Wall clock time and date at job start Tue Mar 31 2020 06:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46960 * 2 1 4 4 C 1.53004 * 109.46671 * 186.03968 * 3 2 1 5 5 H 1.08998 * 109.47257 * 53.53655 * 4 3 2 6 6 C 1.50696 * 109.46812 * 173.53308 * 4 3 2 7 7 O 1.21280 * 120.00152 * 12.73089 * 6 4 3 8 8 N 1.34783 * 120.00097 * 192.72853 * 6 4 3 9 9 C 1.46504 * 119.99567 * 354.52759 * 8 6 4 10 10 C 1.46496 * 120.00198 * 174.52809 * 8 6 4 11 11 C 1.53494 * 114.20884 * 239.99949 * 10 8 6 12 12 N 1.47060 * 87.98610 * 220.14738 * 11 10 8 13 13 C 1.36939 * 136.05562 * 207.07883 * 12 11 10 14 14 H 1.07993 * 120.00386 * 5.39941 * 13 12 11 15 15 C 1.38813 * 119.99590 * 185.39495 * 13 12 11 16 16 N 1.31620 * 120.00408 * 5.34037 * 15 13 12 17 17 Si 1.86807 * 119.99492 * 185.33861 * 15 13 12 18 18 H 1.48493 * 109.47064 * 265.00198 * 17 15 13 19 19 H 1.48496 * 109.47393 * 25.00671 * 17 15 13 20 20 H 1.48503 * 109.46851 * 145.00575 * 17 15 13 21 21 C 1.47065 * 87.88767 * 27.34205 * 12 11 10 22 22 C 1.53002 * 109.47190 * 293.53376 * 4 3 2 23 23 C 1.52998 * 109.47093 * 323.73304 * 22 4 3 24 24 C 1.52993 * 109.47043 * 83.73421 * 22 4 3 25 25 H 1.08995 * 109.47110 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47243 * 300.00208 * 1 2 3 27 27 H 1.08998 * 109.47347 * 59.99642 * 1 2 3 28 28 H 1.08996 * 109.46869 * 239.99907 * 2 1 3 29 29 H 1.08995 * 109.46899 * 120.00110 * 2 1 3 30 30 H 1.08996 * 109.46707 * 66.04446 * 3 2 1 31 31 H 1.08990 * 109.47202 * 306.03732 * 3 2 1 32 32 H 1.08998 * 109.47205 * 274.08508 * 9 8 6 33 33 H 1.08996 * 109.47116 * 34.08680 * 9 8 6 34 34 H 1.08999 * 109.46634 * 154.08476 * 9 8 6 35 35 H 1.09002 * 113.27880 * 13.06984 * 10 8 6 36 36 H 1.09005 * 113.46721 * 105.36374 * 11 10 8 37 37 H 1.08997 * 113.46551 * 334.93315 * 11 10 8 38 38 H 0.96997 * 119.99874 * 179.97438 * 16 15 13 39 39 H 1.09000 * 113.46694 * 87.43184 * 21 12 11 40 40 H 1.08998 * 113.47061 * 217.87744 * 21 12 11 41 41 H 1.08999 * 109.46822 * 203.73597 * 22 4 3 42 42 H 1.09004 * 109.47196 * 185.80618 * 23 22 4 43 43 H 1.08997 * 109.47287 * 305.80689 * 23 22 4 44 44 H 1.09000 * 109.47122 * 65.80544 * 23 22 4 45 45 H 1.08993 * 109.47375 * 68.21988 * 24 22 4 46 46 H 1.09002 * 109.46940 * 188.21669 * 24 22 4 47 47 H 1.09001 * 109.47494 * 308.21134 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5625 1.4451 -0.1518 5 1 3.8410 0.8644 -1.0311 6 6 4.0489 2.8625 -0.3112 7 8 3.3032 3.7896 -0.0763 8 7 5.3128 3.0999 -0.7149 9 6 6.2494 1.9859 -0.8831 10 6 5.7499 4.4717 -0.9855 11 6 6.2280 4.7076 -2.4249 12 7 7.3049 5.5445 -1.8749 13 6 8.0566 6.6003 -2.3170 14 1 7.8408 7.0540 -3.2729 15 6 9.0958 7.0875 -1.5362 16 7 9.4267 6.4706 -0.4216 17 14 10.0247 8.6187 -2.0675 18 1 11.2444 8.2228 -2.8163 19 1 9.1550 9.4473 -2.9406 20 1 10.4131 9.4032 -0.8680 21 6 7.2240 4.7442 -0.6437 22 6 4.2001 0.8240 1.0926 23 6 3.3918 1.2178 2.3305 24 6 4.2106 -0.6996 0.9538 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.7677 1.9241 0.9391 31 1 1.5911 1.9866 -0.8309 32 1 6.7228 1.7619 0.0728 33 1 5.7094 1.1073 -1.2358 34 1 7.0127 2.2599 -1.6113 35 1 5.0552 5.2260 -0.6159 36 1 5.5145 5.2630 -3.0337 37 1 6.5883 3.8038 -2.9161 38 1 10.1531 6.8109 0.1237 39 1 7.8470 3.8501 -0.6655 40 1 7.3592 5.3308 0.2650 41 1 5.2229 1.1865 1.1961 42 1 3.9021 0.8626 3.2258 43 1 3.2971 2.3029 2.3725 44 1 2.4002 0.7685 2.2750 45 1 4.9025 -0.9876 0.1624 46 1 4.5283 -1.1480 1.8951 47 1 3.2084 -1.0487 0.7051 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754582853.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:35 Heat of formation + Delta-G solvation = 15.168357 kcal Electronic energy + Delta-G solvation = -23542.031692 eV Core-core repulsion = 20340.855327 eV Total energy + Delta-G solvation = -3201.176366 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.38969 -38.37215 -36.86803 -34.54131 -33.26150 -32.00529 -29.61345 -27.82686 -27.34461 -26.62322 -25.41767 -24.60053 -23.08091 -21.31284 -20.61769 -19.10854 -18.44693 -17.03274 -16.56161 -16.36169 -15.95499 -14.98280 -14.81131 -14.51893 -13.93373 -13.84033 -13.73084 -13.41296 -13.06268 -12.75229 -12.65460 -12.50027 -12.17430 -12.10608 -11.88697 -11.72054 -11.59484 -11.51133 -11.26029 -11.14324 -11.04433 -10.95015 -10.92611 -10.75409 -10.55502 -10.17969 -10.11755 -10.00364 -9.45326 -9.26838 -8.81787 -8.05801 -6.93344 -5.82328 -3.13897 2.92294 3.30567 3.39012 3.43730 3.45775 4.44358 4.57075 4.60143 4.71809 4.89600 4.96822 5.06996 5.08929 5.27322 5.31591 5.39237 5.41502 5.46719 5.50081 5.53972 5.57010 5.66960 5.69577 5.76005 5.78958 5.83891 5.86494 5.91422 5.96713 6.03040 6.08597 6.13500 6.19030 6.22112 6.34790 6.41317 6.44450 6.58600 6.81279 7.13708 7.33549 7.47540 7.81867 7.91982 8.52874 8.99276 9.65544 10.58180 11.36354 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035818 B = 0.003510 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.533863 B = 7975.260970 C = 8239.977791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.135 4.135 3 C -0.104 4.104 4 C -0.103 4.103 5 H 0.092 0.908 6 C 0.515 3.485 7 O -0.545 6.545 8 N -0.598 5.598 9 C 0.077 3.923 10 C 0.085 3.915 11 C 0.106 3.894 12 N -0.603 5.603 13 C -0.219 4.219 14 H 0.083 0.917 15 C -0.006 4.006 16 N -0.919 5.919 17 Si 0.915 3.085 18 H -0.288 1.288 19 H -0.279 1.279 20 H -0.289 1.289 21 C 0.155 3.845 22 C -0.089 4.089 23 C -0.152 4.152 24 C -0.166 4.166 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.118 0.882 36 H 0.042 0.958 37 H 0.033 0.967 38 H 0.255 0.745 39 H 0.033 0.967 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.052 0.948 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.054 0.946 46 H 0.055 0.945 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.708 -17.120 2.593 21.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.172 4.172 3 C -0.142 4.142 4 C -0.124 4.124 5 H 0.110 0.890 6 C 0.303 3.697 7 O -0.423 6.423 8 N -0.330 5.330 9 C -0.066 4.066 10 C -0.019 4.019 11 C -0.022 4.022 12 N -0.329 5.329 13 C -0.346 4.346 14 H 0.101 0.899 15 C -0.203 4.203 16 N -0.565 5.565 17 Si 0.745 3.255 18 H -0.216 1.216 19 H -0.204 1.204 20 H -0.215 1.215 21 C 0.028 3.972 22 C -0.107 4.107 23 C -0.209 4.209 24 C -0.223 4.223 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.136 0.864 36 H 0.061 0.939 37 H 0.051 0.949 38 H 0.065 0.935 39 H 0.051 0.949 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.073 0.927 46 H 0.074 0.926 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.814 -16.339 2.724 20.942 hybrid contribution 0.920 0.682 -0.391 1.210 sum -11.894 -15.657 2.333 19.800 Atomic orbital electron populations 1.21789 0.96076 1.01245 1.01952 1.21961 0.95682 0.97201 1.02315 1.21536 0.92552 0.96349 1.03723 1.21467 0.97346 0.93749 0.99850 0.88987 1.20637 0.81562 0.91144 0.76348 1.90658 1.55208 1.46052 1.50369 1.47891 1.10876 1.08039 1.66156 1.21849 0.93930 0.88843 1.02028 1.23749 0.98313 0.81809 0.98036 1.22821 0.91016 0.93942 0.94414 1.45331 1.41235 1.32745 1.13586 1.18924 1.08610 1.03980 1.03096 0.89890 1.24842 0.98167 0.99698 0.97626 1.69846 1.31266 1.40454 1.14936 0.86060 0.79681 0.82337 0.77444 1.21566 1.20425 1.21521 1.22412 0.88228 0.93728 0.92802 1.21098 1.00115 0.95779 0.93748 1.21997 1.00130 1.02092 0.96670 1.22328 1.03296 0.94842 1.01842 0.93001 0.92753 0.92798 0.92078 0.90390 0.90383 0.91666 0.92482 0.91669 0.90306 0.86418 0.93946 0.94949 0.93547 0.94891 0.91669 0.90441 0.92903 0.92158 0.91919 0.92671 0.92601 0.90523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.16 0.37 -0.81 16 2 C -0.13 -1.09 4.22 -26.73 -0.11 -1.20 16 3 C -0.10 -1.13 3.47 -26.73 -0.09 -1.22 16 4 C -0.10 -1.17 1.33 -91.77 -0.12 -1.29 16 5 H 0.09 0.92 6.68 -51.93 -0.35 0.57 16 6 C 0.52 8.25 6.67 -10.98 -0.07 8.18 16 7 O -0.55 -10.76 15.57 5.56 0.09 -10.68 16 8 N -0.60 -9.79 3.12 -173.56 -0.54 -10.33 16 9 C 0.08 1.00 7.97 59.85 0.48 1.47 16 10 C 0.08 1.72 4.59 -67.68 -0.31 1.41 16 11 C 0.11 2.25 8.23 -8.51 -0.07 2.18 16 12 N -0.60 -15.79 3.77 -184.64 -0.70 -16.48 16 13 C -0.22 -6.22 10.74 -15.06 -0.16 -6.38 16 14 H 0.08 2.27 7.83 -52.49 -0.41 1.86 16 15 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 16 N -0.92 -27.40 11.74 55.49 0.65 -26.75 16 17 Si 0.91 22.23 29.56 -169.99 -5.02 17.21 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 C 0.16 3.68 6.66 -8.37 -0.06 3.62 16 22 C -0.09 -0.89 2.28 -90.62 -0.21 -1.09 16 23 C -0.15 -1.55 7.78 37.16 0.29 -1.26 16 24 C -0.17 -1.27 8.82 37.15 0.33 -0.94 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 29 H 0.08 0.57 4.23 -51.93 -0.22 0.35 16 30 H 0.08 0.93 5.97 -51.93 -0.31 0.62 16 31 H 0.06 0.80 8.09 -51.93 -0.42 0.38 16 32 H 0.06 0.70 7.10 -51.93 -0.37 0.33 16 33 H 0.06 0.65 6.20 -51.93 -0.32 0.33 16 34 H 0.08 1.12 6.01 -51.93 -0.31 0.80 16 35 H 0.12 2.62 7.26 -51.93 -0.38 2.25 16 36 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.03 0.66 7.02 -51.93 -0.36 0.29 16 38 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.03 0.77 6.47 -51.93 -0.34 0.43 16 40 H 0.06 1.73 7.49 -51.93 -0.39 1.34 16 41 H 0.08 0.86 5.83 -51.93 -0.30 0.56 16 42 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.76 7.79 -51.93 -0.40 0.35 16 44 H 0.06 0.56 5.38 -51.93 -0.28 0.28 16 45 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.05 0.40 8.13 -51.93 -0.42 -0.02 16 47 H 0.08 0.53 4.00 -51.93 -0.21 0.32 16 LS Contribution 350.00 15.07 5.27 5.27 Total: -1.00 -32.29 350.00 -7.97 -40.26 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -7.89 Total: -0.90 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: 0.16 Total: 2.39 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: -0.59 Total: -53.55 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.29 -7.97 -40.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754582853.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.432 kcal (2) G-P(sol) polarization free energy of solvation -32.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds