Wall clock time and date at job start Tue Mar 31 2020 05:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47131 * 2 1 4 4 C 1.53006 * 109.47127 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47184 * 179.97438 * 4 3 2 6 6 O 1.21282 * 120.00025 * 0.02562 * 5 4 3 7 7 N 1.34776 * 120.00035 * 179.97438 * 5 4 3 8 8 C 1.46928 * 120.62890 * 359.72639 * 7 5 4 9 9 C 1.52763 * 109.00345 * 233.58087 * 8 7 5 10 10 C 1.53034 * 109.38471 * 305.58568 * 9 8 7 11 11 C 1.53041 * 109.53949 * 61.24670 * 10 9 8 12 12 H 1.09001 * 109.49733 * 58.58022 * 11 10 9 13 13 C 1.52993 * 109.52916 * 178.66530 * 11 10 9 14 14 H 1.08999 * 109.47175 * 179.84835 * 13 11 10 15 15 C 1.53006 * 109.46957 * 59.85255 * 13 11 10 16 16 N 1.46498 * 109.47124 * 299.85330 * 13 11 10 17 17 C 1.36930 * 120.00346 * 204.99508 * 16 13 11 18 18 H 1.08010 * 119.99863 * 0.02562 * 17 16 13 19 19 C 1.38811 * 120.00499 * 179.97438 * 17 16 13 20 20 N 1.31619 * 120.00105 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00107 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47344 * 59.99755 * 21 19 17 23 23 H 1.48503 * 109.46947 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46927 * 299.99533 * 21 19 17 25 25 C 1.46921 * 120.63121 * 180.02562 * 7 5 4 26 26 H 1.08992 * 109.47534 * 59.99520 * 1 2 3 27 27 H 1.08996 * 109.47134 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46997 * 299.99574 * 1 2 3 29 29 H 1.09001 * 109.46993 * 239.99869 * 2 1 3 30 30 H 1.09004 * 109.47298 * 120.00283 * 2 1 3 31 31 H 1.09001 * 109.46832 * 60.00325 * 3 2 1 32 32 H 1.08993 * 109.47194 * 299.99846 * 3 2 1 33 33 H 1.09001 * 109.46801 * 300.00272 * 4 3 2 34 34 H 1.09001 * 109.46998 * 59.99868 * 4 3 2 35 35 H 1.08997 * 109.58650 * 353.41556 * 8 7 5 36 36 H 1.08997 * 109.58687 * 113.83964 * 8 7 5 37 37 H 1.09004 * 109.55971 * 185.55463 * 9 8 7 38 38 H 1.08998 * 109.36252 * 65.50539 * 9 8 7 39 39 H 1.08999 * 109.46079 * 301.22166 * 10 9 8 40 40 H 1.09003 * 109.44652 * 181.25595 * 10 9 8 41 41 H 1.08999 * 109.46836 * 299.99788 * 15 13 11 42 42 H 1.08996 * 109.47362 * 60.00317 * 15 13 11 43 43 H 1.08998 * 109.46965 * 180.02562 * 15 13 11 44 44 H 0.97002 * 119.99665 * 24.99945 * 16 13 11 45 45 H 0.97001 * 120.00469 * 180.02562 * 20 19 17 46 46 H 1.08995 * 109.58914 * 246.15961 * 25 7 5 47 47 H 1.09001 * 109.58837 * 6.43848 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0724 2.8633 -0.0013 6 8 3.2843 3.7851 -0.0008 7 7 5.3974 3.1095 -0.0014 8 6 6.3644 2.0033 0.0051 9 6 7.3364 2.1991 1.1673 10 6 7.9708 3.5884 1.0703 11 6 6.8796 4.6572 1.1659 12 1 6.3430 4.5460 2.1081 13 6 7.5174 6.0464 1.1023 14 1 6.7393 6.8068 1.1677 15 6 8.2718 6.2012 -0.2199 16 7 8.4518 6.2063 2.2192 17 6 8.7511 7.4577 2.6878 18 1 8.2979 8.3268 2.2341 19 6 9.6360 7.6092 3.7465 20 7 10.1879 6.5501 4.2997 21 14 10.0436 9.3163 4.3861 22 1 8.8011 9.9773 4.8597 23 1 11.0054 9.2064 5.5122 24 1 10.6482 10.1223 3.2951 25 6 5.9024 4.4892 -0.0014 26 1 -0.3634 0.5139 -0.8898 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6766 1.9562 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 3.9337 0.9284 0.8891 34 1 3.9330 0.9287 -0.8909 35 1 5.8367 1.0575 0.1273 36 1 6.9182 1.9965 -0.9336 37 1 8.1165 1.4391 1.1226 38 1 6.7955 2.1110 2.1095 39 1 8.4907 3.6844 0.1171 40 1 8.6812 3.7207 1.8864 41 1 9.0500 5.4407 -0.2853 42 1 7.5767 6.0822 -1.0509 43 1 8.7266 7.1907 -0.2650 44 1 8.8585 5.4257 2.6268 45 1 10.8059 6.6559 5.0397 46 1 6.4177 4.6897 -0.9407 47 1 5.0697 5.1831 0.1138 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753790380.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:43 Heat of formation + Delta-G solvation = -53.553339 kcal Electronic energy + Delta-G solvation = -22938.958585 eV Core-core repulsion = 19734.802223 eV Total energy + Delta-G solvation = -3204.156362 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.27169 -38.04829 -35.56758 -35.41560 -32.84547 -31.89435 -30.96341 -29.72898 -27.79375 -25.90208 -24.58092 -24.09033 -22.65094 -21.69862 -21.16657 -19.00827 -18.54176 -17.32688 -16.89067 -16.15638 -15.88978 -14.92804 -14.73917 -14.39314 -14.17399 -14.05968 -13.84292 -13.72859 -13.34235 -13.03339 -12.77662 -12.58797 -12.43979 -12.38916 -12.06741 -11.55284 -11.44105 -11.34110 -11.20591 -11.11045 -10.87860 -10.81131 -10.80073 -10.64220 -10.48855 -10.24834 -10.06947 -9.83356 -9.62328 -9.54011 -8.87704 -8.49259 -6.93352 -5.74553 -3.02389 2.66885 3.03348 3.45768 3.50110 3.51006 4.39010 4.60978 4.63059 4.70991 4.79073 4.94565 5.01469 5.07954 5.11699 5.24039 5.26507 5.33783 5.43463 5.52583 5.58108 5.58844 5.60456 5.66447 5.69091 5.81835 5.89374 5.91296 5.92178 6.03298 6.04790 6.07404 6.16589 6.22361 6.27126 6.42637 6.52661 6.58104 6.73240 6.78034 6.94004 7.16973 7.46762 7.72684 8.22790 8.44929 9.55897 10.14136 10.48940 11.48364 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028950 B = 0.003154 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.962836 B = 8875.627510 C = 9048.738973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.105 4.105 4 C -0.140 4.140 5 C 0.511 3.489 6 O -0.545 6.545 7 N -0.610 5.610 8 C 0.108 3.892 9 C -0.136 4.136 10 C -0.114 4.114 11 C -0.102 4.102 12 H 0.072 0.928 13 C 0.179 3.821 14 H 0.047 0.953 15 C -0.168 4.168 16 N -0.723 5.723 17 C -0.236 4.236 18 H 0.069 0.931 19 C -0.015 4.015 20 N -0.935 5.935 21 Si 0.906 3.094 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.287 1.287 25 C 0.115 3.885 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.049 0.951 42 H 0.037 0.963 43 H 0.052 0.948 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.070 0.930 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.909 -15.810 -10.954 22.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.143 4.143 4 C -0.179 4.179 5 C 0.299 3.701 6 O -0.423 6.423 7 N -0.343 5.343 8 C -0.015 4.015 9 C -0.174 4.174 10 C -0.152 4.152 11 C -0.122 4.122 12 H 0.090 0.910 13 C 0.069 3.931 14 H 0.065 0.935 15 C -0.228 4.228 16 N -0.365 5.365 17 C -0.367 4.367 18 H 0.087 0.913 19 C -0.211 4.211 20 N -0.584 5.584 21 Si 0.737 3.263 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.213 1.213 25 C -0.008 4.008 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.068 0.932 42 H 0.056 0.944 43 H 0.071 0.929 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.088 0.912 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.310 -15.136 -10.901 22.348 hybrid contribution 0.670 0.655 0.587 1.105 sum -11.640 -14.481 -10.313 21.250 Atomic orbital electron populations 1.21759 0.95761 1.01435 1.02058 1.21549 0.96105 0.96684 1.01900 1.21386 0.92849 0.96460 1.03646 1.21723 0.97948 0.94251 1.04027 1.20717 0.81807 0.91679 0.75868 1.90688 1.54809 1.46625 1.50138 1.48197 1.05393 1.07794 1.72926 1.21684 0.91193 0.89294 0.99363 1.21874 0.98509 0.98760 0.98288 1.21581 0.98034 0.92607 1.02964 1.21742 0.95729 0.96742 0.98023 0.90980 1.20120 0.91877 0.92660 0.88471 0.93480 1.22566 1.00227 1.01862 0.98177 1.42455 1.51416 1.06272 1.36346 1.19217 1.20607 0.85366 1.11506 0.91285 1.24716 1.00210 0.97031 0.99097 1.69642 1.34288 1.27493 1.26990 0.86280 0.77749 0.84034 0.78212 1.21321 1.21758 1.21332 1.21794 0.98020 0.82089 0.98867 0.92691 0.92858 0.92627 0.92079 0.91995 0.91177 0.91282 0.89005 0.89162 0.90123 0.91402 0.90852 0.91615 0.91687 0.90487 0.93168 0.94380 0.92932 0.78142 0.93545 0.91153 0.89258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.69 16 2 C -0.12 -0.89 5.93 -26.73 -0.16 -1.05 16 3 C -0.11 -0.99 4.50 -26.73 -0.12 -1.11 16 4 C -0.14 -1.28 4.05 -27.88 -0.11 -1.39 16 5 C 0.51 6.89 7.70 -10.99 -0.08 6.80 16 6 O -0.55 -9.50 15.39 5.56 0.09 -9.41 16 7 N -0.61 -7.82 2.98 -173.06 -0.52 -8.34 16 8 C 0.11 1.05 6.31 -3.93 -0.02 1.03 16 9 C -0.14 -1.55 6.06 -26.83 -0.16 -1.71 16 10 C -0.11 -1.69 4.63 -26.69 -0.12 -1.81 16 11 C -0.10 -1.69 2.33 -90.52 -0.21 -1.90 16 12 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 13 C 0.18 3.54 2.72 -67.93 -0.18 3.36 16 14 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 15 C -0.17 -2.99 8.79 37.16 0.33 -2.66 16 16 N -0.72 -17.91 5.04 -53.43 -0.27 -18.18 16 17 C -0.24 -6.56 9.93 -15.06 -0.15 -6.71 16 18 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 19 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 20 N -0.94 -28.20 13.06 55.49 0.72 -27.47 16 21 Si 0.91 22.60 29.55 -169.99 -5.02 17.57 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 C 0.11 1.69 5.50 -3.73 -0.02 1.67 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 32 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 33 H 0.09 0.72 7.68 -51.93 -0.40 0.32 16 34 H 0.09 0.64 7.95 -51.93 -0.41 0.23 16 35 H 0.08 0.59 5.93 -51.93 -0.31 0.28 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.92 6.50 -51.93 -0.34 0.58 16 40 H 0.08 1.34 6.47 -51.93 -0.34 1.01 16 41 H 0.05 0.87 6.46 -51.93 -0.34 0.54 16 42 H 0.04 0.57 6.32 -51.93 -0.33 0.24 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.38 9.96 6.06 -40.82 -0.25 9.71 16 45 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 46 H 0.07 0.97 6.18 -51.93 -0.32 0.65 16 47 H 0.09 1.47 7.00 -51.93 -0.36 1.11 16 LS Contribution 359.62 15.07 5.42 5.42 Total: -1.00 -31.98 359.62 -8.76 -40.73 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -8.42 Total: 6.39 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -0.75 Total: -6.71 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -0.06 Total: -53.99 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.09 Total: -9.41 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.98 -8.76 -40.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753790380.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.822 kcal (2) G-P(sol) polarization free energy of solvation -31.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds