Wall clock time and date at job start Tue Mar 31 2020 05:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47032 * 2 1 4 4 C 1.53005 * 109.47352 * 180.02562 * 3 2 1 5 5 C 1.50694 * 109.47185 * 180.02562 * 4 3 2 6 6 O 1.21284 * 120.00470 * 359.97438 * 5 4 3 7 7 N 1.34784 * 120.00059 * 179.97438 * 5 4 3 8 8 C 1.46493 * 120.00100 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47274 * 179.97438 * 8 7 5 10 10 C 1.52998 * 109.52702 * 299.92521 * 9 8 7 11 11 C 1.53351 * 109.68672 * 179.75368 * 9 8 7 12 12 C 1.53041 * 109.60526 * 178.74969 * 11 9 8 13 13 C 1.53194 * 109.31229 * 61.37638 * 12 11 9 14 14 N 1.46917 * 108.77554 * 305.35954 * 13 12 11 15 15 C 1.36933 * 120.63430 * 233.63238 * 14 13 12 16 16 H 1.08005 * 120.00632 * 152.61659 * 15 14 13 17 17 C 1.38816 * 119.99984 * 332.61244 * 15 14 13 18 18 N 1.31622 * 119.99983 * 159.35335 * 17 15 14 19 19 Si 1.86801 * 119.99960 * 339.35455 * 17 15 14 20 20 H 1.48501 * 109.47054 * 92.90061 * 19 17 15 21 21 H 1.48497 * 109.47324 * 212.90565 * 19 17 15 22 22 H 1.48501 * 109.46722 * 332.90341 * 19 17 15 23 23 C 1.46932 * 118.73799 * 53.61305 * 14 13 12 24 24 H 1.08994 * 109.47381 * 60.00062 * 1 2 3 25 25 H 1.09006 * 109.46881 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47236 * 299.99899 * 1 2 3 27 27 H 1.09002 * 109.47236 * 240.00101 * 2 1 3 28 28 H 1.08994 * 109.47381 * 119.99938 * 2 1 3 29 29 H 1.08995 * 109.47223 * 60.00339 * 3 2 1 30 30 H 1.09007 * 109.47271 * 300.00133 * 3 2 1 31 31 H 1.08995 * 109.47090 * 59.99754 * 4 3 2 32 32 H 1.09007 * 109.46631 * 300.00022 * 4 3 2 33 33 H 0.97000 * 119.99572 * 359.97438 * 7 5 4 34 34 H 1.09002 * 109.46903 * 60.00049 * 8 7 5 35 35 H 1.08998 * 109.47715 * 300.00245 * 8 7 5 36 36 H 1.09001 * 109.47360 * 180.02562 * 10 9 8 37 37 H 1.09007 * 109.46826 * 300.07990 * 10 9 8 38 38 H 1.09002 * 109.47210 * 60.07443 * 10 9 8 39 39 H 1.09003 * 109.41850 * 58.71128 * 11 9 8 40 40 H 1.08995 * 109.43070 * 298.79392 * 11 9 8 41 41 H 1.09000 * 109.50178 * 301.42037 * 12 11 9 42 42 H 1.09007 * 109.49540 * 181.32735 * 12 11 9 43 43 H 1.08999 * 109.58288 * 185.57210 * 13 12 11 44 44 H 1.08999 * 109.70502 * 65.22545 * 13 12 11 45 45 H 0.96999 * 119.99742 * 179.97438 * 18 17 15 46 46 H 1.09002 * 109.58853 * 66.17846 * 23 14 13 47 47 H 1.08996 * 109.58543 * 186.45973 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0722 2.8633 0.0000 6 8 3.2841 3.7852 0.0004 7 7 5.3974 3.1097 0.0001 8 6 5.8856 4.4909 0.0002 9 6 7.4156 4.4910 0.0009 10 6 7.9264 3.7718 1.2510 11 6 7.9321 5.9349 -0.0052 12 6 9.4622 5.9330 0.0270 13 6 9.9944 5.2249 -1.2229 14 7 9.3911 3.8877 -1.3018 15 6 10.1777 2.7733 -1.4214 16 1 9.8270 1.8221 -1.0490 17 6 11.4260 2.8660 -2.0216 18 7 12.3375 1.9451 -1.7900 19 14 11.8121 4.2976 -3.1577 20 1 12.4489 5.3899 -2.3788 21 1 12.7393 3.8457 -4.2259 22 1 10.5548 4.7953 -3.7715 23 6 7.9275 3.7688 -1.2494 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.9329 0.9289 -0.8908 32 1 3.9337 0.9286 0.8892 33 1 6.0277 2.3724 0.0001 34 1 5.5222 5.0046 0.8901 35 1 5.5224 5.0048 -0.8898 36 1 9.0164 3.7728 1.2509 37 1 7.5619 4.2860 2.1404 38 1 7.5647 2.7435 1.2520 39 1 7.5510 6.4598 0.8708 40 1 7.5885 6.4390 -0.9084 41 1 9.8068 5.4073 0.9175 42 1 9.8269 6.9601 0.0464 43 1 11.0786 5.1334 -1.1571 44 1 9.7295 5.7985 -2.1111 45 1 13.2097 2.0098 -2.2096 46 1 7.4918 4.2244 -2.1387 47 1 7.6478 2.7163 -1.2038 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754724329.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:47 Heat of formation + Delta-G solvation = -63.855602 kcal Electronic energy + Delta-G solvation = -23158.919988 eV Core-core repulsion = 19954.316887 eV Total energy + Delta-G solvation = -3204.603102 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.09117 -39.94070 -36.69278 -36.09381 -34.77336 -33.09633 -32.43570 -31.29019 -28.10027 -27.59750 -27.00884 -25.12873 -23.67914 -22.75242 -21.91715 -21.17947 -19.51693 -18.71443 -17.91622 -17.20044 -17.00409 -16.84145 -16.16948 -15.66526 -15.45476 -15.36161 -15.15474 -14.81433 -14.52017 -14.25895 -14.16242 -14.02399 -13.67363 -13.37209 -13.21190 -13.15790 -12.86860 -12.57391 -12.40255 -12.17306 -12.11718 -12.03853 -11.95380 -11.83867 -11.64713 -11.48584 -11.42668 -11.26530 -11.11439 -10.77887 -10.63221 -10.01214 -8.88372 -8.14216 -5.44112 1.29844 1.41639 1.49536 1.70965 2.31258 2.43012 3.07740 3.33242 3.81285 3.81907 3.88434 3.93790 3.98363 4.08928 4.26268 4.34897 4.41476 4.41892 4.49107 4.64339 4.67283 4.68388 4.74640 4.78436 4.86430 4.91307 4.97185 4.99428 5.02676 5.05142 5.10608 5.13853 5.16407 5.30246 5.31290 5.32845 5.38710 5.41287 5.50245 5.55789 5.67081 5.89653 6.15644 6.59648 6.94303 7.29664 7.65593 8.07066 9.05490 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023181 B = 0.003699 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.613158 B = 7568.284146 C = 8266.657077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.101 4.101 4 C -0.138 4.138 5 C 0.507 3.493 6 O -0.589 6.589 7 N -0.721 5.721 8 C 0.142 3.858 9 C -0.080 4.080 10 C -0.125 4.125 11 C -0.095 4.095 12 C -0.128 4.128 13 C 0.116 3.884 14 N -0.613 5.613 15 C -0.236 4.236 16 H 0.059 0.941 17 C -0.034 4.034 18 N -0.957 5.957 19 Si 0.941 3.059 20 H -0.278 1.278 21 H -0.316 1.316 22 H -0.265 1.265 23 C 0.159 3.841 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.051 0.949 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.110 0.890 32 H 0.114 0.886 33 H 0.410 0.590 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.047 0.953 37 H 0.062 0.938 38 H 0.051 0.949 39 H 0.081 0.919 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.046 0.954 44 H 0.027 0.973 45 H 0.259 0.741 46 H 0.023 0.977 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.948 1.429 5.809 18.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.160 4.160 3 C -0.139 4.139 4 C -0.177 4.177 5 C 0.296 3.704 6 O -0.470 6.470 7 N -0.373 5.373 8 C 0.018 3.982 9 C -0.082 4.082 10 C -0.182 4.182 11 C -0.133 4.133 12 C -0.167 4.167 13 C -0.009 4.009 14 N -0.337 5.337 15 C -0.366 4.366 16 H 0.077 0.923 17 C -0.229 4.229 18 N -0.603 5.603 19 Si 0.771 3.229 20 H -0.205 1.205 21 H -0.245 1.245 22 H -0.190 1.190 23 C 0.034 3.966 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.128 0.872 32 H 0.132 0.868 33 H 0.247 0.753 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.100 0.900 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.064 0.936 44 H 0.045 0.955 45 H 0.068 0.932 46 H 0.041 0.959 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.357 2.026 5.767 19.348 hybrid contribution 1.192 0.140 -0.863 1.478 sum -17.165 2.167 4.904 17.983 Atomic orbital electron populations 1.21779 0.95667 1.02043 1.01681 1.21535 0.96180 0.95364 1.02873 1.21315 0.93006 0.97475 1.02069 1.21766 0.97762 0.91896 1.06313 1.21336 0.81820 0.92715 0.74576 1.90662 1.56317 1.48155 1.51896 1.46157 1.07226 1.09431 1.74497 1.21216 0.92323 0.83077 1.01622 1.21204 0.92809 0.97303 0.96898 1.21696 1.01186 0.99443 0.95905 1.21438 0.94733 0.94520 1.02561 1.21949 0.96463 1.00203 0.98098 1.21414 0.96699 0.86031 0.96727 1.44387 1.01939 1.01826 1.85542 1.18853 0.97734 0.89320 1.30664 0.92314 1.25820 0.96831 0.99443 1.00812 1.69952 1.05060 1.38721 1.46591 0.86006 0.77300 0.80046 0.79542 1.20481 1.24513 1.19012 1.21070 0.82309 0.98714 0.94530 0.93113 0.91794 0.92936 0.91244 0.90974 0.92621 0.92932 0.87192 0.86761 0.75314 0.91304 0.92423 0.93403 0.91934 0.93015 0.90032 0.91864 0.91950 0.90357 0.93585 0.95547 0.93156 0.95918 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 71.98 0.71 -1.31 16 2 C -0.12 -1.64 5.93 30.59 0.18 -1.46 16 3 C -0.10 -1.81 4.50 30.59 0.14 -1.67 16 4 C -0.14 -2.33 5.70 29.85 0.17 -2.16 16 5 C 0.51 12.49 7.83 87.65 0.69 13.18 16 6 O -0.59 -19.19 15.98 -3.04 -0.05 -19.23 16 7 N -0.72 -16.78 5.00 -463.07 -2.31 -19.09 16 8 C 0.14 3.57 4.58 86.38 0.40 3.97 16 9 C -0.08 -2.22 0.53 -52.00 -0.03 -2.25 16 10 C -0.13 -3.49 7.82 71.98 0.56 -2.92 16 11 C -0.09 -2.49 4.73 30.73 0.15 -2.35 16 12 C -0.13 -4.00 5.74 30.67 0.18 -3.83 16 13 C 0.12 4.72 4.21 86.36 0.36 5.08 16 14 N -0.61 -27.02 2.21 -699.09 -1.55 -28.57 16 15 C -0.24 -12.70 10.03 84.03 0.84 -11.86 16 16 H 0.06 3.40 8.06 -2.91 -0.02 3.38 16 17 C -0.03 -1.97 5.23 84.86 0.44 -1.52 16 18 N -0.96 -58.95 13.97 21.65 0.30 -58.65 16 19 Si 0.94 46.23 24.34 68.60 1.67 47.90 16 20 H -0.28 -12.98 6.62 99.48 0.66 -12.32 16 21 H -0.32 -15.96 7.11 99.48 0.71 -15.25 16 22 H -0.27 -12.59 6.64 99.48 0.66 -11.93 16 23 C 0.16 5.59 4.92 86.36 0.43 6.02 16 24 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 26 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.05 1.13 8.10 -2.39 -0.02 1.11 16 30 H 0.05 1.10 8.10 -2.38 -0.02 1.08 16 31 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.11 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.41 8.62 6.22 -92.71 -0.58 8.04 16 34 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.06 1.55 8.14 -2.39 -0.02 1.54 16 36 H 0.05 1.65 5.97 -2.39 -0.01 1.63 16 37 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.05 1.36 6.87 -2.39 -0.02 1.34 16 39 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.06 2.05 6.34 -2.39 -0.02 2.03 16 42 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 43 H 0.05 2.10 4.49 -2.39 -0.01 2.09 16 44 H 0.03 1.07 7.07 -2.39 -0.02 1.05 16 45 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 46 H 0.02 0.81 8.14 -2.39 -0.02 0.80 16 47 H 0.06 2.05 6.83 -2.39 -0.02 2.03 16 Total: -1.00 -67.83 353.90 3.54 -64.29 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 0.25 Total: 16.44 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: 5.22 Total: -3.09 kcal Atomic # 7 Polarization: -102.76 SS G_CDS: -3.56 Total: -106.31 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.05 Total: -19.23 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.67 Total: 47.90 kcal Total: -67.83 3.54 -64.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754724329.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.437 kcal (2) G-P(sol) polarization free energy of solvation -67.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds