Wall clock time and date at job start Tue Mar 31 2020 05:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 C 1.50706 * 109.46735 * 180.02562 * 4 3 2 6 6 O 1.21273 * 120.00140 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99767 * 180.02562 * 5 4 3 8 8 C 1.46926 * 120.62912 * 359.97438 * 7 5 4 9 9 C 1.53194 * 108.77794 * 126.37212 * 8 7 5 10 10 C 1.53037 * 109.31156 * 54.62806 * 9 8 7 11 11 C 1.53034 * 109.54078 * 298.63864 * 10 9 8 12 12 H 1.08996 * 109.49981 * 301.41068 * 11 10 9 13 13 C 1.53009 * 109.49773 * 181.35076 * 11 10 9 14 14 H 1.09004 * 109.46745 * 185.00449 * 13 11 10 15 15 C 1.53003 * 109.46687 * 304.99755 * 13 11 10 16 16 N 1.46496 * 109.47188 * 64.99683 * 13 11 10 17 17 C 1.36942 * 119.99508 * 154.99921 * 16 13 11 18 18 H 1.07992 * 120.00375 * 0.02562 * 17 16 13 19 19 C 1.38814 * 119.99628 * 180.02562 * 17 16 13 20 20 N 1.31620 * 119.99702 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00131 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46899 * 59.99883 * 21 19 17 23 23 H 1.48494 * 109.47502 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47216 * 300.00335 * 21 19 17 25 25 C 1.46924 * 120.62834 * 179.71756 * 7 5 4 26 26 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 27 27 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 28 28 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 30 30 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 31 31 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 32 32 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 33 33 H 1.09001 * 109.47194 * 299.99650 * 4 3 2 34 34 H 1.08992 * 109.47399 * 59.99823 * 4 3 2 35 35 H 1.09005 * 109.58400 * 246.15866 * 8 7 5 36 36 H 1.09004 * 109.59005 * 6.58108 * 8 7 5 37 37 H 1.08996 * 109.49957 * 174.58787 * 9 8 7 38 38 H 1.09005 * 109.49246 * 294.64689 * 9 8 7 39 39 H 1.09007 * 109.46152 * 58.66127 * 10 9 8 40 40 H 1.09002 * 109.46162 * 178.61560 * 10 9 8 41 41 H 1.09002 * 109.46721 * 180.02562 * 15 13 11 42 42 H 1.09001 * 109.47312 * 299.99762 * 15 13 11 43 43 H 1.08997 * 109.47119 * 60.00179 * 15 13 11 44 44 H 0.96996 * 119.99736 * 335.00691 * 16 13 11 45 45 H 0.97007 * 119.99972 * 179.97438 * 20 19 17 46 46 H 1.08991 * 109.58859 * 353.41682 * 25 7 5 47 47 H 1.09000 * 109.58813 * 113.84693 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 6 4.0724 2.8632 0.0000 6 8 3.2843 3.7850 0.0004 7 7 5.3975 3.1094 -0.0009 8 6 6.3644 2.0032 -0.0020 9 6 7.3357 2.1983 -1.1705 10 6 7.9701 3.5876 -1.0747 11 6 6.8789 4.6563 -1.1700 12 1 6.3416 4.5448 -2.1118 13 6 7.5176 6.0454 -1.1079 14 1 6.7354 6.8042 -1.0862 15 6 8.3722 6.1576 0.1562 16 7 8.3619 6.2477 -2.2878 17 6 8.6217 7.5160 -2.7344 18 1 8.2045 8.3669 -2.2166 19 6 9.4214 7.7078 -3.8527 20 7 9.9295 6.6706 -4.4841 21 14 9.7752 9.4376 -4.4624 22 1 10.4612 10.2082 -3.3944 23 1 10.6476 9.3708 -5.6622 24 1 8.4984 10.1091 -4.8149 25 6 5.9024 4.4891 -0.0066 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9284 0.8891 34 1 3.9329 0.9286 -0.8908 35 1 6.9181 2.0010 0.9369 36 1 5.8367 1.0566 -0.1196 37 1 8.1156 1.4382 -1.1261 38 1 6.7941 2.1092 -2.1124 39 1 8.4908 3.6842 -0.1219 40 1 8.6801 3.7198 -1.8912 41 1 8.8268 7.1473 0.2007 42 1 7.7439 6.0070 1.0341 43 1 9.1543 5.3987 0.1346 44 1 8.7369 5.4835 -2.7527 45 1 10.4880 6.8046 -5.2658 46 1 5.0701 5.1824 -0.1272 47 1 6.4179 4.6935 0.9319 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753790379.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:39 Heat of formation + Delta-G solvation = -54.244968 kcal Electronic energy + Delta-G solvation = -22931.666175 eV Core-core repulsion = 19727.479822 eV Total energy + Delta-G solvation = -3204.186353 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.27053 -38.04845 -35.56566 -35.40953 -32.86375 -31.85849 -30.96878 -29.73781 -27.79340 -25.88409 -24.62701 -24.06580 -22.65511 -21.69545 -21.15348 -19.00025 -18.56716 -17.31357 -16.89573 -16.15422 -15.88693 -14.92326 -14.75934 -14.35746 -14.17316 -14.06484 -13.84737 -13.71520 -13.33636 -13.05548 -12.78903 -12.58868 -12.43996 -12.35917 -12.08791 -11.55129 -11.43978 -11.35472 -11.20651 -11.11969 -10.88061 -10.80849 -10.79906 -10.63431 -10.49305 -10.24359 -10.07498 -9.82982 -9.63396 -9.53690 -8.87719 -8.49846 -6.93162 -5.74337 -3.02221 2.67064 3.03212 3.45906 3.50250 3.51158 4.39069 4.61082 4.63199 4.71171 4.78861 4.94618 5.00472 5.07736 5.11051 5.24174 5.26547 5.33288 5.43246 5.52511 5.58310 5.58856 5.60659 5.66322 5.69258 5.81841 5.89232 5.90615 5.92233 6.03472 6.05204 6.07061 6.16768 6.22125 6.26303 6.42943 6.51936 6.58277 6.72102 6.77283 6.94607 7.16622 7.46676 7.72882 8.22920 8.45037 9.56021 10.14244 10.49092 11.48543 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027659 B = 0.003182 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.083260 B = 8797.949267 C = 9023.864879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.106 4.106 4 C -0.139 4.139 5 C 0.511 3.489 6 O -0.545 6.545 7 N -0.610 5.610 8 C 0.107 3.893 9 C -0.136 4.136 10 C -0.114 4.114 11 C -0.103 4.103 12 H 0.073 0.927 13 C 0.179 3.821 14 H 0.047 0.953 15 C -0.168 4.168 16 N -0.723 5.723 17 C -0.236 4.236 18 H 0.069 0.931 19 C -0.015 4.015 20 N -0.935 5.935 21 Si 0.906 3.094 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.286 1.286 25 C 0.116 3.884 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.051 0.949 42 H 0.036 0.964 43 H 0.050 0.950 44 H 0.383 0.617 45 H 0.255 0.745 46 H 0.089 0.911 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.211 -16.136 11.372 22.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.143 4.143 4 C -0.179 4.179 5 C 0.299 3.701 6 O -0.422 6.422 7 N -0.343 5.343 8 C -0.016 4.016 9 C -0.174 4.174 10 C -0.152 4.152 11 C -0.123 4.123 12 H 0.091 0.909 13 C 0.069 3.931 14 H 0.065 0.935 15 C -0.228 4.228 16 N -0.365 5.365 17 C -0.367 4.367 18 H 0.087 0.913 19 C -0.211 4.211 20 N -0.584 5.584 21 Si 0.737 3.263 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.213 1.213 25 C -0.007 4.007 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.070 0.930 42 H 0.055 0.945 43 H 0.069 0.931 44 H 0.218 0.782 45 H 0.065 0.935 46 H 0.108 0.892 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.619 -15.458 11.324 22.410 hybrid contribution 0.627 0.672 -0.596 1.095 sum -10.992 -14.786 10.728 21.320 Atomic orbital electron populations 1.21760 0.95760 1.01434 1.02062 1.21546 0.96107 0.96683 1.01896 1.21386 0.92846 0.96462 1.03654 1.21722 0.97952 0.94244 1.04021 1.20718 0.81803 0.91680 0.75869 1.90687 1.54808 1.46622 1.50091 1.48192 1.05401 1.07772 1.72960 1.21775 0.91184 0.89304 0.99294 1.21950 0.98517 0.98715 0.98242 1.21599 0.98024 0.92645 1.02913 1.21695 0.95752 0.96719 0.98159 0.90901 1.20123 0.92364 0.92552 0.88059 0.93489 1.22563 1.00361 1.01840 0.98027 1.42426 1.58136 1.05968 1.29920 1.19214 1.24548 0.84987 1.07941 0.91279 1.24718 1.00743 0.97095 0.98505 1.69648 1.38409 1.28253 1.22080 0.86278 0.77732 0.84247 0.78009 1.21340 1.21759 1.21312 1.21687 0.98042 0.82119 0.98813 0.92691 0.92622 0.92859 0.91995 0.92083 0.91275 0.91175 0.89171 0.89000 0.91378 0.90110 0.90911 0.91578 0.91634 0.90616 0.92953 0.94469 0.93086 0.78204 0.93550 0.89238 0.91288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.15 0.37 -0.70 16 2 C -0.12 -0.90 5.93 -26.74 -0.16 -1.05 16 3 C -0.11 -1.00 4.50 -26.73 -0.12 -1.12 16 4 C -0.14 -1.28 4.05 -27.88 -0.11 -1.39 16 5 C 0.51 6.90 7.70 -10.98 -0.08 6.82 16 6 O -0.54 -9.52 15.39 5.56 0.09 -9.44 16 7 N -0.61 -7.82 2.98 -173.00 -0.52 -8.34 16 8 C 0.11 1.05 6.34 -3.71 -0.02 1.02 16 9 C -0.14 -1.53 6.08 -26.61 -0.16 -1.69 16 10 C -0.11 -1.66 4.52 -26.69 -0.12 -1.79 16 11 C -0.10 -1.70 2.26 -90.70 -0.20 -1.91 16 12 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 13 C 0.18 3.55 2.67 -67.93 -0.18 3.36 16 14 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 15 C -0.17 -2.97 8.76 37.16 0.33 -2.65 16 16 N -0.72 -17.94 5.06 -53.42 -0.27 -18.21 16 17 C -0.24 -6.57 9.93 -15.06 -0.15 -6.72 16 18 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 19 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 20 N -0.94 -28.24 13.06 55.49 0.72 -27.51 16 21 Si 0.91 22.62 29.55 -169.99 -5.02 17.60 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 C 0.12 1.71 5.57 -3.91 -0.02 1.68 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 32 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 33 H 0.09 0.64 7.94 -51.93 -0.41 0.23 16 34 H 0.09 0.72 7.69 -51.93 -0.40 0.32 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.58 5.93 -51.93 -0.31 0.28 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.91 6.43 -51.92 -0.33 0.58 16 40 H 0.08 1.30 6.74 -51.93 -0.35 0.95 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.04 0.55 6.46 -51.93 -0.34 0.22 16 43 H 0.05 0.89 6.38 -51.93 -0.33 0.56 16 44 H 0.38 10.00 6.36 -40.82 -0.26 9.74 16 45 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 46 H 0.09 1.49 7.01 -51.93 -0.36 1.12 16 47 H 0.07 0.95 6.33 -51.93 -0.33 0.62 16 LS Contribution 360.20 15.07 5.43 5.43 Total: -1.00 -32.03 360.20 -8.77 -40.80 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -8.46 Total: 6.33 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -0.74 Total: -6.66 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: -0.06 Total: -54.06 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.09 Total: -9.44 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.03 -8.77 -40.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753790379.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.446 kcal (2) G-P(sol) polarization free energy of solvation -32.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds