Wall clock time and date at job start Tue Mar 31 2020 05:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 C 1.50706 * 109.46735 * 180.02562 * 4 3 2 6 6 O 1.21273 * 120.00140 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99767 * 180.02562 * 5 4 3 8 8 C 1.46927 * 120.62906 * 359.71711 * 7 5 4 9 9 C 1.53625 * 108.54281 * 126.37068 * 8 7 5 10 10 C 1.53039 * 109.24187 * 54.85513 * 9 8 7 11 11 C 1.53041 * 109.53894 * 298.50866 * 10 9 8 12 12 H 1.09002 * 109.52492 * 301.40352 * 11 10 9 13 13 C 1.52998 * 109.49998 * 181.31823 * 11 10 9 14 14 H 1.09006 * 109.47102 * 300.16098 * 13 11 10 15 15 C 1.53000 * 109.47135 * 180.16494 * 13 11 10 16 16 N 1.46496 * 109.47010 * 60.15978 * 13 11 10 17 17 C 1.36939 * 120.00083 * 204.99609 * 16 13 11 18 18 H 1.07999 * 119.99532 * 0.02562 * 17 16 13 19 19 C 1.38810 * 120.00089 * 180.02562 * 17 16 13 20 20 N 1.31618 * 120.00135 * 180.02562 * 19 17 16 21 21 Si 1.86805 * 119.99874 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47010 * 89.99622 * 21 19 17 23 23 H 1.48496 * 109.46885 * 209.99471 * 21 19 17 24 24 H 1.48496 * 109.47023 * 329.99321 * 21 19 17 25 25 C 1.46923 * 120.62868 * 179.97438 * 7 5 4 26 26 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 27 27 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 29 29 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 30 30 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 31 31 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 32 32 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 33 33 H 1.09001 * 109.47194 * 299.99650 * 4 3 2 34 34 H 1.08992 * 109.47399 * 59.99823 * 4 3 2 35 35 H 1.09005 * 109.58384 * 246.20558 * 8 7 5 36 36 H 1.09001 * 109.59276 * 6.62647 * 8 7 5 37 37 H 1.08997 * 109.63215 * 294.86392 * 9 8 7 38 38 H 1.09000 * 109.42872 * 174.72328 * 9 8 7 39 39 H 1.08993 * 109.45917 * 178.48973 * 10 9 8 40 40 H 1.08998 * 109.45125 * 58.52277 * 10 9 8 41 41 H 1.09000 * 109.47196 * 299.99951 * 15 13 11 42 42 H 1.09001 * 109.47092 * 60.00103 * 15 13 11 43 43 H 1.08998 * 109.47152 * 179.97438 * 15 13 11 44 44 H 0.97003 * 119.99949 * 25.00760 * 16 13 11 45 45 H 0.96999 * 119.99957 * 180.02562 * 20 19 17 46 46 H 1.08995 * 109.58853 * 353.36672 * 25 7 5 47 47 H 1.09005 * 109.58742 * 113.65661 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 6 4.0724 2.8632 0.0000 6 8 3.2843 3.7850 0.0004 7 7 5.3975 3.1094 -0.0009 8 6 6.3644 2.0032 0.0037 9 6 7.3363 2.1989 -1.1699 10 6 7.9708 3.5882 -1.0729 11 6 6.8796 4.6570 -1.1683 12 1 6.3427 4.5465 -2.1105 13 6 7.5181 6.0459 -1.1043 14 1 8.0557 6.1556 -0.1624 15 6 6.4263 7.1139 -1.1956 16 7 8.4524 6.2058 -2.2213 17 6 9.4928 7.0906 -2.1225 18 1 9.6248 7.6703 -1.2208 19 6 10.3778 7.2425 -3.1811 20 7 11.3781 8.0926 -3.0859 21 14 10.1489 6.2403 -4.7409 22 1 9.2791 6.9863 -5.6853 23 1 11.4711 5.9978 -5.3718 24 1 9.5147 4.9402 -4.4053 25 6 5.9025 4.4891 -0.0009 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9284 0.8891 34 1 3.9329 0.9286 -0.8908 35 1 6.9168 2.0046 0.9434 36 1 5.8369 1.0562 -0.1110 37 1 6.7953 2.1110 -2.1120 38 1 8.1163 1.4388 -1.1253 39 1 8.6812 3.7207 -1.8889 40 1 8.4906 3.6841 -0.1197 41 1 5.8887 7.0042 -2.1374 42 1 5.7313 6.9949 -0.3644 43 1 6.8812 8.1034 -1.1496 44 1 8.3339 5.6850 -3.0311 45 1 11.9962 8.1989 -3.8258 46 1 5.0701 5.1829 -0.1187 47 1 6.4157 4.6904 0.9394 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753790381.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:47 Heat of formation + Delta-G solvation = -52.792617 kcal Electronic energy + Delta-G solvation = -23007.395497 eV Core-core repulsion = 19803.272122 eV Total energy + Delta-G solvation = -3204.123375 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.31988 -38.03405 -35.66303 -35.53179 -32.83943 -32.06111 -31.07228 -30.10570 -28.28448 -25.99223 -24.32697 -24.07798 -22.50350 -21.46705 -20.81682 -19.78922 -18.85676 -17.64299 -17.03522 -16.22379 -15.98319 -15.06830 -14.76692 -14.35553 -14.16795 -14.10836 -13.84539 -13.57441 -13.46955 -13.05869 -12.75196 -12.67788 -12.58039 -12.40049 -12.35164 -11.61077 -11.59746 -11.45101 -11.28927 -11.25482 -10.99624 -10.92593 -10.85256 -10.80171 -10.53848 -10.23088 -10.19954 -9.92801 -9.67257 -9.56240 -8.91695 -8.60407 -7.25248 -5.75928 -3.10737 2.59879 2.95603 3.36267 3.40124 3.45120 4.32467 4.57193 4.59430 4.65793 4.71028 4.88358 4.93229 5.01090 5.02475 5.07329 5.19796 5.26880 5.31145 5.45750 5.51902 5.53360 5.55485 5.57468 5.64523 5.67579 5.79638 5.81676 5.85554 5.92832 5.98337 6.02124 6.10946 6.11726 6.17498 6.39505 6.43043 6.48107 6.58630 6.65005 6.85783 7.06303 7.38883 8.00916 8.15431 8.43420 9.22041 9.94736 10.15125 11.42631 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029649 B = 0.003402 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.161504 B = 8228.810560 C = 8462.792357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.105 4.105 4 C -0.140 4.140 5 C 0.511 3.489 6 O -0.544 6.544 7 N -0.611 5.611 8 C 0.107 3.893 9 C -0.136 4.136 10 C -0.111 4.111 11 C -0.106 4.106 12 H 0.068 0.932 13 C 0.186 3.814 14 H 0.056 0.944 15 C -0.168 4.168 16 N -0.746 5.746 17 C -0.238 4.238 18 H 0.090 0.910 19 C 0.003 3.997 20 N -0.935 5.935 21 Si 0.883 3.117 22 H -0.285 1.285 23 H -0.292 1.292 24 H -0.278 1.278 25 C 0.117 3.883 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.045 0.955 42 H 0.042 0.958 43 H 0.057 0.943 44 H 0.360 0.640 45 H 0.259 0.741 46 H 0.095 0.905 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.997 -18.794 7.519 25.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.143 4.143 4 C -0.180 4.180 5 C 0.300 3.700 6 O -0.422 6.422 7 N -0.344 5.344 8 C -0.016 4.016 9 C -0.174 4.174 10 C -0.149 4.149 11 C -0.126 4.126 12 H 0.086 0.914 13 C 0.076 3.924 14 H 0.074 0.926 15 C -0.228 4.228 16 N -0.389 5.389 17 C -0.368 4.368 18 H 0.108 0.892 19 C -0.192 4.192 20 N -0.583 5.583 21 Si 0.714 3.286 22 H -0.212 1.212 23 H -0.219 1.219 24 H -0.204 1.204 25 C -0.005 4.005 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.077 0.923 44 H 0.193 0.807 45 H 0.069 0.931 46 H 0.113 0.887 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.236 -18.128 7.606 25.497 hybrid contribution 0.158 -0.643 -1.295 1.454 sum -16.077 -18.771 6.311 25.508 Atomic orbital electron populations 1.21760 0.95734 1.01464 1.02064 1.21547 0.96132 0.96660 1.01906 1.21386 0.92806 0.96489 1.03652 1.21724 0.97979 0.94212 1.04040 1.20722 0.81769 0.91702 0.75845 1.90687 1.54795 1.46607 1.50065 1.48204 1.05440 1.07776 1.73011 1.21877 0.91148 0.89298 0.99325 1.22036 0.98519 0.98802 0.98075 1.21516 0.97755 0.92293 1.03347 1.21789 0.95854 0.96786 0.98191 0.91365 1.20129 0.89834 0.90052 0.92393 0.92621 1.22479 0.98981 1.01365 0.99998 1.42761 1.31557 1.49487 1.15081 1.19063 1.01637 1.14321 1.01763 0.89233 1.24656 0.97495 0.99203 0.97892 1.69697 1.17471 1.38866 1.32297 0.86570 0.76899 0.80299 0.84845 1.21215 1.21863 1.20390 1.21732 0.98247 0.82157 0.98411 0.92643 0.92838 0.92662 0.92025 0.92049 0.91233 0.91212 0.89117 0.89043 0.91198 0.90062 0.91761 0.90868 0.90456 0.91758 0.93632 0.93937 0.92340 0.80742 0.93130 0.88697 0.91491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.15 0.37 -0.64 16 2 C -0.12 -0.84 5.93 -26.74 -0.16 -1.00 16 3 C -0.11 -0.94 4.50 -26.73 -0.12 -1.06 16 4 C -0.14 -1.20 4.05 -27.88 -0.11 -1.31 16 5 C 0.51 6.52 7.70 -10.98 -0.08 6.44 16 6 O -0.54 -9.04 15.39 5.56 0.09 -8.96 16 7 N -0.61 -7.41 2.97 -172.52 -0.51 -7.92 16 8 C 0.11 0.98 6.37 -3.48 -0.02 0.96 16 9 C -0.14 -1.46 6.10 -26.39 -0.16 -1.62 16 10 C -0.11 -1.60 5.03 -26.69 -0.13 -1.73 16 11 C -0.11 -1.64 1.97 -90.52 -0.18 -1.82 16 12 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 13 C 0.19 3.48 2.47 -67.93 -0.17 3.31 16 14 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 15 C -0.17 -3.03 9.14 37.16 0.34 -2.69 16 16 N -0.75 -17.19 4.22 -53.43 -0.23 -17.42 16 17 C -0.24 -6.59 10.41 -15.06 -0.16 -6.75 16 18 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 19 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 20 N -0.94 -29.27 13.97 55.49 0.78 -28.50 16 21 Si 0.88 22.03 27.74 -169.99 -4.71 17.32 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 24 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 25 C 0.12 1.63 5.18 -3.73 -0.02 1.61 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 32 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 33 H 0.09 0.60 7.93 -51.93 -0.41 0.19 16 34 H 0.09 0.66 7.70 -51.93 -0.40 0.26 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.55 5.93 -51.93 -0.31 0.24 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 1.31 7.42 -51.93 -0.39 0.92 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.04 0.66 6.56 -51.93 -0.34 0.32 16 43 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.36 8.24 5.46 -40.82 -0.22 8.02 16 45 H 0.26 7.73 8.31 -40.82 -0.34 7.40 16 46 H 0.09 1.47 5.62 -51.93 -0.29 1.18 16 47 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 362.40 15.07 5.46 5.46 Total: -1.00 -32.44 362.40 -8.54 -40.98 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -8.71 Total: 5.33 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -0.70 Total: -6.30 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: 0.04 Total: -53.83 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.71 Total: 17.32 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.44 -8.54 -40.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753790381.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.812 kcal (2) G-P(sol) polarization free energy of solvation -32.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds