Wall clock time and date at job start Tue Mar 31 2020 05:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47131 * 2 1 4 4 C 1.53006 * 109.47127 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47184 * 179.97438 * 4 3 2 6 6 O 1.21282 * 120.00025 * 0.02562 * 5 4 3 7 7 N 1.34776 * 120.00035 * 179.97438 * 5 4 3 8 8 C 1.46928 * 120.62890 * 359.72639 * 7 5 4 9 9 C 1.52763 * 109.00345 * 233.58087 * 8 7 5 10 10 C 1.53034 * 109.38471 * 305.58568 * 9 8 7 11 11 C 1.53041 * 109.53949 * 61.24670 * 10 9 8 12 12 H 1.09001 * 109.49733 * 58.58022 * 11 10 9 13 13 C 1.52992 * 109.50278 * 178.68409 * 11 10 9 14 14 H 1.09001 * 109.47246 * 59.82924 * 13 11 10 15 15 C 1.52991 * 109.47399 * 179.83695 * 13 11 10 16 16 N 1.46501 * 109.46525 * 299.83596 * 13 11 10 17 17 C 1.36944 * 119.99918 * 155.00318 * 16 13 11 18 18 H 1.08004 * 119.99857 * 359.97438 * 17 16 13 19 19 C 1.38814 * 119.99988 * 179.97438 * 17 16 13 20 20 N 1.31609 * 120.00121 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99673 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47256 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47135 * 120.00206 * 21 19 17 24 24 H 1.48503 * 109.46789 * 239.99773 * 21 19 17 25 25 C 1.46921 * 120.63121 * 180.02562 * 7 5 4 26 26 H 1.08996 * 109.47134 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46997 * 299.99574 * 1 2 3 28 28 H 1.08992 * 109.47534 * 59.99520 * 1 2 3 29 29 H 1.09001 * 109.46993 * 239.99869 * 2 1 3 30 30 H 1.09004 * 109.47298 * 120.00283 * 2 1 3 31 31 H 1.09001 * 109.46832 * 60.00325 * 3 2 1 32 32 H 1.08993 * 109.47194 * 299.99846 * 3 2 1 33 33 H 1.09001 * 109.46801 * 300.00272 * 4 3 2 34 34 H 1.09001 * 109.46998 * 59.99868 * 4 3 2 35 35 H 1.08997 * 109.58650 * 353.41556 * 8 7 5 36 36 H 1.08997 * 109.58687 * 113.83964 * 8 7 5 37 37 H 1.09004 * 109.55971 * 185.55463 * 9 8 7 38 38 H 1.08998 * 109.36252 * 65.50539 * 9 8 7 39 39 H 1.08999 * 109.46079 * 301.22166 * 10 9 8 40 40 H 1.09004 * 109.45773 * 181.25964 * 10 9 8 41 41 H 1.09006 * 109.47314 * 179.97438 * 15 13 11 42 42 H 1.09002 * 109.47366 * 299.99818 * 15 13 11 43 43 H 1.09008 * 109.47637 * 59.99805 * 15 13 11 44 44 H 0.97000 * 120.00753 * 334.99769 * 16 13 11 45 45 H 0.97001 * 120.00096 * 179.97438 * 20 19 17 46 46 H 1.08995 * 109.58914 * 246.15961 * 25 7 5 47 47 H 1.09003 * 109.58495 * 6.58434 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0724 2.8633 -0.0013 6 8 3.2843 3.7851 -0.0008 7 7 5.3974 3.1095 -0.0014 8 6 6.3644 2.0033 0.0051 9 6 7.3364 2.1991 1.1673 10 6 7.9708 3.5884 1.0703 11 6 6.8796 4.6572 1.1659 12 1 6.3430 4.5460 2.1081 13 6 7.5180 6.0461 1.1018 14 1 8.0556 6.1557 0.1599 15 6 6.4263 7.1140 1.1933 16 7 8.4524 6.2059 2.2188 17 6 9.4928 7.0908 2.1198 18 1 9.6248 7.6705 1.2182 19 6 10.3779 7.2427 3.1784 20 7 10.2168 6.5366 4.2773 21 14 11.7975 8.4492 3.0431 22 1 11.7576 9.1137 1.7156 23 1 11.6813 9.4723 4.1131 24 1 13.0826 7.7202 3.1929 25 6 5.9024 4.4892 -0.0014 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8898 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6766 1.9562 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 3.9337 0.9284 0.8891 34 1 3.9330 0.9287 -0.8909 35 1 5.8367 1.0575 0.1273 36 1 6.9182 1.9965 -0.9336 37 1 8.1165 1.4391 1.1226 38 1 6.7955 2.1110 2.1095 39 1 8.4907 3.6844 0.1171 40 1 8.6813 3.7209 1.8863 41 1 6.8812 8.1035 1.1481 42 1 5.7311 6.9950 0.3622 43 1 5.8887 7.0043 2.1352 44 1 8.3341 5.6851 3.0285 45 1 10.8354 6.6424 5.0169 46 1 6.4177 4.6897 -0.9407 47 1 5.0700 5.1830 0.1164 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753790378.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:34 Heat of formation + Delta-G solvation = -57.029130 kcal Electronic energy + Delta-G solvation = -22922.340222 eV Core-core repulsion = 19718.033138 eV Total energy + Delta-G solvation = -3204.307084 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.24315 -37.92121 -35.55489 -35.43179 -32.80239 -32.00249 -30.95440 -29.74189 -27.95906 -25.90133 -24.26196 -24.08574 -22.69450 -21.40892 -20.78837 -19.55639 -18.77610 -17.27963 -16.91263 -16.15853 -15.88414 -14.95482 -14.77244 -14.25611 -14.14924 -13.92350 -13.72282 -13.48990 -13.33130 -13.22298 -12.72243 -12.59469 -12.50444 -12.24514 -12.10575 -11.55086 -11.47437 -11.33072 -11.21463 -11.09710 -10.89392 -10.80500 -10.79854 -10.70190 -10.43696 -10.14956 -10.10196 -9.86559 -9.64772 -9.54574 -8.88736 -8.51606 -6.93080 -5.75177 -3.02998 2.66758 3.03603 3.43527 3.49601 3.51468 4.39080 4.59887 4.63058 4.70770 4.80109 4.95133 5.03818 5.09175 5.13997 5.23852 5.26282 5.35075 5.42871 5.53491 5.56986 5.58040 5.63140 5.67647 5.68958 5.87926 5.89748 5.91278 5.97688 6.02492 6.04328 6.15437 6.17051 6.24708 6.28031 6.53007 6.54232 6.62066 6.72723 6.83931 6.96612 7.16140 7.46984 7.72508 8.22629 8.43620 9.54878 10.13174 10.48162 11.47674 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.036450 B = 0.003121 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.996685 B = 8970.741861 C = 9267.185842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.105 4.105 4 C -0.140 4.140 5 C 0.511 3.489 6 O -0.545 6.545 7 N -0.610 5.610 8 C 0.107 3.893 9 C -0.136 4.136 10 C -0.109 4.109 11 C -0.102 4.102 12 H 0.069 0.931 13 C 0.181 3.819 14 H 0.047 0.953 15 C -0.168 4.168 16 N -0.722 5.722 17 C -0.233 4.233 18 H 0.070 0.930 19 C -0.015 4.015 20 N -0.934 5.934 21 Si 0.904 3.096 22 H -0.281 1.281 23 H -0.293 1.293 24 H -0.292 1.292 25 C 0.116 3.884 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.083 0.917 41 H 0.052 0.948 42 H 0.038 0.962 43 H 0.045 0.955 44 H 0.383 0.617 45 H 0.254 0.746 46 H 0.064 0.936 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.144 -15.191 -10.025 22.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.143 4.143 4 C -0.180 4.180 5 C 0.300 3.700 6 O -0.423 6.423 7 N -0.343 5.343 8 C -0.016 4.016 9 C -0.174 4.174 10 C -0.147 4.147 11 C -0.123 4.123 12 H 0.087 0.913 13 C 0.070 3.930 14 H 0.065 0.935 15 C -0.228 4.228 16 N -0.363 5.363 17 C -0.364 4.364 18 H 0.088 0.912 19 C -0.211 4.211 20 N -0.582 5.582 21 Si 0.736 3.264 22 H -0.206 1.206 23 H -0.220 1.220 24 H -0.220 1.220 25 C -0.006 4.006 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.102 0.898 41 H 0.071 0.929 42 H 0.057 0.943 43 H 0.065 0.935 44 H 0.217 0.783 45 H 0.063 0.937 46 H 0.083 0.917 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.425 -14.573 -10.090 22.235 hybrid contribution 0.967 0.511 0.371 1.155 sum -12.457 -14.062 -9.719 21.151 Atomic orbital electron populations 1.21759 0.95762 1.01436 1.02052 1.21549 0.96101 0.96688 1.01907 1.21384 0.92848 0.96457 1.03634 1.21724 0.97938 0.94258 1.04039 1.20711 0.81792 0.91677 0.75865 1.90685 1.54811 1.46619 1.50173 1.48202 1.05410 1.07807 1.72896 1.21698 0.91210 0.89250 0.99450 1.21884 0.98443 0.98986 0.98129 1.21496 0.97863 0.92085 1.03264 1.21742 0.95726 0.96815 0.97969 0.91278 1.20154 0.90065 0.90081 0.92677 0.93524 1.22511 0.99152 1.01193 0.99931 1.42406 1.29802 1.48952 1.15124 1.19276 1.02694 1.14731 0.99700 0.91219 1.24715 0.99632 1.00315 0.96440 1.69664 1.39123 1.44004 1.05459 0.86153 0.82491 0.80626 0.77156 1.20615 1.21975 1.21975 1.21754 0.98274 0.82079 0.98498 0.92858 0.92633 0.92692 0.92074 0.91994 0.91187 0.91284 0.89006 0.89159 0.90164 0.91408 0.90897 0.91711 0.92271 0.89841 0.92859 0.94277 0.93534 0.78319 0.93655 0.91732 0.88830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.68 16 2 C -0.12 -0.89 5.93 -26.73 -0.16 -1.05 16 3 C -0.11 -0.98 4.50 -26.73 -0.12 -1.10 16 4 C -0.14 -1.28 4.05 -27.88 -0.11 -1.39 16 5 C 0.51 6.86 7.70 -10.99 -0.08 6.77 16 6 O -0.55 -9.41 15.39 5.56 0.09 -9.33 16 7 N -0.61 -7.85 2.98 -173.06 -0.52 -8.37 16 8 C 0.11 1.07 6.31 -3.93 -0.02 1.04 16 9 C -0.14 -1.59 6.06 -26.83 -0.16 -1.75 16 10 C -0.11 -1.68 5.03 -26.69 -0.13 -1.81 16 11 C -0.10 -1.68 1.97 -90.52 -0.18 -1.86 16 12 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 13 C 0.18 3.55 2.47 -67.94 -0.17 3.38 16 14 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 15 C -0.17 -3.16 9.14 37.15 0.34 -2.82 16 16 N -0.72 -17.68 4.41 -53.43 -0.24 -17.91 16 17 C -0.23 -6.37 9.93 -15.06 -0.15 -6.52 16 18 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 19 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 20 N -0.93 -27.98 13.06 55.49 0.72 -27.26 16 21 Si 0.90 22.37 29.55 -169.99 -5.02 17.34 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 C 0.12 1.71 5.19 -3.73 -0.02 1.69 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 32 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 33 H 0.09 0.72 7.68 -51.93 -0.40 0.32 16 34 H 0.09 0.65 7.95 -51.93 -0.41 0.24 16 35 H 0.08 0.60 5.93 -51.93 -0.31 0.29 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.08 1.54 7.42 -51.93 -0.39 1.16 16 41 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.04 0.64 6.56 -51.93 -0.34 0.30 16 43 H 0.05 0.90 8.14 -51.92 -0.42 0.48 16 44 H 0.38 10.04 7.59 -40.82 -0.31 9.73 16 45 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.09 1.53 5.62 -51.93 -0.29 1.24 16 LS Contribution 365.45 15.07 5.51 5.51 Total: -1.00 -31.42 365.45 -8.91 -40.33 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -8.75 Total: 6.32 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -0.70 Total: -6.63 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: -0.03 Total: -53.54 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.09 Total: -9.33 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.42 -8.91 -40.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753790378.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.697 kcal (2) G-P(sol) polarization free energy of solvation -31.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds