Wall clock time and date at job start Tue Mar 31 2020 06:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47029 * 2 1 4 4 C 1.52993 * 109.47332 * 181.96597 * 3 2 1 5 5 H 1.09008 * 109.47233 * 305.20367 * 4 3 2 6 6 C 1.50694 * 109.47383 * 185.19814 * 4 3 2 7 7 O 1.21275 * 120.00068 * 321.87539 * 6 4 3 8 8 N 1.34779 * 120.00260 * 141.87357 * 6 4 3 9 9 C 1.46505 * 119.99745 * 355.21358 * 8 6 4 10 10 C 1.46499 * 120.00192 * 175.20838 * 8 6 4 11 11 C 1.53947 * 113.83787 * 141.35528 * 10 8 6 12 12 N 1.47584 * 86.11874 * 90.75151 * 11 10 8 13 13 C 1.36932 * 134.49211 * 204.64448 * 12 11 10 14 14 H 1.07995 * 119.99824 * 180.02562 * 13 12 11 15 15 C 1.38805 * 120.00086 * 359.97438 * 13 12 11 16 16 N 1.31625 * 120.00340 * 0.02562 * 15 13 12 17 17 Si 1.86808 * 120.00309 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46691 * 60.00162 * 17 15 13 19 19 H 1.48490 * 109.47218 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.46720 * 300.00592 * 17 15 13 21 21 C 1.47588 * 91.01316 * 24.63867 * 12 11 10 22 22 C 1.53004 * 109.46948 * 65.19840 * 4 3 2 23 23 C 1.52995 * 109.46967 * 64.38309 * 22 4 3 24 24 C 1.53005 * 109.47175 * 184.38122 * 22 4 3 25 25 H 1.09002 * 109.47314 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47360 * 299.99165 * 1 2 3 27 27 H 1.08999 * 109.47514 * 59.99482 * 1 2 3 28 28 H 1.08996 * 109.46945 * 240.00648 * 2 1 3 29 29 H 1.08999 * 109.47514 * 120.00518 * 2 1 3 30 30 H 1.09007 * 109.46739 * 61.96479 * 3 2 1 31 31 H 1.08998 * 109.47306 * 301.97112 * 3 2 1 32 32 H 1.09000 * 109.46618 * 272.91535 * 9 8 6 33 33 H 1.08994 * 109.47564 * 32.91145 * 9 8 6 34 34 H 1.08997 * 109.46995 * 152.91913 * 9 8 6 35 35 H 1.08998 * 112.94403 * 9.66728 * 10 8 6 36 36 H 1.09005 * 113.76776 * 205.05228 * 11 10 8 37 37 H 1.08995 * 113.76870 * 336.44960 * 11 10 8 38 38 H 0.96990 * 120.00277 * 179.97438 * 16 15 13 39 39 H 1.08996 * 113.76569 * 221.05760 * 21 12 11 40 40 H 1.08994 * 113.76662 * 89.66128 * 21 12 11 41 41 H 1.09001 * 109.47222 * 304.37901 * 22 4 3 42 42 H 1.09000 * 109.47582 * 66.15930 * 23 22 4 43 43 H 1.09008 * 109.47183 * 186.15697 * 23 22 4 44 44 H 1.09000 * 109.47277 * 306.15300 * 23 22 4 45 45 H 1.09000 * 109.47033 * 63.47945 * 24 22 4 46 46 H 1.09000 * 109.47330 * 183.48185 * 24 22 4 47 47 H 1.09003 * 109.46951 * 303.48376 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5691 1.4429 -0.0495 5 1 3.9594 0.8410 0.7713 6 6 4.0756 2.8564 0.0791 7 8 3.4808 3.7651 -0.4606 8 7 5.1895 3.1107 0.7939 9 6 5.8488 2.0305 1.5320 10 6 5.7412 4.4673 0.8327 11 6 6.2924 4.8756 2.2109 12 7 7.5846 4.3391 1.7414 13 6 8.6978 3.8378 2.3616 14 1 9.5379 3.5002 1.7730 15 6 8.7467 3.7646 3.7469 16 7 7.7230 4.1765 4.4644 17 14 10.2656 3.0814 4.5931 18 1 11.4457 3.9090 4.2356 19 1 10.0676 3.1102 6.0644 20 1 10.4906 1.6816 4.1515 21 6 7.1951 4.5596 0.3351 22 6 4.0364 0.8529 -1.3816 23 6 3.5808 1.7580 -2.5280 24 6 5.5631 0.7521 -1.3873 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8932 -0.5137 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.7056 1.9461 0.9072 31 1 1.6481 1.9665 -0.8718 32 1 5.3998 1.9396 2.5211 33 1 5.7265 1.0927 0.9900 34 1 6.9104 2.2554 1.6341 35 1 5.0773 5.2088 0.3882 36 1 6.2991 5.9525 2.3799 37 1 5.8597 4.3164 3.0403 38 1 7.7571 4.1250 5.4323 39 1 7.4832 3.7480 -0.3330 40 1 7.4670 5.5436 -0.0469 41 1 3.6062 -0.1404 -1.5099 42 1 4.0958 2.7163 -2.4611 43 1 3.8171 1.2843 -3.4809 44 1 2.5048 1.9182 -2.4589 45 1 5.8843 0.0590 -0.6098 46 1 5.8997 0.3900 -2.3587 47 1 5.9928 1.7357 -1.1973 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754582854.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:41 Heat of formation + Delta-G solvation = 6.406741 kcal Electronic energy + Delta-G solvation = -24158.628225 eV Core-core repulsion = 20957.071927 eV Total energy + Delta-G solvation = -3201.556298 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.28586 -38.12573 -36.25325 -34.12639 -33.57955 -32.02192 -29.44683 -27.99253 -27.02881 -25.99436 -24.77369 -24.74662 -22.87976 -21.89629 -20.81464 -18.82500 -17.81957 -17.03100 -16.55995 -15.82378 -15.43209 -15.24394 -14.75038 -14.06215 -13.96390 -13.66313 -13.64190 -13.42715 -13.06986 -12.60017 -12.57157 -12.40509 -12.00389 -11.92110 -11.79870 -11.58239 -11.42015 -11.30626 -11.23796 -11.14039 -10.92981 -10.86801 -10.66638 -10.62098 -10.44234 -10.15483 -10.11993 -9.77267 -9.54218 -9.19661 -8.77143 -7.89953 -6.89143 -5.81026 -3.14380 3.06775 3.35275 3.40799 3.41725 3.54203 4.41415 4.66673 4.73466 4.89481 5.03515 5.07947 5.13500 5.20811 5.30803 5.44865 5.51738 5.57599 5.60743 5.62647 5.73556 5.76110 5.81487 5.86485 5.90082 5.97428 6.05221 6.10498 6.14137 6.16878 6.24459 6.26902 6.29626 6.31951 6.41119 6.50197 6.53965 6.58921 6.79764 7.01379 7.19766 7.35664 7.55441 7.92352 8.08503 8.69945 8.99907 9.65944 10.55352 11.34895 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022646 B = 0.004529 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.147677 B = 6181.365377 C = 6368.675680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.104 4.104 4 C -0.106 4.106 5 H 0.090 0.910 6 C 0.520 3.480 7 O -0.554 6.554 8 N -0.576 5.576 9 C 0.066 3.934 10 C 0.087 3.913 11 C 0.153 3.847 12 N -0.607 5.607 13 C -0.227 4.227 14 H 0.078 0.922 15 C -0.003 4.003 16 N -0.917 5.917 17 Si 0.908 3.092 18 H -0.286 1.286 19 H -0.290 1.290 20 H -0.284 1.284 21 C 0.105 3.895 22 C -0.081 4.081 23 C -0.149 4.149 24 C -0.157 4.157 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.048 0.952 33 H 0.056 0.944 34 H 0.115 0.885 35 H 0.092 0.908 36 H 0.035 0.965 37 H 0.078 0.922 38 H 0.254 0.746 39 H 0.045 0.955 40 H 0.042 0.958 41 H 0.079 0.921 42 H 0.062 0.938 43 H 0.048 0.952 44 H 0.059 0.941 45 H 0.058 0.942 46 H 0.054 0.946 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.047 -8.802 -9.752 16.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.142 4.142 4 C -0.128 4.128 5 H 0.108 0.892 6 C 0.308 3.692 7 O -0.433 6.433 8 N -0.307 5.307 9 C -0.076 4.076 10 C -0.018 4.018 11 C 0.027 3.973 12 N -0.334 5.334 13 C -0.354 4.354 14 H 0.096 0.904 15 C -0.200 4.200 16 N -0.564 5.564 17 Si 0.738 3.262 18 H -0.213 1.213 19 H -0.216 1.216 20 H -0.211 1.211 21 C -0.021 4.021 22 C -0.100 4.100 23 C -0.206 4.206 24 C -0.214 4.214 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.134 0.866 35 H 0.110 0.890 36 H 0.053 0.947 37 H 0.097 0.903 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.097 0.903 42 H 0.081 0.919 43 H 0.067 0.933 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.073 0.927 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.144 -8.418 -9.725 16.381 hybrid contribution 1.098 -0.193 0.757 1.347 sum -9.046 -8.612 -8.969 15.376 Atomic orbital electron populations 1.21759 0.95969 1.01282 1.01879 1.21589 0.95741 0.96852 1.02058 1.21511 0.92796 0.96704 1.03192 1.21464 0.97182 0.94400 0.99715 0.89184 1.20476 0.79978 0.90676 0.78097 1.90613 1.57466 1.46957 1.48290 1.47444 1.25811 1.09644 1.47755 1.22154 1.02666 0.88116 0.94687 1.22879 0.94499 0.83533 1.00844 1.22620 0.84578 0.96601 0.93513 1.46146 1.16101 1.71195 0.99951 1.18939 0.93360 1.33748 0.89381 0.90397 1.24751 0.97852 1.01482 0.95914 1.69808 1.29774 1.51707 1.05118 0.86268 0.82441 0.78795 0.78647 1.21266 1.21597 1.21054 1.23016 0.91611 0.98120 0.89402 1.21036 0.96173 0.99288 0.93470 1.21926 1.01920 1.00017 0.96718 1.22044 0.94999 1.02765 1.01573 0.92975 0.92776 0.92774 0.91727 0.92048 0.91899 0.90530 0.93346 0.92520 0.86635 0.88973 0.94697 0.90340 0.93553 0.93701 0.94078 0.90318 0.91861 0.93331 0.92173 0.92308 0.92669 0.91826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 37.16 0.37 -0.95 16 2 C -0.12 -1.19 5.74 -26.73 -0.15 -1.35 16 3 C -0.10 -1.26 4.16 -26.73 -0.11 -1.37 16 4 C -0.11 -1.40 1.59 -91.78 -0.15 -1.55 16 5 H 0.09 1.14 6.04 -51.92 -0.31 0.83 16 6 C 0.52 8.85 5.02 -10.99 -0.06 8.80 16 7 O -0.55 -10.84 14.44 5.56 0.08 -10.76 16 8 N -0.58 -10.49 2.65 -175.74 -0.46 -10.95 16 9 C 0.07 1.18 8.40 59.85 0.50 1.68 16 10 C 0.09 1.74 4.53 -70.13 -0.32 1.43 16 11 C 0.15 3.55 6.77 -2.97 -0.02 3.53 16 12 N -0.61 -14.70 2.28 -178.06 -0.41 -15.11 16 13 C -0.23 -5.99 9.72 -15.06 -0.15 -6.14 16 14 H 0.08 2.01 7.83 -52.49 -0.41 1.59 16 15 C 0.00 -0.08 5.50 -17.43 -0.10 -0.17 16 16 N -0.92 -25.99 11.38 55.49 0.63 -25.36 16 17 Si 0.91 21.30 29.55 -169.99 -5.02 16.27 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 C 0.11 2.16 8.37 -2.97 -0.02 2.13 16 22 C -0.08 -0.94 2.56 -90.62 -0.23 -1.17 16 23 C -0.15 -1.83 8.28 37.16 0.31 -1.52 16 24 C -0.16 -1.89 7.87 37.16 0.29 -1.60 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.57 6.39 -51.93 -0.33 0.24 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 31 H 0.08 0.98 6.08 -51.93 -0.32 0.67 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.83 3.91 -51.93 -0.20 0.62 16 34 H 0.12 2.44 5.21 -51.93 -0.27 2.17 16 35 H 0.09 1.83 7.20 -51.93 -0.37 1.45 16 36 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.08 2.00 6.90 -51.93 -0.36 1.64 16 38 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.08 0.78 6.34 -51.93 -0.33 0.45 16 42 H 0.06 0.94 6.70 -51.93 -0.35 0.59 16 43 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 44 H 0.06 0.73 6.18 -51.93 -0.32 0.41 16 45 H 0.06 0.67 7.01 -51.93 -0.36 0.30 16 46 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.06 0.92 6.50 -51.93 -0.34 0.58 16 LS Contribution 350.20 15.07 5.28 5.28 Total: -1.00 -29.09 350.20 -7.80 -36.89 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -8.06 Total: 2.00 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: 0.17 Total: 1.75 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: -0.24 Total: -51.42 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.08 Total: -10.76 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.09 -7.80 -36.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754582854.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.295 kcal (2) G-P(sol) polarization free energy of solvation -29.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds