Wall clock time and date at job start Tue Mar 31 2020 06:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46960 * 2 1 4 4 C 1.53004 * 109.46671 * 186.03968 * 3 2 1 5 5 H 1.08998 * 109.47257 * 53.53655 * 4 3 2 6 6 C 1.50696 * 109.46812 * 173.53308 * 4 3 2 7 7 O 1.21280 * 120.00152 * 12.73089 * 6 4 3 8 8 N 1.34783 * 120.00097 * 192.72853 * 6 4 3 9 9 C 1.46504 * 119.99567 * 354.52759 * 8 6 4 10 10 C 1.46496 * 120.00198 * 174.52809 * 8 6 4 11 11 C 1.53494 * 114.20884 * 239.99949 * 10 8 6 12 12 N 1.47060 * 87.98610 * 220.14738 * 11 10 8 13 13 C 1.36939 * 136.05562 * 207.07883 * 12 11 10 14 14 H 1.07993 * 120.00386 * 5.39941 * 13 12 11 15 15 C 1.38813 * 119.99590 * 185.39495 * 13 12 11 16 16 N 1.31620 * 120.00408 * 5.34037 * 15 13 12 17 17 Si 1.86807 * 119.99492 * 185.33861 * 15 13 12 18 18 H 1.48493 * 109.47064 * 265.00198 * 17 15 13 19 19 H 1.48496 * 109.47393 * 25.00671 * 17 15 13 20 20 H 1.48503 * 109.46851 * 145.00575 * 17 15 13 21 21 C 1.47065 * 87.88767 * 27.34205 * 12 11 10 22 22 C 1.53002 * 109.47190 * 293.53376 * 4 3 2 23 23 C 1.52998 * 109.47093 * 323.73304 * 22 4 3 24 24 C 1.52993 * 109.47043 * 83.73421 * 22 4 3 25 25 H 1.08995 * 109.47110 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47243 * 300.00208 * 1 2 3 27 27 H 1.08998 * 109.47347 * 59.99642 * 1 2 3 28 28 H 1.08996 * 109.46869 * 239.99907 * 2 1 3 29 29 H 1.08995 * 109.46899 * 120.00110 * 2 1 3 30 30 H 1.08996 * 109.46707 * 66.04446 * 3 2 1 31 31 H 1.08990 * 109.47202 * 306.03732 * 3 2 1 32 32 H 1.08998 * 109.47205 * 274.08508 * 9 8 6 33 33 H 1.08996 * 109.47116 * 34.08680 * 9 8 6 34 34 H 1.08999 * 109.46634 * 154.08476 * 9 8 6 35 35 H 1.09002 * 113.27880 * 13.06984 * 10 8 6 36 36 H 1.09005 * 113.46721 * 105.36374 * 11 10 8 37 37 H 1.08997 * 113.46551 * 334.93315 * 11 10 8 38 38 H 0.96997 * 119.99874 * 179.97438 * 16 15 13 39 39 H 1.09000 * 113.46694 * 87.43184 * 21 12 11 40 40 H 1.08998 * 113.47061 * 217.87744 * 21 12 11 41 41 H 1.08999 * 109.46822 * 203.73597 * 22 4 3 42 42 H 1.09004 * 109.47196 * 185.80618 * 23 22 4 43 43 H 1.08997 * 109.47287 * 305.80689 * 23 22 4 44 44 H 1.09000 * 109.47122 * 65.80544 * 23 22 4 45 45 H 1.08993 * 109.47375 * 68.21988 * 24 22 4 46 46 H 1.09002 * 109.46940 * 188.21669 * 24 22 4 47 47 H 1.09001 * 109.47494 * 308.21134 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5625 1.4451 -0.1518 5 1 3.8410 0.8644 -1.0311 6 6 4.0489 2.8625 -0.3112 7 8 3.3032 3.7896 -0.0763 8 7 5.3128 3.0999 -0.7149 9 6 6.2494 1.9859 -0.8831 10 6 5.7499 4.4717 -0.9855 11 6 6.2280 4.7076 -2.4249 12 7 7.3049 5.5445 -1.8749 13 6 8.0566 6.6003 -2.3170 14 1 7.8408 7.0540 -3.2729 15 6 9.0958 7.0875 -1.5362 16 7 9.4267 6.4706 -0.4216 17 14 10.0247 8.6187 -2.0675 18 1 11.2444 8.2228 -2.8163 19 1 9.1550 9.4473 -2.9406 20 1 10.4131 9.4032 -0.8680 21 6 7.2240 4.7442 -0.6437 22 6 4.2001 0.8240 1.0926 23 6 3.3918 1.2178 2.3305 24 6 4.2106 -0.6996 0.9538 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.7677 1.9241 0.9391 31 1 1.5911 1.9866 -0.8309 32 1 6.7228 1.7619 0.0728 33 1 5.7094 1.1073 -1.2358 34 1 7.0127 2.2599 -1.6113 35 1 5.0552 5.2260 -0.6159 36 1 5.5145 5.2630 -3.0337 37 1 6.5883 3.8038 -2.9161 38 1 10.1531 6.8109 0.1237 39 1 7.8470 3.8501 -0.6655 40 1 7.3592 5.3308 0.2650 41 1 5.2229 1.1865 1.1961 42 1 3.9021 0.8626 3.2258 43 1 3.2971 2.3029 2.3725 44 1 2.4002 0.7685 2.2750 45 1 4.9025 -0.9876 0.1624 46 1 4.5283 -1.1480 1.8951 47 1 3.2084 -1.0487 0.7051 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754582853.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:34 Heat of formation + Delta-G solvation = -4.404448 kcal Electronic energy + Delta-G solvation = -23542.880433 eV Core-core repulsion = 20340.855327 eV Total energy + Delta-G solvation = -3202.025106 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.66595 -39.90403 -38.04672 -35.99361 -34.22560 -33.83320 -30.59934 -29.56135 -28.16436 -27.85589 -26.50836 -26.41372 -24.75300 -22.03555 -21.95030 -20.44929 -19.75151 -18.85887 -18.03554 -17.40851 -17.21500 -16.80699 -16.16080 -15.78144 -15.50916 -14.85715 -14.82240 -14.37991 -14.29581 -13.84653 -13.75770 -13.71721 -13.34042 -13.25999 -13.13908 -13.08166 -12.95285 -12.87984 -12.64267 -12.46775 -12.35485 -12.12964 -12.03136 -11.97039 -11.74888 -11.67266 -11.42457 -11.32482 -10.90870 -10.73600 -10.56725 -9.51993 -9.01250 -7.98629 -5.32024 1.43816 1.46431 1.55872 1.64461 1.98385 2.46375 3.24675 3.42748 3.54655 3.73260 3.79073 3.88251 4.11627 4.20606 4.24719 4.31805 4.33389 4.37699 4.49519 4.57815 4.66570 4.68131 4.73015 4.80040 4.83852 4.87345 4.89426 4.98168 5.01357 5.11026 5.13158 5.15385 5.18765 5.19807 5.26991 5.37019 5.38818 5.40384 5.46306 5.59376 5.68872 5.69940 5.82875 6.50580 6.83281 7.22230 7.51717 8.50882 9.20330 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035818 B = 0.003510 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.533863 B = 7975.260970 C = 8239.977791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.127 4.127 3 C -0.102 4.102 4 C -0.092 4.092 5 H 0.118 0.882 6 C 0.509 3.491 7 O -0.590 6.590 8 N -0.598 5.598 9 C 0.073 3.927 10 C 0.110 3.890 11 C 0.113 3.887 12 N -0.635 5.635 13 C -0.235 4.235 14 H 0.088 0.912 15 C -0.064 4.064 16 N -0.952 5.952 17 Si 0.985 3.015 18 H -0.282 1.282 19 H -0.267 1.267 20 H -0.293 1.293 21 C 0.161 3.839 22 C -0.086 4.086 23 C -0.151 4.151 24 C -0.161 4.161 25 H 0.067 0.933 26 H 0.048 0.952 27 H 0.046 0.954 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.061 0.939 31 H 0.046 0.954 32 H 0.066 0.934 33 H 0.105 0.895 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.045 0.955 37 H 0.057 0.943 38 H 0.251 0.749 39 H 0.040 0.960 40 H 0.025 0.975 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.026 0.974 44 H 0.075 0.925 45 H 0.067 0.933 46 H 0.063 0.937 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.086 -19.706 1.736 23.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.164 4.164 3 C -0.140 4.140 4 C -0.113 4.113 5 H 0.136 0.864 6 C 0.300 3.700 7 O -0.470 6.470 8 N -0.330 5.330 9 C -0.069 4.069 10 C 0.004 3.996 11 C -0.013 4.013 12 N -0.362 5.362 13 C -0.362 4.362 14 H 0.106 0.894 15 C -0.258 4.258 16 N -0.600 5.600 17 Si 0.812 3.188 18 H -0.208 1.208 19 H -0.192 1.192 20 H -0.220 1.220 21 C 0.034 3.966 22 C -0.105 4.105 23 C -0.208 4.208 24 C -0.217 4.217 25 H 0.086 0.914 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.094 0.906 29 H 0.109 0.891 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.123 0.877 34 H 0.087 0.913 35 H 0.110 0.890 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.044 0.956 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.045 0.955 44 H 0.094 0.906 45 H 0.086 0.914 46 H 0.082 0.918 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.211 -18.972 1.848 23.192 hybrid contribution 0.968 1.468 -0.099 1.761 sum -12.243 -17.504 1.748 21.433 Atomic orbital electron populations 1.21805 0.95872 1.02117 1.01445 1.21931 0.95838 0.94998 1.03611 1.21514 0.92115 0.98206 1.02116 1.21531 0.97620 0.90421 1.01708 0.86391 1.21581 0.80721 0.92857 0.74860 1.90640 1.56328 1.47952 1.52095 1.47908 1.11871 1.07058 1.66132 1.22091 0.93579 0.88714 1.02515 1.23008 0.95644 0.83967 0.96995 1.22888 0.89582 0.93971 0.94888 1.45630 1.42014 1.33355 1.15154 1.19325 1.08740 1.04875 1.03283 0.89443 1.25729 0.99376 1.02855 0.97821 1.70022 1.31813 1.42034 1.16105 0.84979 0.78383 0.78551 0.76900 1.20849 1.19201 1.21951 1.22313 0.90621 0.92985 0.90645 1.21113 0.99114 0.97762 0.92535 1.21994 1.01262 0.99995 0.97546 1.22296 1.04429 0.92137 1.02868 0.91387 0.93244 0.93469 0.90615 0.89080 0.92008 0.93539 0.91570 0.87692 0.91313 0.88999 0.93643 0.92517 0.94031 0.94188 0.95621 0.91447 0.91894 0.95459 0.90570 0.91358 0.91840 0.89423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.91 71.98 0.71 -1.32 16 2 C -0.13 -1.67 4.22 30.60 0.13 -1.54 16 3 C -0.10 -2.08 3.47 30.60 0.11 -1.97 16 4 C -0.09 -1.91 1.33 -11.54 -0.02 -1.92 16 5 H 0.12 1.87 6.68 -2.39 -0.02 1.85 16 6 C 0.51 16.16 6.67 87.65 0.58 16.74 16 7 O -0.59 -24.05 15.57 -3.03 -0.05 -24.10 16 8 N -0.60 -19.24 3.12 -821.41 -2.56 -21.80 16 9 C 0.07 1.72 7.97 127.77 1.02 2.74 16 10 C 0.11 4.55 4.59 45.55 0.21 4.75 16 11 C 0.11 4.81 8.23 83.18 0.68 5.50 16 12 N -0.64 -33.84 3.77 -738.06 -2.78 -36.62 16 13 C -0.23 -13.50 10.74 84.03 0.90 -12.60 16 14 H 0.09 4.80 7.83 -2.91 -0.02 4.77 16 15 C -0.06 -3.73 5.50 84.86 0.47 -3.26 16 16 N -0.95 -58.25 11.74 21.65 0.25 -58.00 16 17 Si 0.98 46.22 29.56 68.60 2.03 48.25 16 18 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 20 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 21 C 0.16 7.87 6.66 83.27 0.55 8.43 16 22 C -0.09 -1.52 2.28 -10.80 -0.02 -1.54 16 23 C -0.15 -2.91 7.78 71.98 0.56 -2.35 16 24 C -0.16 -1.77 8.82 71.98 0.63 -1.13 16 25 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.08 0.82 8.09 -2.39 -0.02 0.80 16 29 H 0.09 0.98 4.23 -2.39 -0.01 0.97 16 30 H 0.06 1.46 5.97 -2.39 -0.01 1.45 16 31 H 0.05 1.12 8.09 -2.39 -0.02 1.10 16 32 H 0.07 1.47 7.10 -2.39 -0.02 1.46 16 33 H 0.10 1.65 6.20 -2.39 -0.01 1.64 16 34 H 0.07 1.80 6.01 -2.39 -0.01 1.79 16 35 H 0.09 4.31 7.26 -2.39 -0.02 4.30 16 36 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 37 H 0.06 2.18 7.02 -2.39 -0.02 2.16 16 38 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 39 H 0.04 1.89 6.47 -2.39 -0.02 1.88 16 40 H 0.03 1.43 7.49 -2.39 -0.02 1.41 16 41 H 0.07 1.35 5.83 -2.39 -0.01 1.33 16 42 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.03 0.69 7.79 -2.39 -0.02 0.67 16 44 H 0.08 1.23 5.38 -2.39 -0.01 1.22 16 45 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.06 0.65 8.13 -2.39 -0.02 0.63 16 47 H 0.09 0.79 4.00 -2.39 -0.01 0.78 16 Total: -1.00 -72.76 350.00 4.36 -68.40 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 0.94 Total: 13.34 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: 6.52 Total: 10.52 kcal Atomic # 7 Polarization: -111.33 SS G_CDS: -5.09 Total: -116.42 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.05 Total: -24.10 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -72.76 4.36 -68.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754582853.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.996 kcal (2) G-P(sol) polarization free energy of solvation -72.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds