Wall clock time and date at job start Tue Mar 31 2020 05:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46832 * 2 1 4 4 C 1.53005 * 109.46753 * 179.97438 * 3 2 1 5 5 C 1.50704 * 109.47009 * 179.97438 * 4 3 2 6 6 O 1.21283 * 119.99929 * 0.02562 * 5 4 3 7 7 N 1.34778 * 119.99815 * 180.27731 * 5 4 3 8 8 C 1.46494 * 119.99885 * 179.72869 * 7 5 4 9 9 C 1.53004 * 109.47294 * 179.97438 * 8 7 5 10 10 C 1.52995 * 109.49371 * 59.93367 * 9 8 7 11 11 C 1.53037 * 109.49866 * 179.97438 * 9 8 7 12 12 C 1.53038 * 109.53671 * 181.31701 * 11 9 8 13 13 C 1.53191 * 109.31491 * 298.63341 * 12 11 9 14 14 N 1.46931 * 108.77150 * 54.63614 * 13 12 11 15 15 C 1.36938 * 120.63066 * 126.39041 * 14 13 12 16 16 H 1.08004 * 119.99689 * 331.82775 * 15 14 13 17 17 C 1.38814 * 120.00020 * 151.82028 * 15 14 13 18 18 N 1.31623 * 119.99801 * 343.08582 * 17 15 14 19 19 Si 1.86798 * 119.99868 * 163.08423 * 17 15 14 20 20 H 1.48509 * 109.47074 * 60.00170 * 19 17 15 21 21 H 1.48500 * 109.47159 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47038 * 300.00222 * 19 17 15 23 23 C 1.46926 * 118.74063 * 306.39290 * 14 13 12 24 24 H 1.08995 * 109.46974 * 300.00351 * 1 2 3 25 25 H 1.08997 * 109.46974 * 60.00367 * 1 2 3 26 26 H 1.08993 * 109.47231 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47436 * 239.99907 * 2 1 3 28 28 H 1.08997 * 109.46974 * 119.99633 * 2 1 3 29 29 H 1.09001 * 109.47440 * 60.00440 * 3 2 1 30 30 H 1.08997 * 109.47463 * 299.99258 * 3 2 1 31 31 H 1.09002 * 109.46940 * 60.00490 * 4 3 2 32 32 H 1.08997 * 109.47324 * 299.99800 * 4 3 2 33 33 H 0.96999 * 120.00177 * 359.72088 * 7 5 4 34 34 H 1.09009 * 109.47354 * 299.99845 * 8 7 5 35 35 H 1.08999 * 109.47621 * 59.99942 * 8 7 5 36 36 H 1.09002 * 109.47873 * 60.00346 * 10 9 8 37 37 H 1.09001 * 109.47125 * 179.97438 * 10 9 8 38 38 H 1.08997 * 109.47496 * 299.99973 * 10 9 8 39 39 H 1.09007 * 109.46242 * 301.34240 * 11 9 8 40 40 H 1.09002 * 109.46135 * 61.29422 * 11 9 8 41 41 H 1.08997 * 109.49682 * 58.59311 * 12 11 9 42 42 H 1.09003 * 109.49345 * 178.68288 * 12 11 9 43 43 H 1.09000 * 109.58764 * 174.42426 * 13 12 11 44 44 H 1.09000 * 109.58957 * 294.84984 * 13 12 11 45 45 H 0.96998 * 119.99267 * 179.97438 * 18 17 15 46 46 H 1.09007 * 109.58178 * 293.82539 * 23 14 13 47 47 H 1.08994 * 109.59043 * 173.39638 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0724 2.8634 0.0000 6 8 3.2842 3.7852 -0.0004 7 7 5.3974 3.1096 -0.0052 8 6 5.8857 4.4908 -0.0119 9 6 7.4158 4.4908 -0.0162 10 6 7.9228 3.7635 -1.2631 11 6 7.9265 5.9334 -0.0238 12 6 9.4564 5.9345 -0.0613 13 6 9.9945 5.2377 1.1924 14 7 9.3940 3.8998 1.2843 15 6 10.1834 2.7880 1.4106 16 1 11.1847 2.7878 1.0060 17 6 9.6965 1.6612 2.0590 18 7 8.6356 1.7539 2.8324 19 14 10.5472 0.0135 1.8337 20 1 11.9540 0.1150 2.2984 21 1 9.8379 -1.0223 2.6271 22 1 10.5262 -0.3621 0.3972 23 6 7.9306 3.7775 1.2379 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 3.9337 0.9286 -0.8892 32 1 3.9330 0.9289 0.8908 33 1 6.0278 2.3724 -0.0045 34 1 5.5195 5.0014 -0.9026 35 1 5.5254 5.0079 0.8774 36 1 7.5572 4.2728 -2.1548 37 1 9.0128 3.7642 -1.2661 38 1 7.5597 2.7358 -1.2572 39 1 7.5413 6.4505 -0.9027 40 1 7.5850 6.4443 0.8765 41 1 9.7989 5.4023 -0.9487 42 1 9.8189 6.9621 -0.0903 43 1 11.0786 5.1477 1.1236 44 1 9.7293 5.8187 2.0757 45 1 8.2952 0.9665 3.2852 46 1 7.4971 4.2396 2.1249 47 1 7.6529 2.7243 1.1992 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754724330.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:52 Heat of formation + Delta-G solvation = -50.968058 kcal Electronic energy + Delta-G solvation = -23467.992455 eV Core-core repulsion = 20263.948199 eV Total energy + Delta-G solvation = -3204.044256 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.66694 -38.32993 -35.44013 -34.64136 -33.19074 -31.50494 -30.38854 -29.84646 -26.61442 -25.89528 -25.31937 -23.97700 -22.19161 -21.16925 -20.49548 -19.91110 -17.96658 -16.85068 -16.48015 -15.94998 -15.58584 -15.00213 -14.61028 -14.10515 -13.96442 -13.75996 -13.64790 -13.49398 -13.13799 -12.95757 -12.64538 -12.34483 -12.22694 -12.16353 -11.61765 -11.32477 -11.30088 -11.22401 -11.04903 -10.97273 -10.86245 -10.65205 -10.60617 -10.43534 -10.18637 -10.11877 -9.84197 -9.68009 -9.42166 -9.38020 -8.63899 -8.50572 -6.68705 -5.83238 -3.25583 2.97305 3.33350 3.39811 3.40905 3.57899 4.44804 4.82724 4.89318 4.90706 5.13726 5.24758 5.28252 5.30169 5.44844 5.50527 5.51687 5.58345 5.67586 5.76235 5.78301 5.80190 5.88042 5.98808 6.04521 6.05888 6.11069 6.17510 6.22866 6.27918 6.34818 6.41058 6.44026 6.54504 6.63181 6.79150 6.84583 6.90205 6.96700 7.04089 7.28266 7.56418 7.74705 7.89791 8.40209 8.56982 9.17038 9.80342 10.38198 11.24665 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014242 B = 0.004996 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.534292 B = 5603.522601 C = 7152.716902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.102 4.102 4 C -0.143 4.143 5 C 0.510 3.490 6 O -0.556 6.556 7 N -0.719 5.719 8 C 0.136 3.864 9 C -0.103 4.103 10 C -0.125 4.125 11 C -0.095 4.095 12 C -0.135 4.135 13 C 0.143 3.857 14 N -0.589 5.589 15 C -0.250 4.250 16 H 0.064 0.936 17 C 0.004 3.996 18 N -0.902 5.902 19 Si 0.898 3.102 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.284 1.284 23 C 0.187 3.813 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.406 0.594 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.035 0.965 37 H 0.071 0.929 38 H 0.044 0.956 39 H 0.047 0.953 40 H 0.055 0.945 41 H 0.062 0.938 42 H 0.049 0.951 43 H 0.052 0.948 44 H 0.016 0.984 45 H 0.254 0.746 46 H 0.017 0.983 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.557 0.063 -7.130 11.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.140 4.140 4 C -0.183 4.183 5 C 0.296 3.704 6 O -0.435 6.435 7 N -0.370 5.370 8 C 0.012 3.988 9 C -0.105 4.105 10 C -0.182 4.182 11 C -0.133 4.133 12 C -0.174 4.174 13 C 0.017 3.983 14 N -0.311 5.311 15 C -0.380 4.380 16 H 0.082 0.918 17 C -0.195 4.195 18 N -0.547 5.547 19 Si 0.728 3.272 20 H -0.209 1.209 21 H -0.217 1.217 22 H -0.210 1.210 23 C 0.060 3.940 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.108 0.892 32 H 0.113 0.887 33 H 0.242 0.758 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.054 0.946 37 H 0.090 0.910 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.034 0.966 45 H 0.064 0.936 46 H 0.035 0.965 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.158 0.585 -7.009 11.547 hybrid contribution 0.789 -1.220 0.023 1.453 sum -8.370 -0.636 -6.985 10.920 Atomic orbital electron populations 1.21756 0.95915 1.01326 1.01908 1.21562 0.95907 0.96874 1.02047 1.21343 0.93015 0.96275 1.03386 1.21706 0.97794 0.94358 1.04487 1.20672 0.82334 0.91534 0.75823 1.90653 1.55529 1.46666 1.50604 1.46129 1.06936 1.09733 1.74236 1.21343 0.94094 0.82336 1.01029 1.21536 0.91960 0.96972 1.00040 1.21711 1.02604 0.98748 0.95167 1.21348 0.96267 0.95254 1.00475 1.22047 0.95355 0.99189 1.00829 1.20934 0.96431 0.87273 0.93691 1.43983 1.01528 1.00765 1.84819 1.19133 0.98039 0.91040 1.29750 0.91813 1.25014 0.98579 0.99210 0.96695 1.70034 1.25826 1.28496 1.30331 0.86434 0.79129 0.83975 0.77643 1.20916 1.21653 1.21040 1.20777 0.83279 0.99923 0.89975 0.92692 0.92794 0.92938 0.92066 0.91892 0.91293 0.91455 0.89192 0.88741 0.75824 0.92498 0.92046 0.94597 0.91025 0.93686 0.93437 0.92602 0.91974 0.93232 0.92950 0.96574 0.93619 0.96510 0.89423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 37.16 0.37 -0.95 16 2 C -0.13 -1.20 5.93 -26.73 -0.16 -1.36 16 3 C -0.10 -1.20 4.50 -26.73 -0.12 -1.32 16 4 C -0.14 -1.77 5.70 -27.88 -0.16 -1.93 16 5 C 0.51 8.20 7.83 -10.98 -0.09 8.12 16 6 O -0.56 -10.68 15.98 5.55 0.09 -10.59 16 7 N -0.72 -11.62 5.00 -60.29 -0.30 -11.92 16 8 C 0.14 2.30 4.57 -4.04 -0.02 2.28 16 9 C -0.10 -1.81 0.53 -154.39 -0.08 -1.90 16 10 C -0.13 -2.12 7.81 37.16 0.29 -1.83 16 11 C -0.10 -1.56 4.71 -26.69 -0.13 -1.69 16 12 C -0.14 -2.26 5.74 -26.61 -0.15 -2.41 16 13 C 0.14 2.90 6.52 -3.71 -0.02 2.88 16 14 N -0.59 -13.91 2.43 -172.32 -0.42 -14.33 16 15 C -0.25 -6.51 9.58 -15.06 -0.14 -6.65 16 16 H 0.06 1.65 7.89 -52.48 -0.41 1.23 16 17 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 18 N -0.90 -24.82 11.20 55.49 0.62 -24.20 16 19 Si 0.90 20.72 29.59 -169.99 -5.03 15.70 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 C 0.19 4.12 3.72 -3.71 -0.01 4.11 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 30 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 31 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.41 6.46 6.22 -40.82 -0.25 6.21 16 34 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 1.34 5.97 -51.93 -0.31 1.03 16 38 H 0.04 0.75 6.86 -51.93 -0.36 0.40 16 39 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 1.05 6.33 -51.93 -0.33 0.72 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.09 2.10 4.97 -51.93 -0.26 1.84 16 LS Contribution 360.31 15.07 5.43 5.43 Total: -1.00 -29.10 360.31 -8.77 -37.87 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -8.65 Total: 4.69 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -0.51 Total: -2.64 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: -0.10 Total: -50.45 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.70 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.10 -8.77 -37.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754724330.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.095 kcal (2) G-P(sol) polarization free energy of solvation -29.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds