Wall clock time and date at job start Tue Mar 31 2020 06:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47131 * 2 1 4 4 C 1.53006 * 109.47127 * 180.02562 * 3 2 1 5 5 H 1.08998 * 115.54488 * 29.33497 * 4 3 2 6 6 C 1.52996 * 117.50166 * 243.62324 * 4 3 2 7 7 C 1.52994 * 59.99957 * 252.51305 * 6 4 3 8 8 H 1.08999 * 117.50088 * 107.49426 * 7 6 4 9 9 C 1.50703 * 117.49839 * 252.51159 * 7 6 4 10 10 O 1.21275 * 119.99978 * 68.61908 * 9 7 6 11 11 N 1.34776 * 119.99946 * 248.62587 * 9 7 6 12 12 C 1.46501 * 119.99941 * 179.97438 * 11 9 7 13 13 C 1.53001 * 109.46949 * 179.97438 * 12 11 9 14 14 H 1.08998 * 109.47457 * 65.00041 * 13 12 11 15 15 N 1.46500 * 109.47338 * 304.99539 * 13 12 11 16 16 C 1.36937 * 120.00122 * 154.99821 * 15 13 12 17 17 H 1.08001 * 119.99865 * 0.02562 * 16 15 13 18 18 C 1.38812 * 120.00030 * 180.02562 * 16 15 13 19 19 N 1.31619 * 120.00038 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99828 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47318 * 90.00202 * 20 18 16 22 22 H 1.48505 * 109.46930 * 210.00176 * 20 18 16 23 23 H 1.48497 * 109.47035 * 329.99779 * 20 18 16 24 24 C 1.53008 * 109.46839 * 185.00001 * 13 12 11 25 25 C 1.53001 * 109.46839 * 180.02562 * 24 13 12 26 26 C 1.52998 * 109.47167 * 299.99715 * 24 13 12 27 27 H 1.09001 * 109.46997 * 299.99574 * 1 2 3 28 28 H 1.08992 * 109.47534 * 59.99520 * 1 2 3 29 29 H 1.08996 * 109.47134 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46993 * 239.99869 * 2 1 3 31 31 H 1.09004 * 109.47298 * 120.00283 * 2 1 3 32 32 H 1.09001 * 109.46832 * 60.00325 * 3 2 1 33 33 H 1.08993 * 109.47194 * 299.99846 * 3 2 1 34 34 H 1.09000 * 117.49759 * 0.02562 * 6 4 3 35 35 H 1.08997 * 117.50019 * 145.01677 * 6 4 3 36 36 H 0.96995 * 119.99897 * 359.97438 * 11 9 7 37 37 H 1.09001 * 109.46847 * 299.99527 * 12 11 9 38 38 H 1.09000 * 109.47364 * 59.99567 * 12 11 9 39 39 H 0.96998 * 119.99861 * 335.00749 * 15 13 12 40 40 H 0.96997 * 120.00028 * 180.02562 * 19 18 16 41 41 H 1.08998 * 109.47064 * 59.99799 * 24 13 12 42 42 H 1.08998 * 109.47457 * 60.00040 * 25 24 13 43 43 H 1.08997 * 109.46888 * 180.02562 * 25 24 13 44 44 H 1.08998 * 109.46952 * 299.99707 * 25 24 13 45 45 H 1.09004 * 109.46681 * 60.00087 * 26 24 13 46 46 H 1.08997 * 109.46972 * 179.97438 * 26 24 13 47 47 H 1.08997 * 109.47203 * 300.00790 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 4.0398 0.5852 -0.4828 6 6 4.2770 2.0452 1.2149 7 6 4.2764 2.7944 -0.1190 8 1 3.6512 3.6839 -0.1964 9 6 5.5688 2.8388 -0.8928 10 8 6.0111 1.8265 -1.3932 11 7 6.2333 4.0036 -1.0286 12 6 7.4900 4.0466 -1.7803 13 6 8.0338 5.4767 -1.7830 14 1 8.2962 5.7676 -0.7658 15 7 7.0108 6.3873 -2.3029 16 6 7.0274 7.7100 -1.9486 17 1 7.7951 8.0819 -1.2861 18 6 6.0577 8.5727 -2.4408 19 7 5.1219 8.1193 -3.2477 20 14 6.0810 10.3770 -1.9580 21 1 6.9005 11.1400 -2.9334 22 1 4.6936 10.9067 -1.9557 23 1 6.6671 10.5188 -0.6009 24 6 9.2781 5.5474 -2.6706 25 6 9.8223 6.9774 -2.6728 26 6 10.3466 4.5965 -2.1277 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8898 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6766 1.9562 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 3.6522 2.4414 2.0154 35 1 5.2122 1.5844 1.5330 36 1 5.8794 4.8132 -0.6286 37 1 8.2163 3.3822 -1.3122 38 1 7.3110 3.7244 -2.8061 39 1 6.3215 6.0533 -2.8980 40 1 4.4446 8.7222 -3.5919 41 1 9.0158 5.2565 -3.6878 42 1 10.0848 7.2679 -1.6556 43 1 10.7084 7.0279 -3.3055 44 1 9.0613 7.6552 -3.0594 45 1 9.9591 3.5777 -2.1258 46 1 11.2328 4.6465 -2.7603 47 1 10.6089 4.8873 -1.1105 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753839281.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:12 Heat of formation + Delta-G solvation = -36.279350 kcal Electronic energy + Delta-G solvation = -22513.649663 eV Core-core repulsion = 19310.242357 eV Total energy + Delta-G solvation = -3203.407306 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.74834 -37.69252 -36.73291 -33.92904 -33.76396 -33.12699 -30.41057 -28.38333 -27.41985 -26.13417 -24.44339 -23.12909 -22.08263 -21.52120 -20.53478 -19.87088 -19.13280 -17.40800 -16.78132 -15.72768 -15.32226 -15.24545 -14.83023 -14.34052 -14.21356 -13.90978 -13.48057 -13.36771 -13.27092 -13.01140 -12.63801 -12.39980 -12.09226 -12.03827 -12.02520 -11.63071 -11.41779 -11.12612 -11.04896 -10.96119 -10.94014 -10.84633 -10.64333 -10.29650 -10.21346 -10.11475 -10.00279 -9.93699 -9.56145 -9.44954 -8.92751 -8.56167 -7.03985 -5.83061 -3.12264 2.81180 3.38252 3.44396 3.45776 3.53853 3.91785 4.52497 4.58925 4.78659 4.84836 4.98831 5.05580 5.19675 5.33904 5.34667 5.40964 5.42952 5.54322 5.61759 5.63408 5.68008 5.70067 5.75431 5.77036 5.90424 5.91984 5.99018 6.03046 6.10627 6.14424 6.19214 6.24826 6.35258 6.37617 6.46261 6.54083 6.63129 6.69393 6.97029 7.07542 7.29038 7.65356 8.00807 8.34214 8.63937 9.46208 10.01216 10.37267 11.38731 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014311 B = 0.003962 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.072101 B = 7064.918440 C = 8601.412974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.091 4.091 4 C -0.119 4.119 5 H 0.116 0.884 6 C -0.151 4.151 7 C -0.186 4.186 8 H 0.124 0.876 9 C 0.539 3.461 10 O -0.558 6.558 11 N -0.707 5.707 12 C 0.114 3.886 13 C 0.170 3.830 14 H 0.053 0.947 15 N -0.721 5.721 16 C -0.236 4.236 17 H 0.073 0.927 18 C -0.011 4.011 19 N -0.929 5.929 20 Si 0.902 3.098 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.109 4.109 25 C -0.139 4.139 26 C -0.149 4.149 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.411 0.589 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.385 0.615 40 H 0.255 0.745 41 H 0.062 0.938 42 H 0.040 0.960 43 H 0.031 0.969 44 H 0.086 0.914 45 H 0.050 0.950 46 H 0.045 0.955 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.113 -12.103 7.671 14.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.129 4.129 4 C -0.137 4.137 5 H 0.134 0.866 6 C -0.188 4.188 7 C -0.208 4.208 8 H 0.142 0.858 9 C 0.325 3.675 10 O -0.438 6.438 11 N -0.358 5.358 12 C -0.011 4.011 13 C 0.060 3.940 14 H 0.071 0.929 15 N -0.363 5.363 16 C -0.367 4.367 17 H 0.091 0.909 18 C -0.207 4.207 19 N -0.577 5.577 20 Si 0.733 3.267 21 H -0.218 1.218 22 H -0.219 1.219 23 H -0.208 1.208 24 C -0.131 4.131 25 C -0.196 4.196 26 C -0.207 4.207 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.120 0.880 35 H 0.115 0.885 36 H 0.247 0.753 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.219 0.781 40 H 0.065 0.935 41 H 0.081 0.919 42 H 0.059 0.941 43 H 0.050 0.950 44 H 0.105 0.895 45 H 0.069 0.931 46 H 0.064 0.936 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.777 -12.614 7.387 14.725 hybrid contribution -0.297 1.532 0.060 1.562 sum -2.074 -11.081 7.448 13.512 Atomic orbital electron populations 1.21782 0.95980 1.01464 1.01844 1.21496 0.95549 0.96653 1.02200 1.21249 0.92115 0.97160 1.02335 1.22401 0.94503 0.95738 1.01091 0.86614 1.23060 1.02901 1.02392 0.90453 1.22323 0.98112 0.98736 1.01583 0.85776 1.19592 0.84552 0.83343 0.79968 1.90639 1.69025 1.34402 1.49689 1.45919 1.24409 1.10929 1.54535 1.21731 0.84893 0.98409 0.96049 1.20543 0.89302 0.87689 0.96494 0.92903 1.42462 1.30846 1.05820 1.57129 1.19196 1.09264 0.84952 1.23332 0.90937 1.24727 0.97921 0.97962 1.00099 1.69661 1.17061 1.34438 1.36550 0.86268 0.76746 0.85652 0.77986 1.21768 1.21872 1.20779 1.21733 0.95671 0.95580 1.00161 1.21819 1.00265 0.97296 1.00266 1.21940 0.98762 0.99348 1.00627 0.92825 0.92669 0.92885 0.91840 0.91946 0.91672 0.91264 0.88035 0.88541 0.75285 0.91724 0.91999 0.78093 0.93501 0.91905 0.94061 0.94995 0.89511 0.93064 0.93565 0.93200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 2 C -0.12 -1.07 5.89 -26.73 -0.16 -1.23 16 3 C -0.09 -0.91 5.50 -26.73 -0.15 -1.06 16 4 C -0.12 -1.42 5.25 -90.62 -0.48 -1.90 16 5 H 0.12 1.56 7.60 -51.93 -0.39 1.16 16 6 C -0.15 -1.69 9.88 -26.74 -0.26 -1.95 16 7 C -0.19 -2.54 5.91 -91.78 -0.54 -3.08 16 8 H 0.12 1.61 8.14 -51.93 -0.42 1.19 16 9 C 0.54 9.20 7.61 -10.98 -0.08 9.11 16 10 O -0.56 -11.11 16.26 5.56 0.09 -11.02 16 11 N -0.71 -12.06 5.39 -60.29 -0.32 -12.39 16 12 C 0.11 1.97 4.73 -4.04 -0.02 1.95 16 13 C 0.17 3.14 2.18 -67.93 -0.15 2.99 16 14 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 15 N -0.72 -16.32 4.44 -53.42 -0.24 -16.56 16 16 C -0.24 -5.94 7.57 -15.06 -0.11 -6.05 16 17 H 0.07 1.79 7.39 -52.49 -0.39 1.40 16 18 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 19 N -0.93 -26.56 13.06 55.49 0.72 -25.84 16 20 Si 0.90 21.35 29.55 -169.99 -5.02 16.33 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 C -0.11 -1.88 2.69 -90.62 -0.24 -2.13 16 25 C -0.14 -2.50 8.26 37.16 0.31 -2.20 16 26 C -0.15 -2.12 8.84 37.16 0.33 -1.79 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.59 7.88 -51.93 -0.41 0.18 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.10 0.94 8.03 -51.93 -0.42 0.52 16 35 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.41 7.06 8.14 -40.82 -0.33 6.73 16 37 H 0.06 1.06 6.71 -51.93 -0.35 0.71 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.39 9.60 7.80 -40.82 -0.32 9.29 16 40 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.09 1.85 6.01 -51.93 -0.31 1.54 16 45 H 0.05 0.70 6.54 -51.93 -0.34 0.36 16 46 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 376.22 15.07 5.67 5.67 Total: -1.00 -28.58 376.22 -9.12 -37.70 By element: Atomic # 1 Polarization: 23.38 SS G_CDS: -8.73 Total: 14.64 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -1.29 Total: -8.54 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: 0.16 Total: -54.78 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.02 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -28.58 -9.12 -37.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753839281.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.419 kcal (2) G-P(sol) polarization free energy of solvation -28.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds