274 9.35014 10.08408 10.30132 11.52702 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012390 B = 0.004826 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.282492 B = 5800.514946 C = 7906.343847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.107 4.107 4 C -0.140 4.140 5 C 0.507 3.493 6 O -0.519 6.519 7 N -0.613 5.613 8 C 0.108 3.892 9 C -0.135 4.135 10 C -0.120 4.120 11 C -0.134 4.134 12 C 0.152 3.848 13 H 0.071 0.929 14 C -0.116 4.116 15 C 0.151 3.849 16 N -0.755 5.755 17 C -0.240 4.240 18 H 0.089 0.911 19 C 0.002 3.998 20 N -0.938 5.938 21 Si 0.883 3.117 22 H -0.284 1.284 23 H -0.292 1.292 24 H -0.275 1.275 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.085 0.915 44 H 0.020 0.980 45 H 0.023 0.977 46 H 0.363 0.637 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.198 -28.542 -2.569 29.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.145 4.145 4 C -0.180 4.180 5 C 0.295 3.705 6 O -0.395 6.395 7 N -0.347 5.347 8 C -0.015 4.015 9 C -0.173 4.173 10 C -0.158 4.158 11 C -0.172 4.172 12 C 0.049 3.951 13 H 0.089 0.911 14 C -0.154 4.154 15 C 0.023 3.977 16 N -0.400 5.400 17 C -0.370 4.370 18 H 0.107 0.893 19 C -0.193 4.193 20 N -0.587 5.587 21 Si 0.714 3.286 22 H -0.211 1.211 23 H -0.218 1.218 24 H -0.201 1.201 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.101 0.899 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.104 0.896 44 H 0.038 0.962 45 H 0.041 0.959 46 H 0.195 0.805 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.888 -27.832 -2.546 28.372 hybrid contribution -1.060 -0.373 -0.087 1.127 sum 3.828 -28.205 -2.633 28.585 Atomic orbital electron populations 1.21763 0.95720 1.01394 1.02203 1.21537 0.96164 0.96684 1.01710 1.21402 0.92773 0.96441 1.03875 1.21767 0.98070 0.94505 1.03683 1.20729 0.81884 0.91592 0.76285 1.90840 1.55473 1.44951 1.48260 1.48226 1.05462 1.07586 1.73445 1.21708 0.91329 0.89677 0.98812 1.21920 0.98736 0.98011 0.98665 1.21534 0.97855 0.94326 1.02077 1.22063 0.96638 0.99457 0.99047 1.21303 0.95561 0.80268 0.97987 0.91079 1.22263 0.95791 0.92750 1.04553 1.20789 0.90886 0.88199 0.97804 1.42708 1.03259 1.03892 1.90186 1.19092 0.94903 0.81128 1.41843 0.89346 1.24650 0.97370 0.95121 1.02200 1.69708 1.30391 1.00849 1.57723 0.86539 0.86208 0.77928 0.77973 1.21112 1.21828 1.20060 0.92898 0.92581 0.92614 0.92168 0.92133 0.91085 0.91131 0.89371 0.89300 0.89926 0.91434 0.90903 0.91536 0.91780 0.91702 0.89901 0.91490 0.91071 0.89645 0.96202 0.95942 0.80463 0.93200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.16 0.37 -0.81 16 2 C -0.12 -0.93 5.93 -26.73 -0.16 -1.09 16 3 C -0.11 -1.06 4.50 -26.72 -0.12 -1.18 16 4 C -0.14 -1.25 4.10 -27.88 -0.11 -1.36 16 5 C 0.51 6.65 7.61 -10.99 -0.08 6.57 16 6 O -0.52 -9.15 11.41 5.56 0.06 -9.09 16 7 N -0.61 -7.14 2.98 -165.19 -0.49 -7.63 16 8 C 0.11 0.82 6.32 -3.71 -0.02 0.80 16 9 C -0.14 -0.99 6.08 -26.61 -0.16 -1.15 16 10 C -0.12 -1.06 5.88 -26.69 -0.16 -1.22 16 11 C -0.13 -1.61 4.90 -26.61 -0.13 -1.74 16 12 C 0.15 2.08 2.99 -67.58 -0.20 1.88 16 13 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 14 C -0.12 -2.11 3.25 -26.73 -0.09 -2.20 16 15 C 0.15 3.22 5.80 -4.04 -0.02 3.19 16 16 N -0.76 -19.98 5.41 -59.91 -0.32 -20.30 16 17 C -0.24 -7.28 10.47 -15.06 -0.16 -7.44 16 18 H 0.09 2.83 8.06 -52.49 -0.42 2.40 16 19 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 20 N -0.94 -30.85 13.97 55.49 0.78 -30.08 16 21 Si 0.88 23.85 27.74 -169.99 -4.71 19.14 16 22 H -0.28 -7.61 7.11 56.52 0.40 -7.21 16 23 H -0.29 -7.85 7.11 56.52 0.40 -7.44 16 24 H -0.27 -7.20 6.52 56.52 0.37 -6.83 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 31 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 32 H 0.09 0.62 7.48 -51.93 -0.39 0.23 16 33 H 0.09 0.63 8.11 -51.93 -0.42 0.21 16 34 H 0.08 0.46 5.96 -51.93 -0.31 0.15 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.08 1.05 6.90 -51.93 -0.36 0.70 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.07 1.42 7.12 -51.93 -0.37 1.05 16 43 H 0.09 1.73 6.37 -51.93 -0.33 1.40 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.02 0.48 6.89 -51.93 -0.36 0.12 16 46 H 0.36 9.63 5.53 -40.82 -0.23 9.40 16 47 H 0.26 8.06 8.31 -40.82 -0.34 7.72 16 LS Contribution 358.28 15.07 5.40 5.40 Total: -1.00 -35.27 358.28 -9.13 -44.40 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -8.69 Total: 3.94 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -1.15 Total: -5.79 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: -0.04 Total: -58.00 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.06 Total: -9.09 kcal Atomic # 14 Polarization: 23.85 SS G_CDS: -4.71 Total: 19.14 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.27 -9.13 -44.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753773195.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.319 kcal (2) G-P(sol) polarization free energy of solvation -35.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds