Wall clock time and date at job start Tue Mar 31 2020 05:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47360 * 2 1 4 4 C 1.52999 * 109.47669 * 239.99702 * 2 1 3 5 5 C 1.50703 * 109.46907 * 119.99602 * 2 1 3 6 6 O 1.21282 * 120.00020 * 359.97438 * 5 2 1 7 7 N 1.34778 * 119.99867 * 180.02562 * 5 2 1 8 8 C 1.46507 * 119.99609 * 180.02562 * 7 5 2 9 9 H 1.08996 * 109.46955 * 324.99659 * 8 7 5 10 10 C 1.52996 * 109.47258 * 85.00044 * 8 7 5 11 11 C 1.52997 * 109.47131 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.46991 * 299.99311 * 11 10 8 13 13 C 1.53006 * 109.46626 * 60.00378 * 12 11 10 14 14 C 1.52997 * 109.47127 * 299.99539 * 13 12 11 15 15 H 1.08996 * 109.46952 * 300.00302 * 14 13 12 16 16 C 1.52996 * 109.47131 * 179.97438 * 14 13 12 17 17 N 1.46501 * 109.47049 * 65.00110 * 16 14 13 18 18 C 1.36933 * 120.00222 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00082 * 0.02562 * 18 17 16 20 20 C 1.38813 * 120.00112 * 179.97438 * 18 17 16 21 21 N 1.31619 * 120.00041 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00107 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47132 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47530 * 120.00051 * 22 20 18 25 25 H 1.48501 * 109.47165 * 240.00189 * 22 20 18 26 26 H 1.08999 * 109.47601 * 300.00783 * 1 2 3 27 27 H 1.09000 * 109.46893 * 60.00481 * 1 2 3 28 28 H 1.09002 * 109.47556 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47239 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.46725 * 299.99622 * 3 2 1 31 31 H 1.08993 * 109.47005 * 59.99213 * 3 2 1 32 32 H 1.09002 * 109.46853 * 300.00702 * 4 2 1 33 33 H 1.09000 * 109.47112 * 59.99951 * 4 2 1 34 34 H 1.08995 * 109.47606 * 180.02562 * 4 2 1 35 35 H 0.97001 * 120.00320 * 359.97438 * 7 5 2 36 36 H 1.09001 * 109.46993 * 300.00050 * 10 8 7 37 37 H 1.09000 * 109.47380 * 59.99156 * 10 8 7 38 38 H 1.09002 * 109.47153 * 179.97438 * 11 10 8 39 39 H 1.08993 * 109.47194 * 60.00154 * 11 10 8 40 40 H 1.08993 * 109.47839 * 300.00447 * 12 11 10 41 41 H 1.09000 * 109.47160 * 180.02562 * 12 11 10 42 42 H 1.09001 * 109.46801 * 59.99811 * 13 12 11 43 43 H 1.09001 * 109.46998 * 179.97438 * 13 12 11 44 44 H 1.08996 * 109.47548 * 185.00027 * 16 14 13 45 45 H 1.08997 * 109.47395 * 305.00575 * 16 14 13 46 46 H 0.97005 * 120.00218 * 0.02562 * 17 16 14 47 47 H 0.97001 * 119.99907 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0322 -0.7103 1.2305 6 8 1.2441 -1.1708 2.0291 7 7 3.3573 -0.8330 1.4441 8 6 3.8455 -1.5241 2.6401 9 1 3.1727 -1.3258 3.4744 10 6 3.8977 -3.0298 2.3736 11 6 4.4082 -3.7514 3.6224 12 6 5.8106 -3.2455 3.9662 13 6 5.7585 -1.7398 4.2328 14 6 5.2480 -1.0182 2.9839 15 1 5.9205 -1.2164 2.1494 16 6 5.1952 0.4874 3.2507 17 7 6.5535 0.9937 3.4628 18 6 6.7563 2.3233 3.7200 19 1 5.9149 2.9987 3.7669 20 6 8.0433 2.8028 3.9215 21 7 9.0687 1.9797 3.8648 22 14 8.3198 4.6165 4.2730 23 1 7.0140 5.3235 4.2831 24 1 8.9765 4.7698 5.5961 25 1 9.1890 5.1982 3.2188 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6766 -1.7489 -1.2491 33 1 1.6768 -0.2075 -2.1392 34 1 3.1300 -0.7217 -1.2489 35 1 3.9877 -0.4645 0.8056 36 1 2.8987 -3.3901 2.1281 37 1 4.5705 -3.2280 1.5393 38 1 4.4449 -4.8241 3.4327 39 1 3.7357 -3.5532 4.4569 40 1 6.4831 -3.4436 3.1317 41 1 6.1745 -3.7599 4.8556 42 1 5.0859 -1.5417 5.0674 43 1 6.7575 -1.3794 4.4781 44 1 4.7488 0.9928 2.3943 45 1 4.5936 0.6782 4.1393 46 1 7.3094 0.3872 3.4203 47 1 9.9680 2.3147 4.0060 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754351665.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:56 Heat of formation + Delta-G solvation = -66.328695 kcal Electronic energy + Delta-G solvation = -23628.998027 eV Core-core repulsion = 20424.287684 eV Total energy + Delta-G solvation = -3204.710343 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.36395 -38.45866 -35.58907 -34.60931 -34.02748 -31.87957 -29.66674 -29.22718 -27.47683 -27.18197 -25.24890 -23.56232 -22.92133 -21.38887 -20.61308 -20.04697 -18.90288 -17.26488 -16.60849 -16.18374 -15.16818 -14.84146 -14.68991 -14.29452 -14.00462 -13.93049 -13.77141 -13.60410 -13.18122 -12.98753 -12.71902 -12.49272 -12.43137 -12.27390 -11.98160 -11.83164 -11.79060 -11.51237 -11.11674 -11.05751 -11.00248 -10.89328 -10.87042 -10.71118 -10.34728 -10.19353 -10.07612 -9.93047 -9.64649 -9.45107 -8.90073 -8.77685 -6.91303 -5.77204 -3.05208 2.77081 3.28803 3.42554 3.48713 3.50590 4.54245 4.57704 4.65914 4.75743 4.84649 4.95226 5.06206 5.17568 5.28629 5.38570 5.41885 5.47410 5.58122 5.60146 5.61423 5.66224 5.69261 5.70240 5.74208 5.76982 5.81679 5.91376 5.96192 6.11265 6.14447 6.16680 6.18473 6.24685 6.27430 6.31012 6.41864 6.58136 6.64277 6.70797 6.80874 6.93305 7.66242 7.70676 8.36719 8.42023 9.53423 10.11430 10.46373 11.45784 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013687 B = 0.005113 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.269028 B = 5474.887406 C = 7082.457679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.088 4.088 3 C -0.142 4.142 4 C -0.140 4.140 5 C 0.523 3.477 6 O -0.546 6.546 7 N -0.718 5.718 8 C 0.153 3.847 9 H 0.086 0.914 10 C -0.125 4.125 11 C -0.115 4.115 12 C -0.121 4.121 13 C -0.107 4.107 14 C -0.100 4.100 15 H 0.074 0.926 16 C 0.159 3.841 17 N -0.731 5.731 18 C -0.237 4.237 19 H 0.069 0.931 20 C -0.014 4.014 21 N -0.934 5.934 22 Si 0.905 3.095 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.401 0.599 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.079 0.921 44 H 0.019 0.981 45 H 0.017 0.983 46 H 0.384 0.616 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.720 -9.403 -8.578 17.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.091 4.091 3 C -0.200 4.200 4 C -0.197 4.197 5 C 0.309 3.691 6 O -0.423 6.423 7 N -0.368 5.368 8 C 0.049 3.951 9 H 0.104 0.896 10 C -0.164 4.164 11 C -0.153 4.153 12 C -0.159 4.159 13 C -0.145 4.145 14 C -0.119 4.119 15 H 0.092 0.908 16 C 0.031 3.969 17 N -0.375 5.375 18 C -0.368 4.368 19 H 0.087 0.913 20 C -0.210 4.210 21 N -0.583 5.583 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.236 0.764 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.097 0.903 44 H 0.037 0.963 45 H 0.035 0.965 46 H 0.218 0.782 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.322 -9.548 -7.965 18.223 hybrid contribution 0.865 1.043 -0.111 1.360 sum -12.456 -8.504 -8.076 17.109 Atomic orbital electron populations 1.21640 0.92205 1.02567 1.01918 1.20822 0.97858 0.96655 0.93765 1.21879 1.01754 0.93520 1.02823 1.21858 1.01371 1.00381 0.96101 1.20513 0.82312 0.79111 0.87124 1.90665 1.55428 1.49131 1.47058 1.46119 1.06945 1.58172 1.25564 1.20993 0.95671 0.90846 0.87637 0.89583 1.21882 1.01150 0.95013 0.98323 1.21483 0.97088 0.99035 0.97668 1.21594 0.96453 0.96542 1.01270 1.21492 1.02671 0.93514 0.96821 1.21586 0.94449 0.96889 0.98957 0.90793 1.20657 0.88891 0.89870 0.97438 1.42376 1.01885 1.07229 1.86035 1.19263 0.92286 0.85209 1.40034 0.91288 1.24713 0.95574 0.97743 1.02927 1.69664 0.98094 1.33507 1.56992 0.86144 0.77597 0.85113 0.77520 1.20606 1.21879 1.21904 0.91956 0.92241 0.92137 0.91686 0.91522 0.91905 0.92229 0.91471 0.92014 0.76444 0.91925 0.91996 0.92237 0.91945 0.92056 0.92125 0.92083 0.90266 0.96350 0.96468 0.78235 0.93608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.30 7.76 37.15 0.29 -1.01 16 2 C -0.09 -0.94 0.87 -155.66 -0.14 -1.07 16 3 C -0.14 -1.46 8.37 37.16 0.31 -1.15 16 4 C -0.14 -1.20 8.37 37.16 0.31 -0.89 16 5 C 0.52 7.25 6.45 -10.98 -0.07 7.18 16 6 O -0.55 -9.43 15.64 5.56 0.09 -9.34 16 7 N -0.72 -9.41 4.09 -53.80 -0.22 -9.63 16 8 C 0.15 2.17 1.90 -67.93 -0.13 2.04 16 9 H 0.09 1.40 7.58 -51.93 -0.39 1.01 16 10 C -0.12 -1.56 5.49 -26.73 -0.15 -1.71 16 11 C -0.11 -1.34 5.92 -26.73 -0.16 -1.50 16 12 C -0.12 -1.52 5.92 -26.73 -0.16 -1.68 16 13 C -0.11 -1.65 5.08 -26.73 -0.14 -1.78 16 14 C -0.10 -1.56 1.80 -90.62 -0.16 -1.73 16 15 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 16 C 0.16 3.16 5.56 -4.04 -0.02 3.14 16 17 N -0.73 -18.08 5.33 -59.91 -0.32 -18.40 16 18 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 19 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 20 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 21 N -0.93 -27.92 13.06 55.49 0.72 -27.20 16 22 Si 0.90 22.36 29.55 -169.99 -5.02 17.33 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.66 8.10 -51.93 -0.42 0.23 16 29 H 0.06 0.68 7.56 -51.93 -0.39 0.29 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.50 7.56 -51.93 -0.39 0.11 16 35 H 0.40 4.76 7.23 -40.82 -0.30 4.46 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.08 1.41 7.18 -51.93 -0.37 1.04 16 44 H 0.02 0.37 7.30 -51.93 -0.38 -0.01 16 45 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.38 9.92 6.85 -40.82 -0.28 9.64 16 47 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 365.58 15.07 5.51 5.51 Total: -1.00 -31.34 365.58 -8.51 -39.85 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -8.81 Total: 9.27 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -0.46 Total: -7.39 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: 0.19 Total: -55.23 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.09 Total: -9.34 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.34 -8.51 -39.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754351665.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.480 kcal (2) G-P(sol) polarization free energy of solvation -31.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds