Wall clock time and date at job start Tue Mar 31 2020 05:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47256 * 2 1 4 4 C 1.52999 * 109.46858 * 240.00145 * 2 1 3 5 5 C 1.50701 * 109.47061 * 120.00070 * 2 1 3 6 6 O 1.21283 * 120.00052 * 359.97438 * 5 2 1 7 7 N 1.34770 * 119.99922 * 179.97438 * 5 2 1 8 8 C 1.46500 * 120.00256 * 180.02562 * 7 5 2 9 9 H 1.09001 * 109.46596 * 325.00243 * 8 7 5 10 10 C 1.53006 * 109.47249 * 84.99846 * 8 7 5 11 11 C 1.52999 * 109.46626 * 60.00049 * 10 8 7 12 12 C 1.52997 * 109.46991 * 60.00378 * 11 10 8 13 13 C 1.52996 * 109.47131 * 299.99311 * 12 11 10 14 14 C 1.52997 * 109.47473 * 205.00145 * 8 7 5 15 15 H 1.08996 * 109.46952 * 179.97438 * 14 8 7 16 16 C 1.52996 * 109.47131 * 59.99623 * 14 8 7 17 17 N 1.46495 * 109.47172 * 175.00143 * 16 14 8 18 18 C 1.36936 * 120.00085 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00357 * 359.97438 * 18 17 16 20 20 C 1.38812 * 120.00248 * 180.02562 * 18 17 16 21 21 N 1.31623 * 120.00145 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00469 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46762 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47523 * 119.99358 * 22 20 18 25 25 H 1.48500 * 109.47447 * 239.99938 * 22 20 18 26 26 H 1.09005 * 109.47250 * 300.00048 * 1 2 3 27 27 H 1.09004 * 109.47175 * 59.99795 * 1 2 3 28 28 H 1.08997 * 109.47643 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47027 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47080 * 300.00664 * 3 2 1 31 31 H 1.08999 * 109.46639 * 59.99947 * 3 2 1 32 32 H 1.09006 * 109.47048 * 300.00192 * 4 2 1 33 33 H 1.09004 * 109.47178 * 60.00063 * 4 2 1 34 34 H 1.09000 * 109.46920 * 180.02562 * 4 2 1 35 35 H 0.97005 * 120.00370 * 0.02562 * 7 5 2 36 36 H 1.08993 * 109.46955 * 180.02562 * 10 8 7 37 37 H 1.09000 * 109.47050 * 300.00351 * 10 8 7 38 38 H 1.09002 * 109.46719 * 180.02562 * 11 10 8 39 39 H 1.08993 * 109.47839 * 299.99931 * 11 10 8 40 40 H 1.09001 * 109.47289 * 179.97438 * 12 11 10 41 41 H 1.09000 * 109.47611 * 59.99933 * 12 11 10 42 42 H 1.08996 * 109.47452 * 300.00000 * 13 12 11 43 43 H 1.09000 * 109.47054 * 180.02562 * 13 12 11 44 44 H 1.09000 * 109.47315 * 295.00431 * 16 14 8 45 45 H 1.09007 * 109.46739 * 55.00050 * 16 14 8 46 46 H 0.97003 * 120.00137 * 359.97438 * 17 16 14 47 47 H 0.96997 * 120.00185 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2305 6 8 1.2442 -1.1710 2.0290 7 7 3.3574 -0.8340 1.4435 8 6 3.8458 -1.5251 2.6393 9 1 3.1733 -1.3263 3.4739 10 6 3.8967 -3.0310 2.3731 11 6 4.8405 -3.3100 1.2016 12 6 6.2432 -2.8051 1.5454 13 6 6.1922 -1.2993 1.8116 14 6 5.2485 -1.0202 2.9831 15 1 5.6116 -1.5341 3.8731 16 6 5.1975 0.4855 3.2493 17 7 6.5146 0.9477 3.6941 18 6 6.7112 2.2692 3.9941 19 1 5.8954 2.9710 3.9024 20 6 7.9593 2.7073 4.4151 21 7 8.9537 1.8522 4.5264 22 14 8.2277 4.5102 4.8236 23 1 6.9614 5.2581 4.6177 24 1 8.6542 4.6387 6.2402 25 1 9.2808 5.0672 3.9370 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.1300 1.4424 -0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6767 1.9562 0.8900 32 1 1.6765 -1.7489 -1.2493 33 1 1.6766 -0.2073 -2.1393 34 1 3.1300 -0.7216 -1.2491 35 1 3.9878 -0.4654 0.8050 36 1 4.2597 -3.5451 3.2630 37 1 2.8974 -3.3907 2.1282 38 1 4.8764 -4.3827 1.0116 39 1 4.4772 -2.7959 0.3119 40 1 6.9157 -3.0042 0.7110 41 1 6.6066 -3.3193 2.4351 42 1 5.8290 -0.7851 0.9219 43 1 7.1917 -0.9395 2.0561 44 1 4.9196 1.0073 2.3335 45 1 4.4590 0.6927 4.0239 46 1 7.2473 0.3174 3.7769 47 1 9.8258 2.1582 4.8210 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754351667.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:04 Heat of formation + Delta-G solvation = -63.340427 kcal Electronic energy + Delta-G solvation = -23898.516971 eV Core-core repulsion = 20693.936209 eV Total energy + Delta-G solvation = -3204.580762 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.51506 -38.49239 -35.59271 -34.64440 -33.51115 -31.90544 -29.85944 -29.39353 -27.49123 -27.20431 -25.25225 -23.47597 -22.91249 -21.99815 -20.65701 -19.52631 -18.86972 -17.25117 -16.71470 -15.79902 -15.38109 -14.93693 -14.71082 -14.35729 -14.25986 -13.98855 -13.65215 -13.37460 -13.21034 -13.04793 -12.74971 -12.49928 -12.34751 -12.12989 -12.03665 -11.85332 -11.83819 -11.63034 -11.39567 -11.07669 -11.04452 -10.89565 -10.88722 -10.71798 -10.33601 -10.17186 -9.96053 -9.83308 -9.62240 -9.50732 -8.89811 -8.77767 -6.91234 -5.76988 -3.05058 2.78297 3.31937 3.42787 3.48850 3.50775 4.54759 4.58057 4.65310 4.74882 4.86373 4.91891 4.95394 5.14134 5.28506 5.35975 5.40096 5.45555 5.57442 5.58503 5.62928 5.65344 5.67934 5.70326 5.73081 5.77564 5.79703 5.86427 5.94998 6.07553 6.11069 6.15906 6.17276 6.19258 6.25327 6.30066 6.40411 6.50101 6.67034 6.69210 6.82487 6.90128 7.67345 7.70858 8.38033 8.42222 9.53600 10.11598 10.46437 11.45993 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016348 B = 0.004859 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.296715 B = 5761.507413 C = 6841.193311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.088 4.088 3 C -0.142 4.142 4 C -0.139 4.139 5 C 0.522 3.478 6 O -0.546 6.546 7 N -0.713 5.713 8 C 0.154 3.846 9 H 0.086 0.914 10 C -0.127 4.127 11 C -0.115 4.115 12 C -0.121 4.121 13 C -0.110 4.110 14 C -0.102 4.102 15 H 0.084 0.916 16 C 0.161 3.839 17 N -0.731 5.731 18 C -0.237 4.237 19 H 0.069 0.931 20 C -0.014 4.014 21 N -0.934 5.934 22 Si 0.905 3.095 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.400 0.600 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.053 0.947 43 H 0.078 0.922 44 H 0.018 0.982 45 H 0.017 0.983 46 H 0.384 0.616 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.092 -8.738 -12.114 19.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.091 4.091 3 C -0.200 4.200 4 C -0.197 4.197 5 C 0.308 3.692 6 O -0.423 6.423 7 N -0.364 5.364 8 C 0.049 3.951 9 H 0.104 0.896 10 C -0.166 4.166 11 C -0.152 4.152 12 C -0.158 4.158 13 C -0.147 4.147 14 C -0.121 4.121 15 H 0.103 0.897 16 C 0.033 3.967 17 N -0.375 5.375 18 C -0.368 4.368 19 H 0.087 0.913 20 C -0.210 4.210 21 N -0.583 5.583 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.236 0.764 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.097 0.903 44 H 0.036 0.964 45 H 0.035 0.965 46 H 0.218 0.782 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.681 -8.887 -11.501 19.289 hybrid contribution 0.847 1.012 0.027 1.320 sum -11.834 -7.876 -11.474 18.268 Atomic orbital electron populations 1.21640 0.92197 1.02576 1.01907 1.20818 0.97872 0.96608 0.93805 1.21877 1.01631 0.93604 1.02853 1.21859 1.01277 1.00431 0.96125 1.20501 0.82381 0.79168 0.87113 1.90665 1.55464 1.49176 1.47038 1.46125 1.06786 1.57995 1.25538 1.20943 0.95479 0.90969 0.87719 0.89587 1.21891 0.99701 0.95947 0.99065 1.21483 0.95420 1.00145 0.98199 1.21583 0.96276 0.96631 1.01329 1.21521 1.00969 0.94843 0.97396 1.21622 0.93180 0.98152 0.99137 0.89739 1.20631 0.89389 0.90157 0.96514 1.42377 1.07154 1.07470 1.80536 1.19263 0.95255 0.85395 1.36901 0.91281 1.24716 0.96029 0.97698 1.02520 1.69664 1.01668 1.33041 1.53879 0.86141 0.77557 0.84964 0.77688 1.20607 1.21881 1.21900 0.91945 0.92267 0.92129 0.91824 0.91531 0.91856 0.92190 0.91484 0.92118 0.76417 0.91136 0.91855 0.92565 0.92327 0.92308 0.91919 0.92799 0.90298 0.96443 0.96520 0.78227 0.93607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.28 7.76 37.16 0.29 -1.00 16 2 C -0.09 -0.92 0.87 -155.66 -0.14 -1.06 16 3 C -0.14 -1.42 8.37 37.16 0.31 -1.11 16 4 C -0.14 -1.17 8.37 37.16 0.31 -0.86 16 5 C 0.52 7.13 6.45 -10.99 -0.07 7.06 16 6 O -0.55 -9.35 15.64 5.55 0.09 -9.27 16 7 N -0.71 -9.13 3.40 -53.80 -0.18 -9.31 16 8 C 0.15 2.15 2.23 -67.93 -0.15 1.99 16 9 H 0.09 1.37 7.58 -51.93 -0.39 0.98 16 10 C -0.13 -1.56 5.60 -26.73 -0.15 -1.71 16 11 C -0.11 -1.26 5.77 -26.73 -0.15 -1.41 16 12 C -0.12 -1.44 5.92 -26.73 -0.16 -1.60 16 13 C -0.11 -1.57 4.90 -26.73 -0.13 -1.70 16 14 C -0.10 -1.58 2.02 -90.62 -0.18 -1.76 16 15 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 16 C 0.16 3.18 5.42 -4.05 -0.02 3.16 16 17 N -0.73 -18.12 5.33 -59.91 -0.32 -18.44 16 18 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 19 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 20 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 21 N -0.93 -27.98 13.06 55.49 0.72 -27.25 16 22 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 26 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 29 H 0.06 0.64 7.57 -51.93 -0.39 0.25 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.48 7.56 -51.93 -0.39 0.09 16 35 H 0.40 4.70 5.50 -40.82 -0.22 4.48 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.63 7.60 -51.93 -0.39 0.23 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.05 0.73 6.51 -51.93 -0.34 0.39 16 43 H 0.08 1.35 7.18 -51.93 -0.37 0.98 16 44 H 0.02 0.35 7.61 -51.93 -0.40 -0.05 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.38 9.93 6.85 -40.82 -0.28 9.65 16 47 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 361.48 15.07 5.45 5.45 Total: -1.00 -31.32 361.48 -8.40 -39.72 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -8.64 Total: 8.98 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -0.49 Total: -7.25 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: 0.22 Total: -55.00 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.09 Total: -9.27 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.32 -8.40 -39.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754351667.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.619 kcal (2) G-P(sol) polarization free energy of solvation -31.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds