Wall clock time and date at job start Tue Mar 31 2020 05:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47187 * 2 1 4 4 C 1.53005 * 109.47236 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47083 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.46930 * 55.00078 * 5 4 3 7 7 C 1.52998 * 109.47060 * 295.00190 * 5 4 3 8 8 C 1.50692 * 109.47118 * 175.00059 * 5 4 3 9 9 O 1.21288 * 120.00095 * 359.97438 * 8 5 4 10 10 N 1.34779 * 120.00146 * 180.02562 * 8 5 4 11 11 C 1.46505 * 120.00068 * 179.97438 * 10 8 5 12 12 H 1.08999 * 109.47291 * 325.00389 * 11 10 8 13 13 C 1.53004 * 109.46668 * 84.99955 * 11 10 8 14 14 C 1.52998 * 109.47088 * 205.00036 * 11 10 8 15 15 C 1.53946 * 113.73910 * 161.82691 * 14 11 10 16 16 N 1.47819 * 86.03300 * 222.08445 * 15 14 11 17 17 C 1.36939 * 134.45658 * 204.64526 * 16 15 14 18 18 H 1.07996 * 120.00102 * 179.86648 * 17 16 15 19 19 C 1.38817 * 119.99516 * 359.86836 * 17 16 15 20 20 N 1.31614 * 120.00646 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99651 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47117 * 59.99362 * 21 19 17 23 23 H 1.48492 * 109.47249 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47237 * 299.99883 * 21 19 17 25 25 C 1.47584 * 91.05151 * 24.54718 * 16 15 14 26 26 H 1.09005 * 109.46925 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47474 * 300.00213 * 1 2 3 28 28 H 1.09002 * 109.46877 * 60.00209 * 1 2 3 29 29 H 1.08999 * 109.47474 * 239.99787 * 2 1 3 30 30 H 1.09004 * 109.47390 * 119.99751 * 2 1 3 31 31 H 1.08995 * 109.47401 * 59.99957 * 3 2 1 32 32 H 1.09002 * 109.47041 * 299.99691 * 3 2 1 33 33 H 1.08996 * 109.46892 * 60.00220 * 4 3 2 34 34 H 1.08993 * 109.46912 * 299.99570 * 4 3 2 35 35 H 1.09002 * 109.47157 * 299.99749 * 7 5 4 36 36 H 1.08992 * 109.47496 * 59.99985 * 7 5 4 37 37 H 1.09004 * 109.47220 * 180.02562 * 7 5 4 38 38 H 0.96995 * 120.00118 * 359.97438 * 10 8 5 39 39 H 1.08994 * 109.47123 * 60.06716 * 13 11 10 40 40 H 1.09000 * 109.46477 * 180.02562 * 13 11 10 41 41 H 1.09002 * 109.47117 * 300.06153 * 13 11 10 42 42 H 1.08999 * 112.94302 * 293.41536 * 14 11 10 43 43 H 1.09000 * 113.76815 * 336.34349 * 15 14 11 44 44 H 1.09000 * 113.77269 * 107.74773 * 15 14 11 45 45 H 0.96999 * 120.00718 * 180.02562 * 20 19 17 46 46 H 1.08997 * 113.77051 * 221.14926 * 25 16 15 47 47 H 1.09002 * 113.86542 * 89.76984 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 -0.0013 6 1 3.6457 3.4243 0.8406 7 6 3.6746 3.5687 -1.3086 8 6 5.5819 2.8869 0.1219 9 8 6.1850 1.8377 0.2028 10 7 6.2549 4.0544 0.1432 11 6 7.7150 4.0562 0.2636 12 1 8.0277 3.2324 0.9051 13 6 8.3410 3.8893 -1.1225 14 6 8.1747 5.3814 0.8747 15 6 9.6011 5.3359 1.4520 16 7 9.0561 6.1107 2.5868 17 6 9.5946 6.9665 3.5103 18 1 8.9627 7.4190 4.2601 19 6 10.9527 7.2524 3.4826 20 7 11.7230 6.7006 2.5691 21 14 11.6874 8.4192 4.7428 22 1 11.4620 7.8794 6.1078 23 1 13.1459 8.5560 4.4997 24 1 11.0383 9.7494 4.6234 25 6 7.6991 5.5939 2.3233 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9329 0.9288 -0.8909 34 1 3.9337 0.9286 0.8891 35 1 4.1089 3.0294 -2.1505 36 1 2.5884 3.5673 -1.3978 37 1 4.0383 4.5962 -1.3093 38 1 5.7725 4.8935 0.0789 39 1 8.0292 4.7138 -1.7637 40 1 9.4273 3.8902 -1.0329 41 1 8.0126 2.9457 -1.5583 42 1 7.9921 6.2358 0.2230 43 1 9.9333 4.3339 1.7235 44 1 10.3335 5.8817 0.8572 45 1 12.6721 6.9000 2.5500 46 1 6.9158 6.3453 2.4228 47 1 7.4697 4.6680 2.8507 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755374092.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:33 Heat of formation + Delta-G solvation = -20.239512 kcal Electronic energy + Delta-G solvation = -22468.975684 eV Core-core repulsion = 19266.263918 eV Total energy + Delta-G solvation = -3202.711766 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.00596 -38.17564 -36.49386 -34.72270 -33.61848 -32.10369 -30.43494 -28.65279 -27.45874 -25.48265 -24.76009 -24.04851 -22.70976 -21.30372 -20.71198 -19.90910 -18.89737 -16.91851 -16.71751 -16.07470 -15.84827 -15.12533 -14.78527 -14.43818 -14.14243 -13.90466 -13.66289 -13.49877 -13.37989 -13.13509 -12.80992 -12.44365 -12.25591 -12.07312 -11.85779 -11.57542 -11.51257 -11.38052 -11.19667 -11.15910 -11.12069 -10.86872 -10.83973 -10.66182 -10.65061 -10.33323 -9.99836 -9.79722 -9.47910 -9.34526 -8.79581 -8.74718 -6.85980 -5.75202 -3.07315 2.82184 3.35152 3.40396 3.44321 3.45746 4.46576 4.49146 4.60659 4.68002 4.87346 4.93317 4.96485 5.13832 5.19053 5.22839 5.34081 5.41332 5.43175 5.48511 5.55028 5.57313 5.65230 5.67764 5.71568 5.76566 5.84497 5.85740 5.92139 5.99750 6.04154 6.11379 6.16075 6.24473 6.32072 6.38468 6.47654 6.63277 6.66976 6.86451 7.24125 7.38397 7.57265 7.73347 7.99753 8.43176 9.06155 9.72431 10.62069 11.42030 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033495 B = 0.002817 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.745024 B = 9938.367919 C =10339.017653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.100 4.100 5 C -0.112 4.112 6 H 0.095 0.905 7 C -0.144 4.144 8 C 0.514 3.486 9 O -0.545 6.545 10 N -0.719 5.719 11 C 0.149 3.851 12 H 0.086 0.914 13 C -0.157 4.157 14 C -0.146 4.146 15 C 0.176 3.824 16 N -0.613 5.613 17 C -0.223 4.223 18 H 0.078 0.922 19 C -0.009 4.009 20 N -0.922 5.922 21 Si 0.912 3.088 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.126 3.874 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.397 0.603 39 H 0.052 0.948 40 H 0.069 0.931 41 H 0.052 0.948 42 H 0.088 0.912 43 H 0.028 0.972 44 H 0.074 0.926 45 H 0.254 0.746 46 H 0.040 0.960 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.683 -8.322 -9.373 23.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.138 4.138 5 C -0.134 4.134 6 H 0.113 0.887 7 C -0.202 4.202 8 C 0.300 3.700 9 O -0.422 6.422 10 N -0.369 5.369 11 C 0.045 3.955 12 H 0.104 0.896 13 C -0.215 4.215 14 C -0.166 4.166 15 C 0.050 3.950 16 N -0.339 5.339 17 C -0.351 4.351 18 H 0.096 0.904 19 C -0.205 4.205 20 N -0.569 5.569 21 Si 0.742 3.258 22 H -0.212 1.212 23 H -0.215 1.215 24 H -0.211 1.211 25 C 0.000 4.000 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.231 0.769 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.071 0.929 42 H 0.106 0.894 43 H 0.045 0.955 44 H 0.093 0.907 45 H 0.064 0.936 46 H 0.058 0.942 47 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -18.952 -8.883 -9.149 22.843 hybrid contribution 0.289 1.009 0.789 1.313 sum -18.663 -7.874 -8.360 21.913 Atomic orbital electron populations 1.21780 0.96053 1.01464 1.01696 1.21527 0.95594 0.97039 1.02182 1.21695 0.95311 0.96803 1.02059 1.21402 0.94516 0.94347 1.03524 1.21342 0.92472 0.99185 1.00383 0.88655 1.21815 1.02042 1.00311 0.95988 1.20615 0.89685 0.83870 0.75800 1.90686 1.70365 1.31488 1.49685 1.46165 1.08239 1.08306 1.74196 1.21092 0.78294 0.99294 0.96836 0.89619 1.22097 1.01569 1.01170 0.96672 1.23838 1.01407 0.95056 0.96347 1.22229 0.91141 0.94282 0.87378 1.45994 1.03274 1.49596 1.35029 1.18975 0.91795 1.17199 1.07136 0.90388 1.24785 0.95927 1.00586 0.99211 1.69794 1.04846 1.46680 1.35583 0.86201 0.78155 0.80578 0.80831 1.21217 1.21545 1.21103 1.22523 0.89844 0.95984 0.91677 0.92926 0.92802 0.92855 0.92040 0.91971 0.92006 0.91785 0.91405 0.91101 0.92163 0.91417 0.92131 0.76897 0.92852 0.91206 0.92908 0.89417 0.95454 0.90730 0.93575 0.94218 0.95079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.16 0.37 -0.60 16 2 C -0.13 -0.92 5.93 -26.73 -0.16 -1.08 16 3 C -0.12 -0.91 4.97 -26.73 -0.13 -1.04 16 4 C -0.10 -0.97 4.03 -26.73 -0.11 -1.08 16 5 C -0.11 -1.09 2.72 -91.77 -0.25 -1.34 16 6 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 7 C -0.14 -1.10 8.84 37.16 0.33 -0.77 16 8 C 0.51 6.99 7.12 -10.99 -0.08 6.91 16 9 O -0.54 -9.60 15.58 5.55 0.09 -9.52 16 10 N -0.72 -9.31 4.84 -53.80 -0.26 -9.57 16 11 C 0.15 2.34 2.29 -67.93 -0.16 2.19 16 12 H 0.09 1.57 7.48 -51.93 -0.39 1.18 16 13 C -0.16 -2.25 9.44 37.16 0.35 -1.90 16 14 C -0.15 -2.64 3.35 -89.70 -0.30 -2.94 16 15 C 0.18 4.12 6.98 -2.83 -0.02 4.10 16 16 N -0.61 -15.91 3.70 -177.70 -0.66 -16.57 16 17 C -0.22 -6.36 10.70 -15.06 -0.16 -6.52 16 18 H 0.08 2.14 7.83 -52.49 -0.41 1.72 16 19 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 20 N -0.92 -27.57 11.39 55.49 0.63 -26.93 16 21 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 C 0.13 2.57 8.38 -2.97 -0.02 2.54 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.43 6.56 -51.93 -0.34 0.09 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.81 7.95 -51.93 -0.41 0.39 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.42 6.56 -51.93 -0.34 0.08 16 37 H 0.06 0.42 7.56 -51.93 -0.39 0.03 16 38 H 0.40 4.20 8.02 -40.82 -0.33 3.87 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 43 H 0.03 0.67 8.03 -51.93 -0.42 0.25 16 44 H 0.07 1.92 7.17 -51.93 -0.37 1.55 16 45 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 46 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.03 0.65 8.10 -51.93 -0.42 0.23 16 LS Contribution 374.07 15.07 5.64 5.64 Total: -1.00 -32.63 374.07 -8.90 -41.53 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -8.87 Total: 0.01 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -0.44 Total: -1.89 kcal Atomic # 7 Polarization: -52.79 SS G_CDS: -0.29 Total: -53.07 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.52 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.63 -8.90 -41.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755374092.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.292 kcal (2) G-P(sol) polarization free energy of solvation -32.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds