Wall clock time and date at job start Tue Mar 31 2020 05:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46924 * 2 1 4 4 C 1.53001 * 109.47222 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.46934 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.47180 * 54.99761 * 5 4 3 7 7 C 1.52996 * 109.46976 * 294.99762 * 5 4 3 8 8 C 1.50702 * 109.46631 * 174.99799 * 5 4 3 9 9 O 1.21275 * 120.00367 * 359.97438 * 8 5 4 10 10 N 1.34774 * 119.99502 * 179.97438 * 8 5 4 11 11 C 1.46501 * 120.00022 * 180.02562 * 10 8 5 12 12 H 1.09001 * 109.47423 * 34.99224 * 11 10 8 13 13 C 1.53001 * 109.46908 * 274.99923 * 11 10 8 14 14 C 1.52992 * 109.47582 * 154.99823 * 11 10 8 15 15 C 1.53500 * 114.20883 * 295.68484 * 14 11 10 16 16 N 1.47070 * 87.98283 * 220.34328 * 15 14 11 17 17 C 1.36930 * 136.05299 * 207.07872 * 16 15 14 18 18 H 1.08007 * 120.00143 * 7.51148 * 17 16 15 19 19 C 1.38820 * 120.00178 * 187.51289 * 17 16 15 20 20 N 1.31614 * 119.99909 * 174.39962 * 19 17 16 21 21 Si 1.86803 * 119.99444 * 354.40064 * 19 17 16 22 22 H 1.48499 * 109.46609 * 174.95554 * 21 19 17 23 23 H 1.48492 * 109.46935 * 294.95499 * 21 19 17 24 24 H 1.48499 * 109.47078 * 54.95909 * 21 19 17 25 25 C 1.47065 * 87.88567 * 27.34016 * 16 15 14 26 26 H 1.08996 * 109.47600 * 299.99425 * 1 2 3 27 27 H 1.08997 * 109.47402 * 60.00561 * 1 2 3 28 28 H 1.09009 * 109.46714 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47473 * 239.99972 * 2 1 3 30 30 H 1.08998 * 109.47729 * 119.99874 * 2 1 3 31 31 H 1.08996 * 109.47037 * 59.99948 * 3 2 1 32 32 H 1.09002 * 109.47253 * 300.00238 * 3 2 1 33 33 H 1.08996 * 109.47248 * 59.99966 * 4 3 2 34 34 H 1.09001 * 109.46783 * 299.99779 * 4 3 2 35 35 H 1.08998 * 109.47386 * 60.00075 * 7 5 4 36 36 H 1.08996 * 109.46971 * 180.02562 * 7 5 4 37 37 H 1.09007 * 109.47004 * 299.99940 * 7 5 4 38 38 H 0.97002 * 120.00125 * 359.97438 * 10 8 5 39 39 H 1.09007 * 109.47052 * 304.63725 * 13 11 10 40 40 H 1.09005 * 109.47232 * 64.62973 * 13 11 10 41 41 H 1.09000 * 109.47345 * 184.63536 * 13 11 10 42 42 H 1.09004 * 113.41473 * 68.88388 * 14 11 10 43 43 H 1.08990 * 113.46969 * 105.56331 * 15 14 11 44 44 H 1.09002 * 113.51182 * 335.13143 * 15 14 11 45 45 H 0.96998 * 120.00609 * 355.00891 * 20 19 17 46 46 H 1.09001 * 113.46626 * 87.44158 * 25 16 15 47 47 H 1.08997 * 113.46259 * 217.87345 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0798 2.8852 0.0000 6 1 3.6455 3.4237 0.8423 7 6 3.6745 3.5699 -1.3068 8 6 5.5818 2.8869 0.1233 9 8 6.1849 1.8378 0.2032 10 7 6.2547 4.0545 0.1446 11 6 7.7149 4.0562 0.2639 12 1 8.1241 3.1983 -0.2695 13 6 8.1060 3.9724 1.7407 14 6 8.2744 5.3461 -0.3395 15 6 8.0340 5.4910 -1.8486 16 7 9.3960 6.0346 -1.9606 17 6 10.0498 6.8892 -2.8075 18 1 9.4978 7.4273 -3.5639 19 6 11.4223 7.0640 -2.6938 20 7 12.0674 7.7983 -3.5752 21 14 12.3534 6.2568 -1.2899 22 1 13.8093 6.4937 -1.4608 23 1 11.9052 6.8389 0.0006 24 1 12.0858 4.7961 -1.2936 25 6 9.7482 5.2512 -0.7669 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6766 1.9563 0.8899 32 1 1.6765 1.9564 -0.8900 33 1 3.9329 0.9290 -0.8908 34 1 3.9336 0.9287 0.8892 35 1 2.5882 3.5686 -1.3960 36 1 4.0381 4.5974 -1.3065 37 1 4.1089 3.0314 -2.1491 38 1 5.7724 4.8936 0.0803 39 1 7.6291 4.7846 2.2895 40 1 7.7788 3.0164 2.1496 41 1 9.1887 4.0566 1.8352 42 1 8.0300 6.2367 0.2396 43 1 7.2566 6.2134 -2.0969 44 1 7.9033 4.5382 -2.3616 45 1 11.5976 8.1576 -4.3440 46 1 10.0698 4.2348 -0.9940 47 1 10.4312 5.7694 -0.0937 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755374091.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:29 Heat of formation + Delta-G solvation = -12.075009 kcal Electronic energy + Delta-G solvation = -22619.504790 eV Core-core repulsion = 19417.147063 eV Total energy + Delta-G solvation = -3202.357727 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.18147 -38.69538 -36.60245 -34.96367 -33.68721 -32.36913 -30.67980 -28.70006 -27.80959 -25.60180 -25.22511 -24.04584 -22.60842 -21.25715 -20.69241 -20.02491 -19.28588 -17.50186 -17.03410 -16.28854 -16.00476 -15.30304 -15.12036 -14.65004 -14.16364 -13.91179 -13.78034 -13.70024 -13.43852 -13.24509 -12.95352 -12.83296 -12.49273 -12.25482 -11.98565 -11.95624 -11.77579 -11.56058 -11.26690 -11.22066 -11.16448 -11.05506 -10.90552 -10.71563 -10.68855 -10.34470 -10.16017 -9.67784 -9.18704 -9.14190 -8.92195 -8.89523 -7.16663 -6.29718 -3.23653 2.70053 3.19844 3.40701 3.45232 3.65492 4.42901 4.51181 4.59904 4.62578 4.70508 4.82269 4.87962 4.91666 4.98926 5.09090 5.18198 5.23634 5.37558 5.42249 5.45275 5.48918 5.50940 5.56290 5.61299 5.67766 5.71319 5.76360 5.79824 5.88512 5.91570 5.95009 6.06782 6.11277 6.18101 6.18765 6.23347 6.25317 6.32534 6.40419 6.62938 6.91316 7.11519 7.58890 8.23007 8.30097 8.97160 9.49756 10.36540 11.20184 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035915 B = 0.003063 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.422407 B = 9138.702527 C = 9599.919956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.100 4.100 5 C -0.111 4.111 6 H 0.094 0.906 7 C -0.146 4.146 8 C 0.516 3.484 9 O -0.543 6.543 10 N -0.720 5.720 11 C 0.151 3.849 12 H 0.088 0.912 13 C -0.159 4.159 14 C -0.141 4.141 15 C 0.131 3.869 16 N -0.629 5.629 17 C -0.304 4.304 18 H 0.082 0.918 19 C -0.026 4.026 20 N -0.934 5.934 21 Si 1.070 2.930 22 H -0.295 1.295 23 H -0.292 1.292 24 H -0.286 1.286 25 C 0.108 3.892 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.399 0.601 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.067 0.933 42 H 0.098 0.902 43 H 0.042 0.958 44 H 0.036 0.964 45 H 0.260 0.740 46 H 0.046 0.954 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.699 -11.327 10.596 26.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.138 4.138 5 C -0.132 4.132 6 H 0.112 0.888 7 C -0.204 4.204 8 C 0.302 3.698 9 O -0.421 6.421 10 N -0.370 5.370 11 C 0.046 3.954 12 H 0.106 0.894 13 C -0.218 4.218 14 C -0.161 4.161 15 C 0.004 3.996 16 N -0.357 5.357 17 C -0.430 4.430 18 H 0.100 0.900 19 C -0.225 4.225 20 N -0.576 5.576 21 Si 0.902 3.098 22 H -0.222 1.222 23 H -0.220 1.220 24 H -0.213 1.213 25 C -0.018 4.018 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.233 0.767 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.116 0.884 43 H 0.060 0.940 44 H 0.054 0.946 45 H 0.070 0.930 46 H 0.064 0.936 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.613 -12.024 11.154 25.566 hybrid contribution -1.731 0.576 -0.839 2.008 sum -21.343 -11.448 10.315 26.325 Atomic orbital electron populations 1.21779 0.96024 1.01497 1.01706 1.21527 0.95625 0.97000 1.02189 1.21693 0.95244 0.96845 1.02078 1.21410 0.94592 0.94282 1.03544 1.21337 0.92188 0.99236 1.00451 0.88768 1.21835 1.02102 1.00472 0.95972 1.20645 0.89816 0.83738 0.75632 1.90685 1.70301 1.31462 1.49608 1.46108 1.07928 1.08523 1.74449 1.20985 0.79135 0.98973 0.96292 0.89372 1.22130 1.02061 1.01721 0.95860 1.23576 0.98758 0.96454 0.97325 1.22285 0.89444 0.96369 0.91492 1.45973 1.08477 1.49898 1.31344 1.20152 0.91830 1.18439 1.12596 0.90008 1.25745 0.92855 1.00210 1.03654 1.70914 1.37642 1.36535 1.12521 0.83723 0.75556 0.75785 0.74722 1.22193 1.22047 1.21306 1.22734 0.93626 0.95842 0.89559 0.92839 0.92801 0.92902 0.91969 0.92031 0.92082 0.91685 0.91270 0.91199 0.91354 0.91997 0.91942 0.76722 0.92603 0.92503 0.91364 0.88378 0.93958 0.94623 0.92968 0.93619 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16 2 C -0.13 -0.87 5.93 -26.73 -0.16 -1.03 16 3 C -0.12 -0.85 4.97 -26.73 -0.13 -0.99 16 4 C -0.10 -0.92 4.03 -26.73 -0.11 -1.03 16 5 C -0.11 -0.99 2.72 -91.77 -0.25 -1.24 16 6 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 7 C -0.15 -1.16 8.84 37.16 0.33 -0.83 16 8 C 0.52 6.51 7.12 -10.99 -0.08 6.43 16 9 O -0.54 -9.00 15.58 5.56 0.09 -8.92 16 10 N -0.72 -8.51 4.84 -53.81 -0.26 -8.77 16 11 C 0.15 2.14 2.35 -67.93 -0.16 1.98 16 12 H 0.09 1.45 7.41 -51.93 -0.38 1.07 16 13 C -0.16 -2.03 9.48 37.16 0.35 -1.67 16 14 C -0.14 -2.32 3.52 -89.97 -0.32 -2.64 16 15 C 0.13 2.53 8.12 -8.50 -0.07 2.46 16 16 N -0.63 -15.59 3.69 -184.59 -0.68 -16.27 16 17 C -0.30 -8.87 11.08 -15.06 -0.17 -9.04 16 18 H 0.08 2.51 8.06 -52.48 -0.42 2.08 16 19 C -0.03 -0.78 5.50 -17.43 -0.10 -0.88 16 20 N -0.93 -29.80 13.70 55.49 0.76 -29.04 16 21 Si 1.07 27.06 25.16 -169.99 -4.28 22.78 16 22 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 23 H -0.29 -6.92 6.51 56.52 0.37 -6.56 16 24 H -0.29 -6.79 6.21 56.52 0.35 -6.44 16 25 C 0.11 2.28 5.27 -8.37 -0.04 2.23 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.30 8.14 -51.92 -0.42 -0.13 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.43 6.57 -51.93 -0.34 0.09 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.72 7.95 -51.93 -0.41 0.31 16 35 H 0.07 0.43 6.57 -51.93 -0.34 0.09 16 36 H 0.06 0.46 7.56 -51.93 -0.39 0.06 16 37 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 38 H 0.40 3.80 8.02 -40.82 -0.33 3.47 16 39 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.10 1.53 8.14 -51.93 -0.42 1.10 16 43 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.04 0.70 8.10 -51.93 -0.42 0.28 16 45 H 0.26 8.19 8.73 -40.82 -0.36 7.84 16 46 H 0.05 0.96 7.50 -51.93 -0.39 0.57 16 47 H 0.05 1.17 4.72 -51.93 -0.25 0.92 16 LS Contribution 366.83 15.07 5.53 5.53 Total: -1.00 -33.84 366.83 -8.21 -42.05 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -8.83 Total: -0.58 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -0.53 Total: -6.79 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: -0.18 Total: -54.08 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.09 Total: -8.92 kcal Atomic # 14 Polarization: 27.06 SS G_CDS: -4.28 Total: 22.78 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.84 -8.21 -42.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755374091.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.978 kcal (2) G-P(sol) polarization free energy of solvation -33.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds