Wall clock time and date at job start Tue Mar 31 2020 05:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47373 * 2 1 4 4 C 1.52997 * 109.47482 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47482 * 179.97438 * 4 3 2 6 6 H 1.09005 * 109.46892 * 304.99753 * 5 4 3 7 7 C 1.53007 * 109.47267 * 64.99526 * 5 4 3 8 8 C 1.50706 * 109.47441 * 184.99681 * 5 4 3 9 9 O 1.21278 * 119.99561 * 0.02562 * 8 5 4 10 10 N 1.34768 * 119.99924 * 179.97438 * 8 5 4 11 11 C 1.46500 * 119.99743 * 180.02562 * 10 8 5 12 12 H 1.09000 * 109.47659 * 34.99804 * 11 10 8 13 13 C 1.53001 * 109.46866 * 274.99573 * 11 10 8 14 14 C 1.53000 * 109.47093 * 154.99920 * 11 10 8 15 15 C 1.53491 * 114.20581 * 295.13283 * 14 11 10 16 16 N 1.47068 * 87.98931 * 220.34690 * 15 14 11 17 17 C 1.36939 * 136.05910 * 207.08893 * 16 15 14 18 18 H 1.07998 * 120.00182 * 7.79505 * 17 16 15 19 19 C 1.38813 * 119.99786 * 187.79929 * 17 16 15 20 20 N 1.31621 * 119.99915 * 195.16074 * 19 17 16 21 21 Si 1.86804 * 119.99944 * 15.16572 * 19 17 16 22 22 H 1.48513 * 109.46751 * 269.99653 * 21 19 17 23 23 H 1.48495 * 109.47485 * 29.99512 * 21 19 17 24 24 H 1.48502 * 109.47078 * 150.00101 * 21 19 17 25 25 C 1.47064 * 87.88132 * 27.34445 * 16 15 14 26 26 H 1.09000 * 109.46821 * 299.99776 * 1 2 3 27 27 H 1.09000 * 109.47168 * 60.00082 * 1 2 3 28 28 H 1.09001 * 109.47150 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46852 * 239.99442 * 2 1 3 30 30 H 1.09000 * 109.47168 * 119.99918 * 2 1 3 31 31 H 1.08997 * 109.47074 * 59.99796 * 3 2 1 32 32 H 1.09000 * 109.46907 * 300.00078 * 3 2 1 33 33 H 1.08998 * 109.47052 * 59.99254 * 4 3 2 34 34 H 1.09000 * 109.46860 * 299.99796 * 4 3 2 35 35 H 1.09001 * 109.47099 * 180.02562 * 7 5 4 36 36 H 1.08996 * 109.47065 * 300.00092 * 7 5 4 37 37 H 1.08996 * 109.46940 * 60.00146 * 7 5 4 38 38 H 0.96998 * 120.00911 * 359.97438 * 10 8 5 39 39 H 1.09001 * 109.47388 * 304.84112 * 13 11 10 40 40 H 1.08999 * 109.47241 * 64.84153 * 13 11 10 41 41 H 1.09000 * 109.47347 * 184.83771 * 13 11 10 42 42 H 1.09004 * 113.41670 * 68.34300 * 14 11 10 43 43 H 1.09006 * 113.46406 * 105.56897 * 15 14 11 44 44 H 1.09000 * 113.52637 * 335.13768 * 15 14 11 45 45 H 0.96996 * 119.99969 * 354.93710 * 20 19 17 46 46 H 1.08997 * 113.47035 * 87.43951 * 25 16 15 47 47 H 1.09006 * 113.46815 * 217.87607 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0801 2.8849 -0.0013 6 1 3.6451 3.4236 -0.8432 7 6 3.6758 3.5694 1.3060 8 6 5.5820 2.8866 -0.1257 9 8 6.1849 1.8375 -0.2064 10 7 6.2549 4.0541 -0.1483 11 6 7.7148 4.0558 -0.2698 12 1 8.0271 3.2316 -0.9110 13 6 8.3420 3.8899 1.1159 14 6 8.1741 5.3806 -0.8821 15 6 7.7017 5.6041 -2.3253 16 7 9.0298 6.1638 -2.6184 17 6 9.5442 7.0678 -3.5091 18 1 8.8811 7.6446 -4.1369 19 6 10.9179 7.2427 -3.6053 20 7 11.4053 8.2968 -4.2247 21 14 12.0747 5.9819 -2.8558 22 1 12.3751 6.3592 -1.4512 23 1 11.4323 4.6433 -2.8822 24 1 13.3363 5.9411 -3.6380 25 6 9.5634 5.3204 -1.5382 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9562 -0.8900 33 1 3.9330 0.9286 -0.8908 34 1 3.9337 0.9285 0.8891 35 1 4.0388 4.5972 1.3053 36 1 2.5896 3.5682 1.3960 37 1 4.1107 3.0307 2.1478 38 1 5.7726 4.8933 -0.0849 39 1 7.9626 4.6650 1.7817 40 1 8.0847 2.9092 1.5161 41 1 9.4257 3.9771 1.0371 42 1 8.0235 6.2370 -0.2247 43 1 6.8954 6.3327 -2.4101 44 1 7.4922 4.6793 -2.8627 45 1 10.8080 8.9127 -4.6771 46 1 9.8451 4.3202 -1.8672 47 1 10.3432 5.8072 -0.9524 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755374093.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:37 Heat of formation + Delta-G solvation = -13.809463 kcal Electronic energy + Delta-G solvation = -22569.150680 eV Core-core repulsion = 19366.717742 eV Total energy + Delta-G solvation = -3202.432938 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.17482 -38.67320 -36.60029 -34.95590 -33.69125 -32.36316 -30.67175 -28.72634 -27.80509 -25.57756 -25.17228 -24.04095 -22.61392 -21.25213 -20.69461 -20.00475 -19.30004 -17.47746 -17.02353 -16.27196 -15.95545 -15.22582 -15.16271 -14.55483 -14.18389 -14.04804 -13.76428 -13.49267 -13.43451 -13.34929 -13.10332 -12.79705 -12.48586 -12.26632 -11.99378 -11.94431 -11.76478 -11.57368 -11.22669 -11.19472 -11.18005 -11.06533 -10.91260 -10.71619 -10.70609 -10.32561 -10.01917 -9.70116 -9.41909 -9.16751 -8.96446 -8.67976 -7.17724 -6.30500 -3.22477 2.70611 3.20144 3.41906 3.50143 3.64006 4.42644 4.50852 4.59855 4.62079 4.72122 4.81311 4.88195 4.90339 4.99453 5.11729 5.17120 5.24789 5.36145 5.41887 5.44746 5.46109 5.50595 5.57593 5.59917 5.65902 5.69940 5.76950 5.79716 5.86054 5.90515 5.95133 6.07769 6.10155 6.18249 6.20423 6.26220 6.26964 6.35573 6.42911 6.63864 6.93708 7.13529 7.59435 8.23669 8.30484 8.97428 9.50999 10.37964 11.19382 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033012 B = 0.003015 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.977741 B = 9283.420718 C = 9541.772011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.100 4.100 5 C -0.112 4.112 6 H 0.096 0.904 7 C -0.144 4.144 8 C 0.516 3.484 9 O -0.544 6.544 10 N -0.719 5.719 11 C 0.151 3.849 12 H 0.088 0.912 13 C -0.159 4.159 14 C -0.140 4.140 15 C 0.126 3.874 16 N -0.625 5.625 17 C -0.305 4.305 18 H 0.081 0.919 19 C -0.025 4.025 20 N -0.932 5.932 21 Si 1.061 2.939 22 H -0.293 1.293 23 H -0.281 1.281 24 H -0.295 1.295 25 C 0.114 3.886 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.399 0.601 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.067 0.933 42 H 0.098 0.902 43 H 0.042 0.958 44 H 0.034 0.966 45 H 0.261 0.739 46 H 0.046 0.954 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.699 -12.675 13.114 26.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.138 4.138 5 C -0.134 4.134 6 H 0.114 0.886 7 C -0.202 4.202 8 C 0.302 3.698 9 O -0.421 6.421 10 N -0.370 5.370 11 C 0.046 3.954 12 H 0.106 0.894 13 C -0.217 4.217 14 C -0.160 4.160 15 C 0.000 4.000 16 N -0.353 5.353 17 C -0.431 4.431 18 H 0.099 0.901 19 C -0.224 4.224 20 N -0.574 5.574 21 Si 0.893 3.107 22 H -0.220 1.220 23 H -0.207 1.207 24 H -0.222 1.222 25 C -0.013 4.013 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.233 0.767 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.116 0.884 43 H 0.061 0.939 44 H 0.052 0.948 45 H 0.071 0.929 46 H 0.064 0.936 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.550 -13.570 13.126 25.777 hybrid contribution -1.807 0.780 -0.449 2.019 sum -19.357 -12.791 12.677 26.439 Atomic orbital electron populations 1.21781 0.96020 1.01496 1.01714 1.21526 0.95631 0.96996 1.02180 1.21692 0.95240 0.96853 1.02092 1.21403 0.94599 0.94263 1.03534 1.21347 0.92272 0.99281 1.00464 0.88582 1.21819 1.02158 1.00270 0.95934 1.20633 0.89761 0.83758 0.75660 1.90685 1.70366 1.31453 1.49578 1.46108 1.07962 1.08500 1.74420 1.20986 0.78802 0.98646 0.96937 0.89418 1.22123 1.01336 1.01652 0.96612 1.23551 0.99651 0.95930 0.96885 1.22323 0.90588 0.95992 0.91132 1.46202 1.04640 1.45447 1.38962 1.20131 0.92590 1.12975 1.17437 0.90121 1.25793 0.94866 1.00949 1.00756 1.70905 1.37496 1.11793 1.37203 0.83790 0.75731 0.75773 0.75455 1.22023 1.20733 1.22224 1.22640 0.94121 0.95085 0.89420 0.92849 0.92783 0.92903 0.91970 0.92038 0.91759 0.91990 0.91095 0.91380 0.92133 0.91340 0.92136 0.76720 0.92606 0.92544 0.91359 0.88387 0.93946 0.94829 0.92896 0.93610 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 37.16 0.37 -0.56 16 2 C -0.13 -0.88 5.93 -26.73 -0.16 -1.04 16 3 C -0.12 -0.86 4.97 -26.74 -0.13 -0.99 16 4 C -0.10 -0.92 4.03 -26.74 -0.11 -1.02 16 5 C -0.11 -1.01 2.72 -91.77 -0.25 -1.26 16 6 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 7 C -0.14 -1.01 8.85 37.16 0.33 -0.68 16 8 C 0.52 6.52 7.12 -10.99 -0.08 6.44 16 9 O -0.54 -9.01 15.58 5.56 0.09 -8.93 16 10 N -0.72 -8.53 4.85 -53.81 -0.26 -8.79 16 11 C 0.15 2.14 2.34 -67.93 -0.16 1.98 16 12 H 0.09 1.45 7.42 -51.93 -0.39 1.06 16 13 C -0.16 -2.02 9.48 37.16 0.35 -1.67 16 14 C -0.14 -2.31 3.52 -89.97 -0.32 -2.62 16 15 C 0.13 2.46 8.13 -8.52 -0.07 2.39 16 16 N -0.62 -15.48 3.62 -184.61 -0.67 -16.15 16 17 C -0.31 -8.88 11.03 -15.06 -0.17 -9.05 16 18 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 19 C -0.02 -0.74 5.50 -17.43 -0.10 -0.83 16 20 N -0.93 -29.65 13.70 55.49 0.76 -28.88 16 21 Si 1.06 26.90 25.50 -169.99 -4.34 22.57 16 22 H -0.29 -7.05 6.97 56.52 0.39 -6.66 16 23 H -0.28 -6.66 5.66 56.52 0.32 -6.34 16 24 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 25 C 0.11 2.38 5.17 -8.38 -0.04 2.33 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.41 6.57 -51.93 -0.34 0.07 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.76 7.95 -51.93 -0.41 0.35 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.38 7.57 -51.93 -0.39 -0.01 16 36 H 0.07 0.39 6.57 -51.93 -0.34 0.05 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.40 3.82 8.02 -40.82 -0.33 3.49 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 43 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.03 0.66 8.10 -51.93 -0.42 0.24 16 45 H 0.26 8.18 8.73 -40.82 -0.36 7.83 16 46 H 0.05 0.96 6.87 -51.93 -0.36 0.61 16 47 H 0.05 1.14 6.22 -51.93 -0.32 0.82 16 LS Contribution 367.77 15.07 5.54 5.54 Total: -1.00 -33.78 367.77 -8.29 -42.07 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -8.89 Total: -0.85 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: -0.53 Total: -6.58 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: -0.17 Total: -53.82 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.09 Total: -8.93 kcal Atomic # 14 Polarization: 26.90 SS G_CDS: -4.34 Total: 22.57 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.78 -8.29 -42.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755374093.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.265 kcal (2) G-P(sol) polarization free energy of solvation -33.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds