Wall clock time and date at job start Tue Mar 31 2020 06:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47358 * 2 1 4 4 C 1.52998 * 109.47036 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47395 * 55.00709 * 4 3 2 6 6 C 1.53004 * 109.47234 * 295.00325 * 4 3 2 7 7 C 1.53004 * 109.47023 * 175.00298 * 4 3 2 8 8 C 1.50700 * 109.47208 * 185.00002 * 7 4 3 9 9 O 1.21283 * 119.99803 * 359.97438 * 8 7 4 10 10 N 1.34777 * 119.99675 * 180.27843 * 8 7 4 11 11 C 1.46497 * 119.99525 * 179.72583 * 10 8 7 12 12 C 1.52998 * 110.88877 * 59.29809 * 11 10 8 13 13 C 1.55164 * 111.00274 * 183.17447 * 11 10 8 14 14 C 1.54434 * 102.89166 * 82.59500 * 13 11 10 15 15 N 1.47029 * 107.27855 * 22.18682 * 14 13 11 16 16 C 1.36933 * 125.64286 * 181.02835 * 15 14 13 17 17 H 1.07999 * 119.99885 * 180.02562 * 16 15 14 18 18 C 1.38816 * 120.00283 * 0.03600 * 16 15 14 19 19 N 1.31615 * 120.00094 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99797 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47000 * 90.00387 * 20 18 16 22 22 H 1.48499 * 109.46973 * 210.00254 * 20 18 16 23 23 H 1.48495 * 109.47407 * 330.00178 * 20 18 16 24 24 C 1.47418 * 108.70389 * 1.06067 * 15 14 13 25 25 H 1.09000 * 109.47288 * 59.99586 * 1 2 3 26 26 H 1.08999 * 109.47061 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47080 * 299.99662 * 1 2 3 28 28 H 1.09007 * 109.46886 * 240.00592 * 2 1 3 29 29 H 1.09000 * 109.47288 * 120.00414 * 2 1 3 30 30 H 1.09007 * 109.46638 * 60.00440 * 3 2 1 31 31 H 1.08994 * 109.47008 * 300.00062 * 3 2 1 32 32 H 1.08996 * 109.47118 * 60.00711 * 6 4 3 33 33 H 1.09000 * 109.46939 * 180.02562 * 6 4 3 34 34 H 1.08997 * 109.47262 * 299.99922 * 6 4 3 35 35 H 1.09009 * 109.46730 * 64.99908 * 7 4 3 36 36 H 1.08998 * 109.46846 * 305.00453 * 7 4 3 37 37 H 0.97000 * 119.99894 * 359.71837 * 10 8 7 38 38 H 1.09004 * 109.47526 * 60.69728 * 12 11 10 39 39 H 1.09003 * 109.47234 * 180.69785 * 12 11 10 40 40 H 1.09002 * 109.47483 * 300.69934 * 12 11 10 41 41 H 1.08997 * 110.71825 * 200.93677 * 13 11 10 42 42 H 1.08997 * 110.72020 * 324.21382 * 13 11 10 43 43 H 1.08994 * 109.87179 * 262.77028 * 14 13 11 44 44 H 1.08996 * 110.00634 * 141.67814 * 14 13 11 45 45 H 0.96997 * 120.00348 * 179.97438 * 19 18 16 46 46 H 1.09000 * 110.36769 * 217.03413 * 24 15 14 47 47 H 1.08997 * 110.37016 * 94.71313 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9337 0.8530 -0.8410 6 6 4.0794 0.8329 1.3083 7 6 4.0801 2.8795 -0.1250 8 6 5.5821 2.8704 -0.2479 9 8 6.1851 1.8182 -0.2357 10 7 6.2555 4.0319 -0.3652 11 6 7.7161 4.0234 -0.4786 12 6 8.1635 3.2233 -1.7036 13 6 8.2789 5.4687 -0.5226 14 6 8.3393 5.8605 0.9700 15 7 8.3778 4.6133 1.7477 16 6 8.4152 4.5255 3.1137 17 1 8.4422 3.5576 3.5920 18 6 8.4183 5.6805 3.8837 19 7 8.3846 6.8601 3.3008 20 14 8.4701 5.5606 5.7471 21 1 9.8832 5.5502 6.2034 22 1 7.7677 6.7280 6.3379 23 1 7.8005 4.3083 6.1814 24 6 8.3702 3.4732 0.8132 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8932 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.6767 1.9563 -0.8899 32 1 3.7161 -0.1908 1.3977 33 1 5.1694 0.8333 1.3089 34 1 3.7158 1.4224 2.1499 35 1 3.7913 3.4462 0.7603 36 1 3.6458 3.3430 -1.0108 37 1 5.7732 4.8734 -0.3747 38 1 7.7548 3.6800 -2.6050 39 1 9.2521 3.2216 -1.7587 40 1 7.8023 2.1983 -1.6199 41 1 9.2748 5.4814 -0.9653 42 1 7.6046 6.1287 -1.0683 43 1 7.4540 6.4371 1.2378 44 1 9.2368 6.4472 1.1656 45 1 8.3864 7.6672 3.8388 46 1 7.7771 2.6538 1.2193 47 1 9.3886 3.1414 0.6112 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754668843.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:28 Heat of formation + Delta-G solvation = -40.153498 kcal Electronic energy + Delta-G solvation = -23492.029508 eV Core-core repulsion = 20288.454207 eV Total energy + Delta-G solvation = -3203.575301 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.90244 -37.74997 -36.37194 -33.86744 -32.71971 -31.82116 -30.05112 -28.66947 -27.53928 -26.57475 -25.62145 -23.65825 -22.33850 -20.77163 -20.16266 -19.59239 -18.91752 -17.08609 -16.42227 -15.64920 -15.43822 -15.02068 -14.61923 -14.27397 -14.06967 -13.67946 -13.52904 -13.32772 -13.13594 -12.72515 -12.27959 -12.21980 -11.89930 -11.87938 -11.71717 -11.64502 -11.55504 -11.48809 -10.98194 -10.86886 -10.84820 -10.64940 -10.54101 -10.44335 -10.31718 -10.28393 -10.05419 -9.93084 -9.62966 -9.02856 -8.60222 -8.43861 -6.76809 -5.68304 -2.99864 3.09635 3.41860 3.47251 3.48954 3.62121 4.53257 4.69955 4.81374 4.86205 5.08435 5.11814 5.18459 5.31750 5.42035 5.47729 5.52740 5.58817 5.65390 5.66436 5.73511 5.75162 5.76859 5.87581 5.91230 5.94620 6.05619 6.13536 6.15067 6.18273 6.20520 6.28339 6.40475 6.44059 6.49458 6.57652 6.70003 6.74506 6.87090 7.22595 7.57672 7.59523 7.82919 8.02918 8.29161 8.72820 9.26436 9.86675 10.53102 11.43769 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015751 B = 0.004591 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.252840 B = 6096.836026 C = 7275.085850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.116 4.116 4 C -0.072 4.072 5 H 0.075 0.925 6 C -0.154 4.154 7 C -0.139 4.139 8 C 0.516 3.484 9 O -0.540 6.540 10 N -0.704 5.704 11 C 0.157 3.843 12 C -0.149 4.149 13 C -0.147 4.147 14 C 0.178 3.822 15 N -0.603 5.603 16 C -0.220 4.220 17 H 0.076 0.924 18 C -0.010 4.010 19 N -0.925 5.925 20 Si 0.910 3.090 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.133 3.867 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.049 0.951 33 H 0.077 0.923 34 H 0.047 0.953 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.397 0.603 38 H 0.047 0.953 39 H 0.060 0.940 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.045 0.955 44 H 0.043 0.957 45 H 0.251 0.749 46 H 0.052 0.948 47 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.531 -7.339 -10.646 17.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.153 4.153 4 C -0.091 4.091 5 H 0.093 0.907 6 C -0.211 4.211 7 C -0.179 4.179 8 C 0.303 3.697 9 O -0.418 6.418 10 N -0.354 5.354 11 C 0.070 3.930 12 C -0.208 4.208 13 C -0.186 4.186 14 C 0.053 3.947 15 N -0.329 5.329 16 C -0.349 4.349 17 H 0.094 0.906 18 C -0.206 4.206 19 N -0.573 5.573 20 Si 0.741 3.259 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.208 1.208 24 C 0.006 3.994 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.066 0.934 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.230 0.770 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.071 0.929 47 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -11.088 -7.938 -10.438 17.172 hybrid contribution -0.187 0.645 1.070 1.263 sum -11.275 -7.293 -9.368 16.373 Atomic orbital electron populations 1.21782 0.96228 1.01323 1.01642 1.21570 0.95366 0.97158 1.02237 1.21690 0.95077 0.96748 1.01814 1.20854 0.94015 0.94404 0.99797 0.90652 1.21989 1.03533 0.99704 0.95864 1.21765 0.92844 0.99454 1.03823 1.20488 0.89707 0.83807 0.75703 1.90595 1.70231 1.31009 1.49982 1.45859 1.07115 1.08490 1.73943 1.21446 0.79343 0.96447 0.95780 1.21998 1.00981 1.01714 0.96113 1.23241 1.00207 0.94117 1.01034 1.21158 1.01050 0.88590 0.83887 1.44437 1.87011 1.00061 1.01402 1.19063 1.42898 0.92827 0.80093 0.90641 1.24755 1.02614 0.95282 0.97930 1.69946 1.57720 0.96439 1.33220 0.86140 0.77573 0.76847 0.85381 1.21670 1.21755 1.20767 1.21861 0.96639 0.91958 0.88902 0.92949 0.93024 0.92828 0.92159 0.91648 0.91962 0.92228 0.93159 0.90373 0.93423 0.89038 0.89585 0.76951 0.93347 0.92091 0.90718 0.91034 0.91849 0.93731 0.93913 0.93913 0.92931 0.95949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.15 0.37 -0.83 16 2 C -0.13 -1.14 5.69 -26.73 -0.15 -1.29 16 3 C -0.12 -1.12 4.68 -26.73 -0.13 -1.25 16 4 C -0.07 -0.86 2.04 -90.62 -0.18 -1.04 16 5 H 0.08 0.97 7.96 -51.93 -0.41 0.56 16 6 C -0.15 -2.09 8.69 37.16 0.32 -1.77 16 7 C -0.14 -1.71 5.17 -27.88 -0.14 -1.85 16 8 C 0.52 8.29 6.92 -10.98 -0.08 8.21 16 9 O -0.54 -10.10 10.77 5.55 0.06 -10.04 16 10 N -0.70 -11.41 5.18 -45.62 -0.24 -11.65 16 11 C 0.16 2.80 0.82 -129.67 -0.11 2.69 16 12 C -0.15 -2.33 8.57 37.16 0.32 -2.01 16 13 C -0.15 -2.64 5.99 -24.83 -0.15 -2.79 16 14 C 0.18 4.23 5.37 -3.00 -0.02 4.21 16 15 N -0.60 -15.56 3.39 -170.01 -0.58 -16.13 16 16 C -0.22 -6.27 10.28 -15.06 -0.15 -6.43 16 17 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 18 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 19 N -0.92 -27.08 10.31 55.49 0.57 -26.51 16 20 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 C 0.13 2.96 6.13 -2.53 -0.02 2.94 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.62 6.56 -51.93 -0.34 0.28 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.61 6.56 -51.93 -0.34 0.27 16 33 H 0.08 1.31 5.95 -51.93 -0.31 1.00 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 1.12 8.14 -51.92 -0.42 0.70 16 36 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.40 5.74 8.50 -40.82 -0.35 5.39 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 40 H 0.07 1.26 6.23 -51.93 -0.32 0.94 16 41 H 0.07 1.21 8.04 -51.93 -0.42 0.79 16 42 H 0.06 0.98 8.07 -51.93 -0.42 0.56 16 43 H 0.04 1.15 7.38 -51.93 -0.38 0.77 16 44 H 0.04 1.14 7.50 -51.93 -0.39 0.75 16 45 H 0.25 7.15 8.31 -40.82 -0.34 6.82 16 46 H 0.05 1.25 6.58 -51.93 -0.34 0.91 16 47 H 0.02 0.51 8.03 -51.93 -0.42 0.09 16 LS Contribution 359.33 15.07 5.42 5.42 Total: -1.00 -31.20 359.33 -8.64 -39.84 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -8.64 Total: 3.23 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -0.21 Total: -1.60 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: -0.24 Total: -54.29 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.06 Total: -10.04 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.20 -8.64 -39.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754668843.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.316 kcal (2) G-P(sol) polarization free energy of solvation -31.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds