Wall clock time and date at job start Tue Mar 31 2020 06:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47131 * 2 1 4 4 C 1.53006 * 109.47127 * 180.02562 * 3 2 1 5 5 H 1.08998 * 115.54488 * 29.33497 * 4 3 2 6 6 C 1.52996 * 117.50166 * 243.62324 * 4 3 2 7 7 C 1.52994 * 59.99957 * 252.51305 * 6 4 3 8 8 H 1.09000 * 117.52287 * 107.48494 * 7 6 4 9 9 C 1.50703 * 117.49839 * 252.51159 * 7 6 4 10 10 O 1.21275 * 119.99978 * 68.61908 * 9 7 6 11 11 N 1.34776 * 119.99946 * 248.62587 * 9 7 6 12 12 C 1.46501 * 119.99941 * 179.97438 * 11 9 7 13 13 C 1.53001 * 109.46949 * 179.97438 * 12 11 9 14 14 H 1.09002 * 109.47216 * 294.99602 * 13 12 11 15 15 N 1.46496 * 109.47094 * 55.00038 * 13 12 11 16 16 C 1.36941 * 119.99728 * 204.99735 * 15 13 12 17 17 H 1.08001 * 120.00019 * 0.02562 * 16 15 13 18 18 C 1.38807 * 120.00058 * 179.97438 * 16 15 13 19 19 N 1.31618 * 120.00552 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 120.00050 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47023 * 89.99783 * 20 18 16 22 22 H 1.48497 * 109.47530 * 210.00046 * 20 18 16 23 23 H 1.48497 * 109.47246 * 330.00283 * 20 18 16 24 24 C 1.52997 * 109.46981 * 174.99912 * 13 12 11 25 25 C 1.53000 * 109.47383 * 60.00098 * 24 13 12 26 26 C 1.53000 * 109.47500 * 179.97438 * 24 13 12 27 27 H 1.09001 * 109.46997 * 299.99574 * 1 2 3 28 28 H 1.08992 * 109.47534 * 59.99520 * 1 2 3 29 29 H 1.08996 * 109.47134 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46993 * 239.99869 * 2 1 3 31 31 H 1.09004 * 109.47298 * 120.00283 * 2 1 3 32 32 H 1.09001 * 109.46832 * 60.00325 * 3 2 1 33 33 H 1.08993 * 109.47194 * 299.99846 * 3 2 1 34 34 H 1.09000 * 117.49759 * 0.02562 * 6 4 3 35 35 H 1.08997 * 117.50019 * 145.01677 * 6 4 3 36 36 H 0.96995 * 119.99897 * 359.97438 * 11 9 7 37 37 H 1.09001 * 109.46847 * 299.99527 * 12 11 9 38 38 H 1.09000 * 109.47364 * 59.99567 * 12 11 9 39 39 H 0.96993 * 120.00540 * 24.99743 * 15 13 12 40 40 H 0.96996 * 120.00814 * 180.02562 * 19 18 16 41 41 H 1.08999 * 109.47782 * 300.00021 * 24 13 12 42 42 H 1.09000 * 109.47243 * 59.99242 * 25 24 13 43 43 H 1.08994 * 109.47650 * 180.02562 * 25 24 13 44 44 H 1.09004 * 109.46826 * 300.00331 * 25 24 13 45 45 H 1.08996 * 109.46962 * 59.99384 * 26 24 13 46 46 H 1.08997 * 109.47522 * 180.02562 * 26 24 13 47 47 H 1.09008 * 109.46732 * 300.00183 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 4.0398 0.5852 -0.4828 6 6 4.2770 2.0452 1.2149 7 6 4.2764 2.7944 -0.1190 8 1 3.6512 3.6839 -0.1968 9 6 5.5688 2.8388 -0.8928 10 8 6.0111 1.8265 -1.3932 11 7 6.2333 4.0036 -1.0286 12 6 7.4900 4.0466 -1.7803 13 6 8.0338 5.4767 -1.7830 14 1 7.3487 6.1250 -2.3293 15 7 8.1617 5.9531 -0.4036 16 6 8.1254 7.2958 -0.1368 17 1 8.0021 8.0035 -0.9433 18 6 8.2459 7.7473 1.1702 19 7 8.2106 9.0377 1.4268 20 14 8.4584 6.5233 2.5653 21 1 9.9049 6.2672 2.7831 22 1 7.8617 7.0788 3.8065 23 1 7.7778 5.2508 2.2154 24 6 9.4059 5.4992 -2.4595 25 6 9.2725 5.0016 -3.9002 26 6 9.9496 6.9293 -2.4628 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8898 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6766 1.9562 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 3.6522 2.4414 2.0154 35 1 5.2122 1.5844 1.5330 36 1 5.8794 4.8132 -0.6286 37 1 8.2163 3.3822 -1.3122 38 1 7.3110 3.7244 -2.8061 39 1 8.2720 5.3176 0.3208 40 1 8.2952 9.3533 2.3401 41 1 10.0911 4.8510 -1.9133 42 1 8.5873 5.6498 -4.4465 43 1 10.2500 5.0172 -4.3820 44 1 8.8849 3.9828 -3.8982 45 1 10.0445 7.2843 -1.4367 46 1 10.9269 6.9455 -2.9452 47 1 9.2643 7.5773 -3.0094 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753839279.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:06 Heat of formation + Delta-G solvation = -32.239286 kcal Electronic energy + Delta-G solvation = -22608.861085 eV Core-core repulsion = 19405.628969 eV Total energy + Delta-G solvation = -3203.232115 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -39.87651 -37.83400 -36.85783 -34.01415 -33.89242 -33.15511 -30.85723 -28.60942 -27.51806 -26.27529 -24.50721 -22.93949 -22.12857 -21.50954 -20.62329 -20.01187 -19.34365 -17.75688 -16.90491 -15.84258 -15.42839 -15.38351 -14.94804 -14.43835 -14.24426 -14.06495 -13.58014 -13.50531 -13.12065 -13.01126 -12.76561 -12.51847 -12.32502 -12.19295 -12.11607 -11.65571 -11.50084 -11.26664 -11.20523 -11.11167 -11.02692 -10.90121 -10.64342 -10.31098 -10.28282 -10.15944 -10.08869 -9.99793 -9.58580 -9.50930 -8.96162 -8.71772 -7.35957 -5.83967 -3.20053 2.69184 3.31847 3.36337 3.37466 3.42128 3.84153 4.49276 4.52524 4.69963 4.75855 4.90698 4.96686 5.10389 5.14466 5.20343 5.27661 5.34794 5.40017 5.52212 5.57358 5.60084 5.65405 5.66805 5.68451 5.77672 5.82891 5.88687 5.92777 6.02528 6.05468 6.07889 6.17147 6.26050 6.29007 6.37881 6.49335 6.56622 6.63206 6.84721 6.99335 7.32187 7.85374 7.92075 8.34263 8.49500 9.12316 9.84673 10.04113 11.33638 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015504 B = 0.004124 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.609978 B = 6787.850341 C = 8101.028474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.090 4.090 4 C -0.119 4.119 5 H 0.116 0.884 6 C -0.149 4.149 7 C -0.189 4.189 8 H 0.123 0.877 9 C 0.539 3.461 10 O -0.555 6.555 11 N -0.712 5.712 12 C 0.110 3.890 13 C 0.175 3.825 14 H 0.062 0.938 15 N -0.746 5.746 16 C -0.241 4.241 17 H 0.095 0.905 18 C 0.008 3.992 19 N -0.931 5.931 20 Si 0.879 3.121 21 H -0.285 1.285 22 H -0.292 1.292 23 H -0.277 1.277 24 C -0.109 4.109 25 C -0.149 4.149 26 C -0.139 4.139 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.410 0.590 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.362 0.638 40 H 0.260 0.740 41 H 0.061 0.939 42 H 0.051 0.949 43 H 0.047 0.953 44 H 0.050 0.950 45 H 0.088 0.912 46 H 0.031 0.969 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.890 -13.998 -4.403 17.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.128 4.128 4 C -0.138 4.138 5 H 0.134 0.866 6 C -0.186 4.186 7 C -0.210 4.210 8 H 0.141 0.859 9 C 0.325 3.675 10 O -0.434 6.434 11 N -0.363 5.363 12 C -0.014 4.014 13 C 0.065 3.935 14 H 0.080 0.920 15 N -0.389 5.389 16 C -0.371 4.371 17 H 0.112 0.888 18 C -0.188 4.188 19 N -0.578 5.578 20 Si 0.710 3.290 21 H -0.212 1.212 22 H -0.219 1.219 23 H -0.203 1.203 24 C -0.130 4.130 25 C -0.207 4.207 26 C -0.197 4.197 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.121 0.879 35 H 0.116 0.884 36 H 0.247 0.753 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.195 0.805 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.107 0.893 46 H 0.050 0.950 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -9.588 -14.422 -4.770 17.963 hybrid contribution 0.201 -0.201 1.299 1.330 sum -9.388 -14.622 -3.470 17.719 Atomic orbital electron populations 1.21780 0.95943 1.01531 1.01800 1.21499 0.95568 0.96606 1.02280 1.21245 0.92064 0.97230 1.02235 1.22420 0.94491 0.95570 1.01277 0.86571 1.23081 1.03021 1.02104 0.90432 1.22308 0.97981 0.98650 1.02034 0.85919 1.19627 0.84694 0.83299 0.79877 1.90647 1.69084 1.34198 1.49493 1.45965 1.24329 1.11144 1.54848 1.21791 0.85008 0.98743 0.95862 1.20526 0.94402 0.91226 0.87322 0.91993 1.42834 1.89009 1.05143 1.01946 1.19044 1.42356 0.81813 0.93861 0.88768 1.24650 1.01962 0.95374 0.96859 1.69686 1.56833 1.11806 1.19486 0.86637 0.78037 0.81121 0.83215 1.21200 1.21861 1.20315 1.21697 0.98757 0.97920 0.94660 1.21938 1.01032 1.00503 0.97226 1.21826 0.98184 0.95346 1.04312 0.92783 0.92741 0.92832 0.91846 0.91856 0.91611 0.91411 0.87870 0.88419 0.75335 0.92055 0.91217 0.80516 0.93024 0.92032 0.92996 0.93401 0.93098 0.89287 0.94965 0.93775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.71 16 2 C -0.12 -0.99 5.89 -26.73 -0.16 -1.14 16 3 C -0.09 -0.81 5.50 -26.73 -0.15 -0.96 16 4 C -0.12 -1.34 5.25 -90.62 -0.48 -1.82 16 5 H 0.12 1.48 7.60 -51.93 -0.39 1.09 16 6 C -0.15 -1.72 9.88 -26.74 -0.26 -1.99 16 7 C -0.19 -2.42 5.91 -91.78 -0.54 -2.96 16 8 H 0.12 1.38 8.14 -51.93 -0.42 0.96 16 9 C 0.54 8.70 7.61 -10.98 -0.08 8.61 16 10 O -0.56 -10.53 16.26 5.56 0.09 -10.44 16 11 N -0.71 -11.45 5.39 -60.29 -0.32 -11.77 16 12 C 0.11 1.80 4.73 -4.04 -0.02 1.78 16 13 C 0.18 3.09 2.18 -67.93 -0.15 2.94 16 14 H 0.06 1.13 8.08 -51.93 -0.42 0.72 16 15 N -0.75 -15.89 4.24 -53.43 -0.23 -16.12 16 16 C -0.24 -6.13 8.05 -15.06 -0.12 -6.25 16 17 H 0.09 2.59 7.63 -52.49 -0.40 2.19 16 18 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 19 N -0.93 -27.77 13.97 55.49 0.78 -27.00 16 20 Si 0.88 21.18 27.74 -169.99 -4.71 16.46 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.28 -6.29 6.52 56.52 0.37 -5.92 16 24 C -0.11 -1.79 2.69 -90.62 -0.24 -2.04 16 25 C -0.15 -2.04 8.84 37.16 0.33 -1.71 16 26 C -0.14 -2.51 8.26 37.16 0.31 -2.21 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.55 7.88 -51.93 -0.41 0.14 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.10 1.01 8.03 -51.93 -0.42 0.60 16 35 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.41 6.59 8.14 -40.82 -0.33 6.26 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.07 1.08 6.71 -51.93 -0.35 0.73 16 39 H 0.36 7.89 5.66 -40.82 -0.23 7.65 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.05 0.66 6.54 -51.93 -0.34 0.32 16 45 H 0.09 1.93 6.01 -51.93 -0.31 1.61 16 46 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.04 0.79 8.14 -51.92 -0.42 0.37 16 LS Contribution 373.10 15.07 5.62 5.62 Total: -1.00 -29.65 373.10 -8.76 -38.42 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: -8.69 Total: 13.18 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -1.29 Total: -8.34 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: 0.22 Total: -54.89 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.09 Total: -10.44 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.71 Total: 16.46 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.65 -8.76 -38.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753839279.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.177 kcal (2) G-P(sol) polarization free energy of solvation -29.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds