Wall clock time and date at job start Tue Mar 31 2020 05:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47073 * 2 1 4 4 C 1.53000 * 109.46660 * 239.99890 * 2 1 3 5 5 C 1.50703 * 109.47014 * 120.00125 * 2 1 3 6 6 O 1.21277 * 119.99605 * 0.02562 * 5 2 1 7 7 N 1.34773 * 119.99847 * 179.97438 * 5 2 1 8 8 C 1.46496 * 119.99909 * 180.02562 * 7 5 2 9 9 H 1.09001 * 109.47459 * 35.00135 * 8 7 5 10 10 C 1.53006 * 109.46995 * 275.00159 * 8 7 5 11 11 C 1.52999 * 109.46626 * 299.99666 * 10 8 7 12 12 C 1.52997 * 109.47592 * 300.00035 * 11 10 8 13 13 C 1.52996 * 109.47165 * 60.00300 * 12 11 10 14 14 C 1.52997 * 109.47194 * 155.00140 * 8 7 5 15 15 H 1.09000 * 109.47140 * 179.97438 * 14 8 7 16 16 C 1.52996 * 109.46975 * 299.99578 * 14 8 7 17 17 N 1.46499 * 109.47278 * 185.00131 * 16 14 8 18 18 C 1.36933 * 120.00445 * 180.02562 * 17 16 14 19 19 H 1.08003 * 119.99818 * 359.97438 * 18 17 16 20 20 C 1.38815 * 120.00224 * 180.02562 * 18 17 16 21 21 N 1.31620 * 119.99714 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00041 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.46997 * 90.00197 * 22 20 18 24 24 H 1.48501 * 109.47146 * 210.00318 * 22 20 18 25 25 H 1.48505 * 109.46995 * 330.00038 * 22 20 18 26 26 H 1.09003 * 109.47294 * 300.00168 * 1 2 3 27 27 H 1.09000 * 109.47041 * 59.99796 * 1 2 3 28 28 H 1.09002 * 109.47469 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46949 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46943 * 299.99714 * 3 2 1 31 31 H 1.08992 * 109.46920 * 60.00190 * 3 2 1 32 32 H 1.09004 * 109.47341 * 299.99705 * 4 2 1 33 33 H 1.09000 * 109.47137 * 60.00373 * 4 2 1 34 34 H 1.09002 * 109.46918 * 179.97438 * 4 2 1 35 35 H 0.97003 * 120.00265 * 359.97438 * 7 5 2 36 36 H 1.08993 * 109.46955 * 60.00138 * 10 8 7 37 37 H 1.09000 * 109.47050 * 179.97438 * 10 8 7 38 38 H 1.09000 * 109.47160 * 60.00369 * 11 10 8 39 39 H 1.09002 * 109.46719 * 180.02562 * 11 10 8 40 40 H 1.09000 * 109.47140 * 300.00346 * 12 11 10 41 41 H 1.09001 * 109.47375 * 180.02562 * 12 11 10 42 42 H 1.08992 * 109.47534 * 180.02562 * 13 12 11 43 43 H 1.08996 * 109.47134 * 59.99508 * 13 12 11 44 44 H 1.08998 * 109.47622 * 304.99846 * 16 14 8 45 45 H 1.09001 * 109.47244 * 65.00543 * 16 14 8 46 46 H 0.97001 * 120.00036 * 0.02562 * 17 16 14 47 47 H 0.97003 * 119.99755 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2305 6 8 1.2442 -1.1717 2.0285 7 7 3.3574 -0.8340 1.4435 8 6 3.8457 -1.5251 2.6393 9 1 3.1730 -2.3471 2.8842 10 6 3.8976 -0.5424 3.8109 11 6 4.8420 0.6113 3.4672 12 6 6.2443 0.0605 3.2010 13 6 6.1924 -0.9222 2.0295 14 6 5.2480 -2.0759 2.3732 15 1 5.6115 -2.5897 3.2631 16 6 5.1961 -3.0587 1.2017 17 7 6.5127 -3.6757 1.0231 18 6 6.7088 -4.5951 0.0274 19 1 5.8925 -4.8656 -0.6260 20 6 7.9562 -5.1801 -0.1415 21 7 8.1447 -6.0634 -1.0989 22 14 9.3678 -4.7126 0.9892 23 1 9.3787 -5.6168 2.1671 24 1 10.6526 -4.8399 0.2555 25 1 9.1942 -3.3095 1.4436 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9562 0.8899 32 1 1.6766 -1.7490 -1.2492 33 1 1.6766 -0.2074 -2.1392 34 1 3.1299 -0.7209 -1.2495 35 1 3.9878 -0.4660 0.8046 36 1 2.8985 -0.1500 4.0005 37 1 4.2605 -1.0567 4.7007 38 1 4.4787 1.1255 2.5774 39 1 4.8793 1.3112 4.3019 40 1 6.6077 -0.4537 4.0908 41 1 6.9172 0.8825 2.9566 42 1 7.1913 -1.3150 1.8402 43 1 5.8290 -0.4081 1.1398 44 1 4.4573 -3.8328 1.4093 45 1 4.9183 -2.5258 0.2924 46 1 7.2458 -3.4330 1.6102 47 1 9.0163 -6.4724 -1.2167 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754351668.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:08 Heat of formation + Delta-G solvation = -59.031815 kcal Electronic energy + Delta-G solvation = -23970.830126 eV Core-core repulsion = 20766.436199 eV Total energy + Delta-G solvation = -3204.393927 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.58267 -38.59205 -35.62314 -34.84480 -33.59176 -31.96949 -30.11185 -29.74083 -27.50322 -27.22190 -25.51011 -23.54520 -22.64028 -22.04920 -20.72724 -19.62229 -18.96303 -17.66488 -16.83042 -15.88073 -15.42547 -15.04292 -14.71304 -14.43869 -14.24496 -14.04932 -13.87664 -13.54602 -13.31260 -12.93146 -12.79467 -12.52381 -12.36257 -12.30047 -12.15464 -11.97102 -11.84940 -11.75672 -11.58575 -11.11288 -11.08981 -11.04794 -10.99582 -10.80749 -10.48038 -10.25846 -10.02283 -9.93818 -9.58064 -9.55127 -8.93575 -8.83928 -7.23302 -5.77495 -3.12786 2.74492 3.26433 3.34869 3.38074 3.43750 4.52287 4.57828 4.62256 4.71675 4.72725 4.80010 4.84309 5.08877 5.14546 5.23541 5.38503 5.43883 5.50130 5.50918 5.54893 5.57520 5.58075 5.65759 5.66958 5.70791 5.73950 5.79187 5.80323 5.92798 5.99398 6.07959 6.10257 6.10430 6.16601 6.17577 6.26601 6.37411 6.48159 6.59626 6.70067 6.77671 7.61739 7.99081 8.33493 8.41548 9.20783 9.93044 10.13076 11.41083 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017787 B = 0.005037 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.765547 B = 5557.689606 C = 6488.774437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.088 4.088 3 C -0.139 4.139 4 C -0.142 4.142 5 C 0.523 3.477 6 O -0.545 6.545 7 N -0.714 5.714 8 C 0.155 3.845 9 H 0.088 0.912 10 C -0.128 4.128 11 C -0.115 4.115 12 C -0.121 4.121 13 C -0.112 4.112 14 C -0.106 4.106 15 H 0.084 0.916 16 C 0.165 3.835 17 N -0.754 5.754 18 C -0.243 4.243 19 H 0.089 0.911 20 C 0.004 3.996 21 N -0.935 5.935 22 Si 0.884 3.116 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.277 1.277 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.400 0.600 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.072 0.928 43 H 0.058 0.942 44 H 0.026 0.974 45 H 0.026 0.974 46 H 0.360 0.640 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.476 17.790 5.604 21.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.091 4.091 3 C -0.197 4.197 4 C -0.200 4.200 5 C 0.309 3.691 6 O -0.422 6.422 7 N -0.366 5.366 8 C 0.050 3.950 9 H 0.106 0.894 10 C -0.166 4.166 11 C -0.153 4.153 12 C -0.159 4.159 13 C -0.150 4.150 14 C -0.125 4.125 15 H 0.102 0.898 16 C 0.038 3.962 17 N -0.400 5.400 18 C -0.373 4.373 19 H 0.107 0.893 20 C -0.191 4.191 21 N -0.583 5.583 22 Si 0.715 3.285 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.204 1.204 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.236 0.764 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.076 0.924 44 H 0.044 0.956 45 H 0.044 0.956 46 H 0.193 0.807 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.077 17.294 5.983 21.391 hybrid contribution 1.505 0.334 0.402 1.593 sum -9.573 17.628 6.385 21.051 Atomic orbital electron populations 1.21643 0.92157 1.02842 1.01700 1.20821 0.97908 0.96305 0.94055 1.21857 1.01229 0.93952 1.02644 1.21883 1.01623 1.00803 0.95690 1.20512 0.82310 0.79274 0.86961 1.90667 1.55432 1.48771 1.47326 1.46117 1.06867 1.58352 1.25270 1.20910 0.95199 0.94474 0.84445 0.89372 1.21896 0.99821 0.96971 0.97948 1.21482 0.95221 0.97461 1.01095 1.21588 0.96556 0.98772 0.98954 1.21554 1.00530 0.95561 0.97359 1.21681 0.93611 0.96569 1.00685 0.89770 1.20613 0.88528 0.92974 0.94128 1.42717 1.07598 1.50656 1.39058 1.19055 0.97097 1.13964 1.07149 0.89324 1.24666 0.97277 0.98858 0.98343 1.69705 1.23230 1.31567 1.33769 0.86558 0.83109 0.78050 0.80828 1.21107 1.21760 1.20365 0.92148 0.92233 0.91897 0.92160 0.91451 0.92208 0.91763 0.91485 0.91832 0.76409 0.91688 0.91152 0.92178 0.92464 0.91987 0.92225 0.90924 0.92350 0.95580 0.95614 0.80660 0.93082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.27 7.76 37.16 0.29 -0.98 16 2 C -0.09 -0.90 0.87 -155.66 -0.14 -1.04 16 3 C -0.14 -1.13 8.37 37.16 0.31 -0.82 16 4 C -0.14 -1.41 8.37 37.16 0.31 -1.10 16 5 C 0.52 6.92 6.45 -10.99 -0.07 6.85 16 6 O -0.54 -9.11 15.64 5.56 0.09 -9.02 16 7 N -0.71 -8.72 3.40 -53.81 -0.18 -8.90 16 8 C 0.15 2.03 2.23 -67.93 -0.15 1.88 16 9 H 0.09 1.33 7.58 -51.93 -0.39 0.94 16 10 C -0.13 -1.46 5.60 -26.73 -0.15 -1.61 16 11 C -0.11 -1.17 5.76 -26.73 -0.15 -1.32 16 12 C -0.12 -1.32 5.92 -26.73 -0.16 -1.48 16 13 C -0.11 -1.49 4.91 -26.73 -0.13 -1.62 16 14 C -0.11 -1.54 2.02 -90.62 -0.18 -1.72 16 15 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 16 C 0.16 3.10 5.42 -4.04 -0.02 3.08 16 17 N -0.75 -17.53 5.13 -59.91 -0.31 -17.84 16 18 C -0.24 -6.84 10.47 -15.06 -0.16 -7.00 16 19 H 0.09 2.70 8.06 -52.48 -0.42 2.27 16 20 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 21 N -0.93 -29.35 13.97 55.49 0.78 -28.58 16 22 Si 0.88 21.92 27.74 -169.99 -4.71 17.20 16 23 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 25 H -0.28 -6.37 6.52 56.52 0.37 -6.01 16 26 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 29 H 0.06 0.46 7.57 -51.93 -0.39 0.07 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.64 7.56 -51.93 -0.39 0.24 16 35 H 0.40 4.44 5.50 -40.82 -0.22 4.21 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.60 7.60 -51.93 -0.39 0.20 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 1.12 7.18 -51.93 -0.37 0.75 16 43 H 0.06 0.72 6.50 -51.93 -0.34 0.39 16 44 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.03 0.49 7.61 -51.93 -0.40 0.09 16 46 H 0.36 8.13 4.71 -40.82 -0.19 7.94 16 47 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 358.36 15.07 5.40 5.40 Total: -1.00 -32.33 358.36 -8.04 -40.37 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -8.60 Total: 8.21 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -0.50 Total: -6.85 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: 0.28 Total: -55.32 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.09 Total: -9.02 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.71 Total: 17.20 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.33 -8.04 -40.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754351668.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.659 kcal (2) G-P(sol) polarization free energy of solvation -32.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds