Wall clock time and date at job start Tue Mar 31 2020 05:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47209 * 2 1 4 4 C 1.52990 * 109.47545 * 120.00521 * 2 1 3 5 5 C 1.53003 * 109.47383 * 174.99787 * 4 2 1 6 6 H 1.09002 * 115.54973 * 29.41636 * 5 4 2 7 7 C 1.53005 * 117.49874 * 243.74600 * 5 4 2 8 8 C 1.52999 * 59.99973 * 252.48565 * 7 5 4 9 9 H 1.08995 * 117.49529 * 107.48826 * 8 7 5 10 10 C 1.50693 * 117.50064 * 252.51042 * 8 7 5 11 11 O 1.21290 * 120.00028 * 68.62195 * 10 8 7 12 12 N 1.34778 * 120.00264 * 248.62816 * 10 8 7 13 13 C 1.46497 * 119.99841 * 359.97438 * 12 10 8 14 14 C 1.46504 * 120.00338 * 179.97438 * 12 10 8 15 15 C 1.53002 * 109.47093 * 89.99608 * 14 12 10 16 16 C 1.52995 * 109.47133 * 180.02562 * 15 14 12 17 17 N 1.46499 * 109.47048 * 179.97438 * 16 15 14 18 18 C 1.36938 * 119.99637 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00594 * 359.97438 * 18 17 16 20 20 C 1.38815 * 120.00032 * 179.97438 * 18 17 16 21 21 N 1.31619 * 119.99873 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00278 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46945 * 90.00176 * 22 20 18 24 24 H 1.48500 * 109.47319 * 210.00177 * 22 20 18 25 25 H 1.48498 * 109.46934 * 330.00112 * 22 20 18 26 26 H 1.09005 * 109.46413 * 299.99546 * 1 2 3 27 27 H 1.08994 * 109.47357 * 59.99121 * 1 2 3 28 28 H 1.08992 * 109.47256 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47046 * 240.00820 * 2 1 3 30 30 H 1.09002 * 109.47332 * 300.00685 * 3 2 1 31 31 H 1.09000 * 109.46958 * 60.00401 * 3 2 1 32 32 H 1.09000 * 109.47309 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47451 * 54.99579 * 4 2 1 34 34 H 1.09000 * 109.47146 * 294.99931 * 4 2 1 35 35 H 1.09004 * 117.49602 * 359.97438 * 7 5 4 36 36 H 1.09004 * 117.49357 * 144.97247 * 7 5 4 37 37 H 1.09006 * 109.47168 * 90.00437 * 13 12 10 38 38 H 1.09000 * 109.47539 * 210.00208 * 13 12 10 39 39 H 1.09007 * 109.47063 * 330.00531 * 13 12 10 40 40 H 1.08991 * 109.46984 * 209.99439 * 14 12 10 41 41 H 1.08998 * 109.46783 * 329.99610 * 14 12 10 42 42 H 1.09004 * 109.46946 * 300.00157 * 15 14 12 43 43 H 1.08994 * 109.47039 * 59.99880 * 15 14 12 44 44 H 1.08998 * 109.46995 * 300.00237 * 16 15 14 45 45 H 1.09006 * 109.46925 * 60.00221 * 16 15 14 46 46 H 0.96995 * 120.00392 * 359.97438 * 17 16 15 47 47 H 0.97000 * 120.00294 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.8311 1.1877 6 1 4.0721 -0.0345 0.6434 7 6 4.1697 -2.2345 1.1121 8 6 4.2806 -1.4223 2.4039 9 1 3.6651 -1.7331 3.2481 10 6 5.6327 -0.8587 2.7576 11 8 6.1135 0.0301 2.0869 12 7 6.3078 -1.3424 3.8191 13 6 5.7269 -2.4157 4.6294 14 6 7.6225 -0.7949 4.1626 15 6 7.4497 0.3775 5.1304 16 6 8.8227 0.9497 5.4886 17 7 8.6572 2.0726 6.4148 18 6 9.7560 2.7468 6.8766 19 1 10.7446 2.4505 6.5585 20 6 9.5992 3.8112 7.7538 21 7 8.3945 4.1721 8.1420 22 14 11.0981 4.7304 8.3845 23 1 11.4110 5.8554 7.4670 24 1 10.8176 5.2624 9.7422 25 1 12.2573 3.8043 8.4454 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8898 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5137 -0.8901 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6055 -1.7199 1.2950 34 1 1.7518 -0.1585 2.1369 35 1 3.4812 -3.0796 1.1064 36 1 5.0745 -2.3612 0.5176 37 1 6.0321 -3.3814 4.2261 38 1 6.0767 -2.3246 5.6578 39 1 4.6397 -2.3399 4.6073 40 1 8.2267 -1.5696 4.6346 41 1 8.1196 -0.4480 3.2566 42 1 6.8455 1.1522 4.6583 43 1 6.9527 0.0306 6.0362 44 1 9.4273 0.1751 5.9604 45 1 9.3193 1.2968 4.5824 46 1 7.7693 2.3391 6.7003 47 1 8.2849 4.9156 8.7553 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754396685.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:18 Heat of formation + Delta-G solvation = -22.835374 kcal Electronic energy + Delta-G solvation = -21935.643650 eV Core-core repulsion = 18732.819318 eV Total energy + Delta-G solvation = -3202.824331 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.25364 -37.96872 -36.12561 -35.15700 -34.75541 -32.19884 -29.87617 -27.91497 -27.37695 -26.90358 -25.75839 -23.76407 -22.31627 -21.43750 -20.81228 -20.07635 -18.92631 -17.38550 -17.00316 -16.23948 -15.58672 -15.36934 -14.79676 -14.57841 -14.36245 -14.26086 -13.83530 -13.33273 -13.21753 -13.08994 -12.90658 -12.85032 -12.58010 -12.37784 -12.23653 -11.91525 -11.89514 -11.77511 -11.31051 -11.06044 -10.88998 -10.83433 -10.81697 -10.70603 -10.41686 -10.36470 -10.15869 -10.04733 -9.72974 -9.63554 -8.82351 -8.61868 -6.86940 -5.71551 -3.00147 2.48492 2.95829 3.47181 3.51643 3.53624 3.63705 4.22678 4.48319 4.52555 4.63876 4.68348 4.78577 4.81751 4.91360 5.08363 5.15039 5.21376 5.27580 5.37426 5.43569 5.45306 5.49239 5.50778 5.56360 5.58152 5.61264 5.66924 5.73125 5.74458 5.78176 5.92467 5.97375 5.99863 6.13437 6.14876 6.23334 6.34741 6.43635 6.58881 6.91210 6.93826 7.38839 7.74342 8.22001 8.47469 9.58141 10.17115 10.51831 11.51639 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020477 B = 0.002732 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.037675 B =10246.926694 C =11124.961352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.152 4.152 4 C -0.085 4.085 5 C -0.119 4.119 6 H 0.121 0.879 7 C -0.149 4.149 8 C -0.190 4.190 9 H 0.123 0.877 10 C 0.540 3.460 11 O -0.535 6.535 12 N -0.612 5.612 13 C 0.079 3.921 14 C 0.119 3.881 15 C -0.139 4.139 16 C 0.157 3.843 17 N -0.734 5.734 18 C -0.238 4.238 19 H 0.071 0.929 20 C -0.017 4.017 21 N -0.935 5.935 22 Si 0.908 3.092 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.055 0.945 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.018 0.982 45 H 0.020 0.980 46 H 0.383 0.617 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.433 -17.073 -14.887 27.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.210 4.210 4 C -0.123 4.123 5 C -0.137 4.137 6 H 0.139 0.861 7 C -0.187 4.187 8 C -0.211 4.211 9 H 0.141 0.859 10 C 0.328 3.672 11 O -0.412 6.412 12 N -0.345 5.345 13 C -0.064 4.064 14 C -0.004 4.004 15 C -0.177 4.177 16 C 0.028 3.972 17 N -0.378 5.378 18 C -0.369 4.369 19 H 0.089 0.911 20 C -0.212 4.212 21 N -0.584 5.584 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.208 1.208 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.036 0.964 45 H 0.038 0.962 46 H 0.217 0.783 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -14.987 -16.562 -15.194 27.015 hybrid contribution 0.514 0.565 0.776 1.089 sum -14.474 -15.998 -14.418 25.948 Atomic orbital electron populations 1.21847 0.95296 1.01523 1.01852 1.21063 0.95399 0.96604 0.98131 1.21923 1.01743 0.95620 1.01666 1.21284 0.91956 1.00596 0.98433 1.22528 0.95109 0.97265 0.98824 0.86132 1.23076 1.03330 0.95033 0.97213 1.22343 0.96748 1.07591 0.94402 0.85919 1.19663 0.85600 0.81996 0.79947 1.90714 1.69107 1.30001 1.51384 1.47814 1.20038 1.37665 1.28982 1.21814 0.99041 0.89636 0.95954 1.21495 0.82815 0.96167 0.99891 1.22051 0.99688 0.97409 0.98594 1.20541 0.93136 0.90401 0.93091 1.42358 1.06973 1.35049 1.53384 1.19256 0.87462 1.09329 1.20863 0.91145 1.24761 0.96599 0.99323 1.00540 1.69669 1.20114 1.30553 1.38041 0.86163 0.82012 0.79886 0.77994 1.21706 1.21780 1.20762 0.92641 0.92715 0.92844 0.91116 0.92908 0.92594 0.92012 0.91699 0.91262 0.87979 0.88444 0.92644 0.90722 0.91099 0.90523 0.89835 0.91610 0.92037 0.96406 0.96226 0.78328 0.93550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.19 37.16 0.34 -0.61 16 2 C -0.09 -0.70 2.92 -90.62 -0.26 -0.96 16 3 C -0.15 -1.31 9.01 37.16 0.33 -0.97 16 4 C -0.09 -0.66 4.96 -26.73 -0.13 -0.79 16 5 C -0.12 -1.14 5.04 -90.62 -0.46 -1.60 16 6 H 0.12 1.42 5.91 -51.93 -0.31 1.11 16 7 C -0.15 -1.24 9.88 -26.73 -0.26 -1.50 16 8 C -0.19 -1.92 5.01 -91.77 -0.46 -2.38 16 9 H 0.12 1.00 6.44 -51.93 -0.33 0.67 16 10 C 0.54 7.63 7.46 -10.99 -0.08 7.55 16 11 O -0.54 -9.78 15.84 5.55 0.09 -9.69 16 12 N -0.61 -7.81 2.87 -181.57 -0.52 -8.33 16 13 C 0.08 0.68 10.26 59.85 0.61 1.30 16 14 C 0.12 1.71 5.41 -4.04 -0.02 1.69 16 15 C -0.14 -2.46 5.65 -26.73 -0.15 -2.61 16 16 C 0.16 3.36 6.26 -4.05 -0.03 3.33 16 17 N -0.73 -19.83 5.60 -59.91 -0.34 -20.16 16 18 C -0.24 -6.98 9.99 -15.06 -0.15 -7.13 16 19 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 20 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 21 N -0.93 -29.33 13.06 55.49 0.72 -28.60 16 22 Si 0.91 23.09 29.55 -169.99 -5.02 18.07 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 24 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 25 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.60 6.41 -51.93 -0.33 0.27 16 33 H 0.06 0.42 7.88 -51.93 -0.41 0.01 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.10 0.62 8.03 -51.93 -0.42 0.21 16 36 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.63 8.07 -51.93 -0.42 0.21 16 39 H 0.07 0.50 6.00 -51.92 -0.31 0.19 16 40 H 0.08 0.94 8.07 -51.93 -0.42 0.52 16 41 H 0.08 1.32 7.42 -51.93 -0.39 0.94 16 42 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.38 10.87 7.67 -40.82 -0.31 10.56 16 47 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 378.66 15.07 5.71 5.71 Total: -1.00 -34.33 378.66 -8.87 -43.19 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -8.69 Total: 5.11 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -0.81 Total: -5.28 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: -0.13 Total: -57.10 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.09 Total: -9.69 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.02 Total: 18.07 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.33 -8.87 -43.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754396685.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.356 kcal (2) G-P(sol) polarization free energy of solvation -34.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds