Wall clock time and date at job start Tue Mar 31 2020 05:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47446 * 2 1 4 4 C 1.53006 * 109.47391 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47127 * 180.02562 * 4 3 2 6 6 H 1.08995 * 109.47189 * 304.99536 * 5 4 3 7 7 C 1.52993 * 109.47406 * 65.00015 * 5 4 3 8 8 C 1.50702 * 109.46995 * 184.99987 * 5 4 3 9 9 O 1.21279 * 119.99924 * 359.97438 * 8 5 4 10 10 N 1.34773 * 120.00310 * 179.97438 * 8 5 4 11 11 C 1.46499 * 120.00414 * 179.97438 * 10 8 5 12 12 H 1.09004 * 109.46878 * 325.00206 * 11 10 8 13 13 C 1.53003 * 109.46938 * 85.00068 * 11 10 8 14 14 C 1.53003 * 109.47295 * 205.00216 * 11 10 8 15 15 C 1.53947 * 113.74168 * 161.82286 * 14 11 10 16 16 N 1.47806 * 86.03347 * 222.08269 * 15 14 11 17 17 C 1.36942 * 134.45413 * 204.64078 * 16 15 14 18 18 H 1.08003 * 119.99690 * 179.86992 * 17 16 15 19 19 C 1.38816 * 120.00041 * 359.87220 * 17 16 15 20 20 N 1.31619 * 119.99805 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99766 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47138 * 90.00077 * 21 19 17 23 23 H 1.48505 * 109.46771 * 209.99754 * 21 19 17 24 24 H 1.48499 * 109.47396 * 329.99442 * 21 19 17 25 25 C 1.47577 * 91.05601 * 24.55136 * 16 15 14 26 26 H 1.08996 * 109.47332 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46958 * 300.00042 * 1 2 3 28 28 H 1.09006 * 109.46720 * 59.99655 * 1 2 3 29 29 H 1.09007 * 109.47183 * 240.00083 * 2 1 3 30 30 H 1.09003 * 109.47159 * 120.00612 * 2 1 3 31 31 H 1.08998 * 109.47077 * 60.00030 * 3 2 1 32 32 H 1.09002 * 109.46970 * 299.99834 * 3 2 1 33 33 H 1.08998 * 109.47214 * 59.99835 * 4 3 2 34 34 H 1.09006 * 109.46520 * 300.00188 * 4 3 2 35 35 H 1.09004 * 109.47531 * 180.02562 * 7 5 4 36 36 H 1.08995 * 109.47337 * 59.99612 * 7 5 4 37 37 H 1.09006 * 109.47228 * 299.99491 * 7 5 4 38 38 H 0.97009 * 119.99727 * 0.02562 * 10 8 5 39 39 H 1.08997 * 109.46908 * 300.06536 * 13 11 10 40 40 H 1.08997 * 109.47098 * 60.06668 * 13 11 10 41 41 H 1.08998 * 109.46685 * 180.02562 * 13 11 10 42 42 H 1.08997 * 112.94072 * 293.41466 * 14 11 10 43 43 H 1.09002 * 113.76754 * 336.34822 * 15 14 11 44 44 H 1.08997 * 113.76622 * 107.74282 * 15 14 11 45 45 H 0.96998 * 120.00098 * 180.02562 * 20 19 17 46 46 H 1.09002 * 113.76834 * 221.15683 * 25 16 15 47 47 H 1.08998 * 113.87418 * 89.76409 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0801 2.8848 0.0000 6 1 3.6452 3.4243 -0.8413 7 6 3.6760 3.5681 1.3078 8 6 5.5820 2.8867 -0.1245 9 8 6.1850 1.8375 -0.2052 10 7 6.2550 4.0541 -0.1460 11 6 7.7150 4.0559 -0.2665 12 1 8.1246 3.1978 0.2665 13 6 8.1050 3.9725 -1.7436 14 6 8.2750 5.3457 0.3368 15 6 9.7764 5.2735 0.6694 16 7 9.4283 5.9788 1.9208 17 6 10.1149 6.7822 2.7917 18 1 9.6163 7.1876 3.6598 19 6 11.4515 7.0757 2.5587 20 7 12.0591 6.5812 1.5010 21 14 12.3877 8.1722 3.7464 22 1 13.0123 7.3371 4.8036 23 1 13.4449 8.9106 3.0098 24 1 11.4504 9.1406 4.3698 25 6 8.0440 5.4717 1.8537 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6768 1.9562 -0.8900 33 1 3.9331 0.9287 -0.8908 34 1 3.9337 0.9284 0.8892 35 1 4.0389 4.5960 1.3081 36 1 4.1108 3.0286 2.1492 37 1 2.5896 3.5669 1.3979 38 1 5.7727 4.8933 -0.0811 39 1 7.7051 3.0543 -2.1736 40 1 7.6964 4.8312 -2.2763 41 1 9.1913 3.9734 -1.8331 42 1 7.9923 6.2355 -0.2256 43 1 10.1438 4.2591 0.8243 44 1 10.4041 5.8563 -0.0048 45 1 12.9932 6.7859 1.3384 46 1 7.2912 6.2125 2.1233 47 1 7.8995 4.5157 2.3570 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755374090.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:25 Heat of formation + Delta-G solvation = -20.350831 kcal Electronic energy + Delta-G solvation = -22508.016634 eV Core-core repulsion = 19305.300041 eV Total energy + Delta-G solvation = -3202.716593 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.00526 -38.17499 -36.49422 -34.72241 -33.61296 -32.10573 -30.43822 -28.62299 -27.45665 -25.49384 -24.75046 -24.04874 -22.70583 -21.30791 -20.68745 -19.93226 -18.88355 -16.96739 -16.67880 -16.01572 -15.93294 -15.02569 -14.79502 -14.51156 -14.02508 -13.94564 -13.67315 -13.58640 -13.37288 -13.08503 -12.76059 -12.41545 -12.27362 -12.03823 -11.87132 -11.56941 -11.50498 -11.38464 -11.20885 -11.15900 -11.11259 -10.87740 -10.83830 -10.65789 -10.63442 -10.32853 -9.98885 -9.79809 -9.48592 -9.34556 -8.79986 -8.74497 -6.86104 -5.75597 -3.07639 2.82066 3.35403 3.39807 3.44273 3.46381 4.46260 4.49600 4.61226 4.68367 4.88804 4.93492 4.97911 5.13501 5.19490 5.24382 5.33142 5.42272 5.43178 5.50940 5.55770 5.57037 5.66398 5.68998 5.73675 5.77439 5.84846 5.85416 5.96035 5.99727 6.04157 6.11346 6.17417 6.24541 6.31944 6.38340 6.47520 6.63100 6.66850 6.86396 7.24109 7.38294 7.57314 7.73321 7.99522 8.43201 9.05944 9.72162 10.61747 11.41718 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.036166 B = 0.002844 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.014897 B = 9843.614906 C =10332.013769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.100 4.100 5 C -0.111 4.111 6 H 0.093 0.907 7 C -0.146 4.146 8 C 0.514 3.486 9 O -0.545 6.545 10 N -0.719 5.719 11 C 0.149 3.851 12 H 0.086 0.914 13 C -0.157 4.157 14 C -0.147 4.147 15 C 0.176 3.824 16 N -0.613 5.613 17 C -0.222 4.222 18 H 0.079 0.921 19 C -0.009 4.009 20 N -0.922 5.922 21 Si 0.912 3.088 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.126 3.874 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.397 0.603 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.028 0.972 44 H 0.074 0.926 45 H 0.254 0.746 46 H 0.040 0.960 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.976 -7.861 -5.863 23.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.159 4.159 4 C -0.138 4.138 5 C -0.133 4.133 6 H 0.112 0.888 7 C -0.203 4.203 8 C 0.300 3.700 9 O -0.422 6.422 10 N -0.369 5.369 11 C 0.045 3.955 12 H 0.104 0.896 13 C -0.215 4.215 14 C -0.167 4.167 15 C 0.050 3.950 16 N -0.339 5.339 17 C -0.350 4.350 18 H 0.097 0.903 19 C -0.206 4.206 20 N -0.569 5.569 21 Si 0.742 3.258 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.206 1.206 25 C 0.000 4.000 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.231 0.769 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.106 0.894 43 H 0.045 0.955 44 H 0.093 0.907 45 H 0.064 0.936 46 H 0.058 0.942 47 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -20.232 -8.422 -5.792 22.668 hybrid contribution 0.428 0.953 0.726 1.272 sum -19.804 -7.470 -5.066 21.764 Atomic orbital electron populations 1.21779 0.96057 1.01464 1.01689 1.21529 0.95589 0.97045 1.02188 1.21693 0.95317 0.96794 1.02046 1.21405 0.94504 0.94373 1.03530 1.21333 0.92408 0.99139 1.00372 0.88846 1.21829 1.01988 1.00503 0.96007 1.20624 0.89729 0.83857 0.75784 1.90683 1.70305 1.31493 1.49743 1.46166 1.08242 1.08323 1.74180 1.21091 0.78629 0.99594 0.96203 0.89622 1.22100 1.02255 1.01228 0.95961 1.23840 1.00844 0.95519 0.96456 1.22226 0.89717 0.95094 0.87998 1.46002 1.06889 1.54055 1.26952 1.19023 0.92649 1.20389 1.02952 0.90337 1.24789 0.96515 1.00890 0.98365 1.69809 1.11026 1.48233 1.27812 0.86123 0.79658 0.79968 0.80033 1.21634 1.21623 1.20650 1.22517 0.89058 0.96164 0.92238 0.92926 0.92818 0.92849 0.92031 0.91977 0.91704 0.92106 0.91207 0.91300 0.91989 0.91966 0.91456 0.76896 0.92901 0.92847 0.91190 0.89420 0.95459 0.90735 0.93634 0.94226 0.95078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.16 0.37 -0.59 16 2 C -0.13 -0.92 5.93 -26.73 -0.16 -1.08 16 3 C -0.12 -0.91 4.97 -26.73 -0.13 -1.04 16 4 C -0.10 -0.98 4.03 -26.73 -0.11 -1.09 16 5 C -0.11 -1.07 2.72 -91.78 -0.25 -1.32 16 6 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 7 C -0.15 -1.23 8.84 37.15 0.33 -0.90 16 8 C 0.51 6.98 7.12 -10.99 -0.08 6.90 16 9 O -0.54 -9.60 15.58 5.56 0.09 -9.52 16 10 N -0.72 -9.31 4.84 -53.80 -0.26 -9.57 16 11 C 0.15 2.34 2.29 -67.93 -0.16 2.19 16 12 H 0.09 1.57 7.48 -51.93 -0.39 1.18 16 13 C -0.16 -2.26 9.44 37.16 0.35 -1.91 16 14 C -0.15 -2.64 3.35 -89.69 -0.30 -2.94 16 15 C 0.18 4.11 6.98 -2.84 -0.02 4.09 16 16 N -0.61 -15.88 3.70 -177.73 -0.66 -16.54 16 17 C -0.22 -6.32 10.70 -15.06 -0.16 -6.48 16 18 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 19 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 20 N -0.92 -27.55 11.39 55.49 0.63 -26.92 16 21 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 C 0.13 2.57 8.38 -2.97 -0.02 2.54 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.45 6.56 -51.93 -0.34 0.11 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.77 7.96 -51.93 -0.41 0.35 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.49 7.57 -51.93 -0.39 0.10 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.46 6.57 -51.93 -0.34 0.11 16 38 H 0.40 4.20 8.02 -40.82 -0.33 3.87 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 42 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 43 H 0.03 0.67 8.03 -51.93 -0.42 0.25 16 44 H 0.07 1.92 7.17 -51.93 -0.37 1.54 16 45 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 46 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.03 0.65 8.10 -51.93 -0.42 0.23 16 LS Contribution 374.08 15.07 5.64 5.64 Total: -1.00 -32.61 374.08 -8.90 -41.51 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -8.88 Total: 0.08 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -0.44 Total: -1.99 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: -0.29 Total: -53.02 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.52 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.61 -8.90 -41.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755374090.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.163 kcal (2) G-P(sol) polarization free energy of solvation -32.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds