Wall clock time and date at job start Tue Mar 31 2020 05:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47067 * 2 1 4 4 C 1.52997 * 109.47613 * 239.99398 * 2 1 3 5 5 C 1.50705 * 109.47066 * 119.99078 * 2 1 3 6 6 O 1.21279 * 119.99776 * 0.02562 * 5 2 1 7 7 N 1.34776 * 120.00192 * 179.97438 * 5 2 1 8 8 C 1.46493 * 120.00417 * 180.02562 * 7 5 2 9 9 H 1.09008 * 109.46863 * 35.00078 * 8 7 5 10 10 C 1.52997 * 109.47018 * 275.00428 * 8 7 5 11 11 C 1.53002 * 109.47369 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.46654 * 59.99819 * 11 10 8 13 13 C 1.52997 * 109.47380 * 300.00174 * 12 11 10 14 14 C 1.52994 * 109.47460 * 154.99940 * 8 7 5 15 15 H 1.09008 * 109.46970 * 60.00203 * 14 8 7 16 16 C 1.52997 * 109.47404 * 300.00252 * 14 8 7 17 17 N 1.46505 * 109.47212 * 174.99693 * 16 14 8 18 18 C 1.36936 * 119.99992 * 179.97438 * 17 16 14 19 19 H 1.08006 * 119.99834 * 0.02562 * 18 17 16 20 20 C 1.38801 * 120.00093 * 180.02562 * 18 17 16 21 21 N 1.31622 * 120.00145 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00180 * 0.02562 * 20 18 17 23 23 H 1.48492 * 109.47586 * 89.99558 * 22 20 18 24 24 H 1.48505 * 109.47293 * 210.00502 * 22 20 18 25 25 H 1.48505 * 109.46772 * 329.99807 * 22 20 18 26 26 H 1.09000 * 109.46882 * 300.00375 * 1 2 3 27 27 H 1.09000 * 109.47240 * 60.00316 * 1 2 3 28 28 H 1.09001 * 109.47041 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47093 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46620 * 299.99424 * 3 2 1 31 31 H 1.08996 * 109.47323 * 59.99339 * 3 2 1 32 32 H 1.08998 * 109.46680 * 300.00382 * 4 2 1 33 33 H 1.09000 * 109.46584 * 59.99885 * 4 2 1 34 34 H 1.08997 * 109.47666 * 179.97438 * 4 2 1 35 35 H 0.97006 * 119.99667 * 0.02562 * 7 5 2 36 36 H 1.09002 * 109.47754 * 59.99993 * 10 8 7 37 37 H 1.08995 * 109.47630 * 299.99468 * 10 8 7 38 38 H 1.08998 * 109.47238 * 300.00562 * 11 10 8 39 39 H 1.08992 * 109.47406 * 179.97438 * 11 10 8 40 40 H 1.09000 * 109.46811 * 179.97438 * 12 11 10 41 41 H 1.08998 * 109.47136 * 60.00111 * 12 11 10 42 42 H 1.09008 * 109.47017 * 300.00189 * 13 12 11 43 43 H 1.08998 * 109.47192 * 180.02562 * 13 12 11 44 44 H 1.09002 * 109.47153 * 54.99686 * 16 14 8 45 45 H 1.09001 * 109.46832 * 294.99876 * 16 14 8 46 46 H 0.96996 * 119.99606 * 0.02562 * 17 16 14 47 47 H 0.97010 * 119.99864 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0323 -0.7102 1.2306 6 8 1.2442 -1.1714 2.0287 7 7 3.3574 -0.8338 1.4437 8 6 3.8457 -1.5247 2.6396 9 1 3.1729 -2.3466 2.8846 10 6 3.8976 -0.5418 3.8110 11 6 4.4070 -1.2634 5.0602 12 6 5.8094 -1.8146 4.7944 13 6 5.7575 -2.7976 3.6231 14 6 5.2480 -2.0755 2.3736 15 1 5.9208 -1.2536 2.1286 16 6 5.1962 -3.0585 1.2023 17 7 6.5548 -3.4947 0.8703 18 6 6.7582 -4.3822 -0.1525 19 1 5.9171 -4.7603 -0.7147 20 6 8.0453 -4.7960 -0.4667 21 7 8.2409 -5.6487 -1.4501 22 14 9.5001 -4.1426 0.5061 23 1 9.7626 -5.0351 1.6635 24 1 10.7002 -4.0987 -0.3675 25 1 9.1939 -2.7744 0.9955 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1299 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6767 -1.7490 -1.2490 33 1 1.6767 -0.2076 -2.1391 34 1 3.1301 -0.7210 -1.2493 35 1 3.9877 -0.4653 0.8051 36 1 2.8985 -0.1493 4.0006 37 1 4.5703 0.2801 3.5661 38 1 3.7341 -2.0852 5.3050 39 1 4.4444 -0.5631 5.8945 40 1 6.1725 -2.3283 5.6846 41 1 6.4824 -0.9929 4.5496 42 1 5.0844 -3.6193 3.8679 43 1 6.7564 -3.1906 3.4341 44 1 4.7501 -2.5689 0.3366 45 1 4.5945 -3.9237 1.4805 46 1 7.3101 -3.1554 1.3755 47 1 9.1405 -5.9381 -1.6694 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754351666.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:00 Heat of formation + Delta-G solvation = -61.966656 kcal Electronic energy + Delta-G solvation = -23700.844204 eV Core-core repulsion = 20496.323013 eV Total energy + Delta-G solvation = -3204.521191 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.42492 -38.56794 -35.62039 -34.80693 -34.10713 -31.94815 -30.04871 -29.44378 -27.48964 -27.20229 -25.50586 -23.63731 -22.63025 -21.42562 -20.71809 -20.14258 -18.99936 -17.67524 -16.71238 -16.28694 -15.20088 -14.88565 -14.69897 -14.36712 -14.18059 -14.00196 -13.88084 -13.66617 -13.30869 -12.92692 -12.75803 -12.61659 -12.48600 -12.31336 -12.07974 -11.96929 -11.83798 -11.69531 -11.22803 -11.09691 -11.07409 -11.01189 -10.98200 -10.81657 -10.47302 -10.36227 -10.09664 -10.03332 -9.58999 -9.50436 -8.94350 -8.83641 -7.23376 -5.77674 -3.13003 2.73262 3.23064 3.34837 3.37597 3.43399 4.51369 4.57556 4.62701 4.69601 4.73641 4.84533 4.94917 5.11686 5.14593 5.26866 5.40020 5.45870 5.48188 5.53657 5.54096 5.56445 5.59432 5.62671 5.68418 5.73464 5.76437 5.80555 5.83185 5.94217 6.05087 6.10099 6.11793 6.15422 6.16870 6.19791 6.26730 6.44278 6.49154 6.57581 6.67405 6.80869 7.60506 7.98924 8.32182 8.41367 9.20602 9.92869 10.12975 11.40883 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014850 B = 0.005269 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.100560 B = 5312.788563 C = 6694.081895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.088 4.088 3 C -0.139 4.139 4 C -0.143 4.143 5 C 0.524 3.476 6 O -0.544 6.544 7 N -0.719 5.719 8 C 0.154 3.846 9 H 0.088 0.912 10 C -0.125 4.125 11 C -0.115 4.115 12 C -0.122 4.122 13 C -0.109 4.109 14 C -0.104 4.104 15 H 0.073 0.927 16 C 0.163 3.837 17 N -0.754 5.754 18 C -0.242 4.242 19 H 0.089 0.911 20 C 0.004 3.996 21 N -0.935 5.935 22 Si 0.883 3.117 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.278 1.278 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.401 0.599 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.027 0.973 45 H 0.027 0.973 46 H 0.360 0.640 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.086 15.231 7.774 20.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.091 4.091 3 C -0.197 4.197 4 C -0.200 4.200 5 C 0.310 3.690 6 O -0.421 6.421 7 N -0.369 5.369 8 C 0.049 3.951 9 H 0.106 0.894 10 C -0.164 4.164 11 C -0.153 4.153 12 C -0.159 4.159 13 C -0.147 4.147 14 C -0.124 4.124 15 H 0.092 0.908 16 C 0.036 3.964 17 N -0.400 5.400 18 C -0.372 4.372 19 H 0.107 0.893 20 C -0.191 4.191 21 N -0.583 5.583 22 Si 0.714 3.286 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.204 1.204 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.236 0.764 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.045 0.955 45 H 0.045 0.955 46 H 0.193 0.807 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.700 14.731 8.150 20.502 hybrid contribution 1.544 0.522 0.239 1.647 sum -10.156 15.254 8.389 20.154 Atomic orbital electron populations 1.21644 0.92162 1.02836 1.01710 1.20825 0.97897 0.96335 0.94029 1.21858 1.01314 0.93900 1.02624 1.21882 1.01739 1.00746 0.95637 1.20524 0.82243 0.79219 0.86975 1.90667 1.55405 1.48743 1.47323 1.46104 1.07022 1.58448 1.25362 1.20954 0.95390 0.94645 0.84075 0.89378 1.21888 1.01296 0.98332 0.94887 1.21481 0.96908 0.99938 0.96949 1.21602 0.96716 0.99128 0.98499 1.21518 1.02266 0.97735 0.93161 1.21653 0.94917 0.98974 0.96821 0.90831 1.20639 0.87896 0.94459 0.93406 1.42719 1.02269 1.54543 1.40494 1.19053 0.94176 1.16643 1.07367 0.89322 1.24660 0.96943 0.99227 0.98289 1.69706 1.20964 1.36173 1.31426 0.86568 0.83568 0.78657 0.79847 1.21056 1.21746 1.20397 0.92161 0.92200 0.91905 0.92066 0.91440 0.92246 0.91805 0.91482 0.91699 0.76440 0.91759 0.92007 0.91791 0.92136 0.92024 0.92121 0.91577 0.91000 0.95510 0.95550 0.80669 0.93083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.28 7.76 37.16 0.29 -1.00 16 2 C -0.09 -0.92 0.87 -155.66 -0.14 -1.05 16 3 C -0.14 -1.16 8.37 37.16 0.31 -0.85 16 4 C -0.14 -1.45 8.37 37.16 0.31 -1.14 16 5 C 0.52 7.04 6.45 -10.98 -0.07 6.97 16 6 O -0.54 -9.18 15.64 5.56 0.09 -9.09 16 7 N -0.72 -8.98 4.09 -53.81 -0.22 -9.20 16 8 C 0.15 2.06 1.90 -67.94 -0.13 1.93 16 9 H 0.09 1.36 7.58 -51.92 -0.39 0.97 16 10 C -0.13 -1.46 5.49 -26.73 -0.15 -1.61 16 11 C -0.11 -1.24 5.92 -26.73 -0.16 -1.40 16 12 C -0.12 -1.40 5.92 -26.73 -0.16 -1.56 16 13 C -0.11 -1.54 5.08 -26.71 -0.14 -1.67 16 14 C -0.10 -1.53 1.80 -90.60 -0.16 -1.69 16 15 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 16 C 0.16 3.09 5.57 -4.04 -0.02 3.06 16 17 N -0.75 -17.51 5.13 -59.91 -0.31 -17.82 16 18 C -0.24 -6.82 10.47 -15.06 -0.16 -6.98 16 19 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 20 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 21 N -0.93 -29.30 13.97 55.49 0.78 -28.53 16 22 Si 0.88 21.87 27.74 -169.99 -4.71 17.16 16 23 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 25 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 26 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 29 H 0.06 0.48 7.57 -51.93 -0.39 0.08 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.67 7.56 -51.93 -0.39 0.28 16 35 H 0.40 4.48 7.23 -40.82 -0.30 4.19 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 43 H 0.07 1.13 7.18 -51.93 -0.37 0.76 16 44 H 0.03 0.51 7.30 -51.93 -0.38 0.13 16 45 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.36 8.13 4.71 -40.82 -0.19 7.94 16 47 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 362.48 15.07 5.46 5.46 Total: -1.00 -32.36 362.48 -8.15 -40.51 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -8.77 Total: 8.45 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -0.46 Total: -6.95 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: 0.25 Total: -55.55 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.71 Total: 17.16 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.36 -8.15 -40.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754351666.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.452 kcal (2) G-P(sol) polarization free energy of solvation -32.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds