Wall clock time and date at job start Tue Mar 31 2020 05:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47436 * 2 1 4 4 C 1.53001 * 109.47092 * 295.28956 * 3 2 1 5 5 C 1.52999 * 109.47114 * 299.39463 * 4 3 2 6 6 C 1.52998 * 109.47431 * 175.28839 * 3 2 1 7 7 C 1.50696 * 109.47516 * 185.00010 * 6 3 2 8 8 O 1.21280 * 119.99971 * 0.02562 * 7 6 3 9 9 N 1.34770 * 120.00278 * 180.02562 * 7 6 3 10 10 C 1.46505 * 120.00178 * 180.02562 * 9 7 6 11 11 H 1.08998 * 112.84799 * 336.19020 * 10 9 7 12 12 C 1.53780 * 113.61638 * 107.50189 * 10 9 7 13 13 C 1.53782 * 87.08197 * 89.11757 * 12 10 9 14 14 H 1.08998 * 113.68850 * 270.87434 * 13 12 10 15 15 C 1.52996 * 113.61413 * 139.98051 * 13 12 10 16 16 N 1.46504 * 109.47094 * 87.50612 * 15 13 12 17 17 C 1.36927 * 120.00200 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00164 * 359.97438 * 17 16 15 19 19 C 1.38813 * 120.00353 * 180.02562 * 17 16 15 20 20 N 1.31617 * 120.00498 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99891 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47279 * 90.00246 * 21 19 17 23 23 H 1.48497 * 109.47591 * 210.00510 * 21 19 17 24 24 H 1.48508 * 109.47209 * 330.00583 * 21 19 17 25 25 C 1.53780 * 113.61490 * 205.00010 * 10 9 7 26 26 H 1.08994 * 109.46591 * 65.80287 * 1 2 3 27 27 H 1.08993 * 109.47101 * 185.80312 * 1 2 3 28 28 H 1.09004 * 109.46950 * 305.80658 * 1 2 3 29 29 H 1.09002 * 109.47145 * 239.99590 * 2 1 3 30 30 H 1.09007 * 109.47156 * 120.00130 * 2 1 3 31 31 H 1.08999 * 109.47017 * 55.29234 * 3 2 1 32 32 H 1.08999 * 109.46977 * 59.39597 * 4 3 2 33 33 H 1.09001 * 109.47041 * 179.39089 * 4 3 2 34 34 H 1.09005 * 109.46533 * 59.57319 * 5 4 3 35 35 H 1.09001 * 109.46828 * 179.56571 * 5 4 3 36 36 H 1.08993 * 109.47047 * 299.57085 * 5 4 3 37 37 H 1.08995 * 109.47269 * 305.00151 * 6 3 2 38 38 H 1.09003 * 109.46828 * 64.99847 * 6 3 2 39 39 H 0.97002 * 120.00396 * 359.97438 * 9 7 6 40 40 H 1.08994 * 113.61353 * 203.66420 * 12 10 9 41 41 H 1.09001 * 113.60932 * 334.56770 * 12 10 9 42 42 H 1.08997 * 109.47012 * 207.49981 * 15 13 12 43 43 H 1.08993 * 109.47503 * 327.50534 * 15 13 12 44 44 H 0.97001 * 119.99554 * 359.97438 * 16 15 13 45 45 H 0.97002 * 120.00538 * 179.97438 * 20 19 17 46 46 H 1.09007 * 113.61469 * 25.43239 * 25 10 9 47 47 H 1.09003 * 113.61733 * 156.33627 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.6291 2.1287 -1.3043 5 6 2.2459 1.3829 -2.4893 6 6 3.5655 1.4441 0.1185 7 6 4.0583 2.8628 0.2420 8 8 3.2673 3.7822 0.2364 9 7 5.3780 3.1100 0.3588 10 6 5.8570 4.4893 0.4795 11 1 5.1609 5.2171 0.0626 12 6 6.3545 4.8475 1.8898 13 6 7.7390 4.3494 1.4426 14 1 7.8984 3.2851 1.6158 15 6 8.8947 5.2138 1.9505 16 7 9.3099 4.7448 3.2749 17 6 10.3349 5.3707 3.9326 18 1 10.8376 6.2099 3.4749 19 6 10.7286 4.9261 5.1873 20 7 11.7135 5.5280 5.8197 21 14 9.8597 3.4742 5.9788 22 1 10.5458 2.2154 5.5912 23 1 9.8939 3.6220 7.4560 24 1 8.4485 3.4307 5.5182 25 6 7.3070 4.6816 0.0046 26 1 -0.3632 0.4212 -0.9374 27 1 -0.3633 -1.0223 0.1039 28 1 -0.3633 0.6013 0.8335 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6095 1.9801 0.8448 32 1 0.5429 2.1181 -1.3938 33 1 1.9832 3.1596 -1.2996 34 1 1.8977 0.3500 -2.4894 35 1 1.9468 1.8673 -3.4188 36 1 3.3323 1.4001 -2.4037 37 1 3.8619 0.8783 1.0017 38 1 3.9993 0.9848 -0.7697 39 1 6.0107 2.3748 0.3637 40 1 6.3234 5.9154 2.1056 41 1 5.9062 4.2422 2.6777 42 1 9.7344 5.1402 1.2594 43 1 8.5696 6.2519 2.0181 44 1 8.8582 3.9913 3.6862 45 1 11.9885 5.2175 6.6966 46 1 7.6277 3.9423 -0.7295 47 1 7.5364 5.7042 -0.2949 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755479815.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:12 Heat of formation + Delta-G solvation = -30.253153 kcal Electronic energy + Delta-G solvation = -22326.200107 eV Core-core repulsion = 19123.054116 eV Total energy + Delta-G solvation = -3203.145990 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.46430 -38.89284 -37.05184 -34.69382 -33.21048 -31.56638 -31.20294 -30.09615 -27.26312 -25.59998 -25.36857 -23.79854 -23.05586 -21.37218 -20.95788 -19.36159 -19.05698 -17.58954 -17.09500 -16.27035 -15.96429 -15.61878 -14.93526 -14.51378 -14.40779 -14.37696 -13.87060 -13.79706 -13.35983 -13.18326 -12.87813 -12.67910 -12.49953 -12.34653 -12.26790 -12.17352 -11.79638 -11.67453 -11.41942 -11.40250 -10.90274 -10.76548 -10.73572 -10.63373 -10.59434 -10.24043 -10.17725 -9.91743 -9.75109 -9.57231 -9.04332 -8.86541 -7.21071 -5.76089 -3.11024 2.53315 3.03844 3.37064 3.39622 3.44941 4.44199 4.45022 4.55367 4.59392 4.60386 4.67895 4.85885 4.95012 5.01706 5.02060 5.03829 5.14317 5.22269 5.26724 5.36491 5.48382 5.54566 5.56389 5.65051 5.65580 5.69246 5.74016 5.83553 5.85673 5.86141 5.90653 5.95695 6.03410 6.10251 6.11998 6.17801 6.27175 6.32177 6.57725 6.69163 6.83011 7.41139 8.00762 8.14612 8.43290 9.22798 9.95325 10.15640 11.42518 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025651 B = 0.002962 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.295862 B = 9451.712443 C =10200.261622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.071 4.071 4 C -0.128 4.128 5 C -0.156 4.156 6 C -0.143 4.143 7 C 0.515 3.485 8 O -0.538 6.538 9 N -0.713 5.713 10 C 0.116 3.884 11 H 0.099 0.901 12 C -0.141 4.141 13 C -0.119 4.119 14 H 0.086 0.914 15 C 0.166 3.834 16 N -0.756 5.756 17 C -0.243 4.243 18 H 0.090 0.910 19 C 0.002 3.998 20 N -0.935 5.935 21 Si 0.885 3.115 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.277 1.277 25 C -0.136 4.136 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.055 0.945 35 H 0.050 0.950 36 H 0.052 0.948 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.400 0.600 40 H 0.092 0.908 41 H 0.065 0.935 42 H 0.027 0.973 43 H 0.028 0.972 44 H 0.360 0.640 45 H 0.259 0.741 46 H 0.069 0.931 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.486 -11.568 -16.644 28.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.090 4.090 4 C -0.165 4.165 5 C -0.213 4.213 6 C -0.182 4.182 7 C 0.302 3.698 8 O -0.415 6.415 9 N -0.364 5.364 10 C 0.010 3.990 11 H 0.117 0.883 12 C -0.180 4.180 13 C -0.137 4.137 14 H 0.104 0.896 15 C 0.039 3.961 16 N -0.401 5.401 17 C -0.373 4.373 18 H 0.107 0.893 19 C -0.193 4.193 20 N -0.584 5.584 21 Si 0.716 3.284 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.204 1.204 25 C -0.175 4.175 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.110 0.890 38 H 0.114 0.886 39 H 0.234 0.766 40 H 0.111 0.889 41 H 0.084 0.916 42 H 0.045 0.955 43 H 0.046 0.954 44 H 0.192 0.808 45 H 0.069 0.931 46 H 0.088 0.912 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -20.876 -10.731 -16.604 28.752 hybrid contribution -0.032 -1.420 0.830 1.645 sum -20.908 -12.151 -15.773 28.872 Atomic orbital electron populations 1.21787 0.95748 1.01375 1.02043 1.21648 0.96194 0.96224 1.02023 1.20942 0.92641 0.95964 0.99434 1.21687 1.00467 1.01031 0.93305 1.21907 1.00756 1.00429 0.98220 1.21854 0.98037 0.94046 1.04303 1.20701 0.82022 0.91659 0.75441 1.90660 1.54560 1.46647 1.49587 1.45768 1.07516 1.08585 1.74486 1.21919 0.95662 0.83614 0.97783 0.88257 1.23443 0.96087 1.02248 0.96200 1.22808 0.95468 1.00381 0.95073 0.89621 1.20620 0.93148 0.95234 0.87061 1.42703 1.41397 1.38560 1.17433 1.19081 1.07521 1.11762 0.98929 0.89265 1.24683 0.98341 0.99155 0.97157 1.69702 1.30409 1.43002 1.15241 0.86527 0.79450 0.83523 0.78915 1.21146 1.21741 1.20371 1.23295 0.94235 1.02916 0.97047 0.92508 0.92955 0.92685 0.91566 0.92087 0.90414 0.92104 0.89984 0.92639 0.93075 0.92926 0.88976 0.88627 0.76557 0.88940 0.91577 0.95531 0.95394 0.80752 0.93088 0.91201 0.88581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.51 37.16 0.35 -0.63 16 2 C -0.12 -0.82 5.19 -26.73 -0.14 -0.95 16 3 C -0.07 -0.59 1.81 -90.62 -0.16 -0.75 16 4 C -0.13 -1.12 5.21 -26.73 -0.14 -1.26 16 5 C -0.16 -1.14 9.22 37.16 0.34 -0.79 16 6 C -0.14 -1.12 4.95 -27.89 -0.14 -1.26 16 7 C 0.51 5.73 7.55 -10.99 -0.08 5.65 16 8 O -0.54 -7.88 13.57 5.56 0.08 -7.81 16 9 N -0.71 -7.32 5.26 -53.02 -0.28 -7.60 16 10 C 0.12 1.37 4.32 -67.12 -0.29 1.08 16 11 H 0.10 1.27 7.46 -51.93 -0.39 0.89 16 12 C -0.14 -1.97 7.43 -25.92 -0.19 -2.17 16 13 C -0.12 -1.70 3.63 -89.81 -0.33 -2.02 16 14 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 15 C 0.17 3.16 6.10 -4.04 -0.02 3.13 16 16 N -0.76 -18.06 5.41 -59.91 -0.32 -18.38 16 17 C -0.24 -6.97 10.47 -15.06 -0.16 -7.13 16 18 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 19 C 0.00 0.06 5.50 -17.43 -0.10 -0.03 16 20 N -0.94 -29.70 13.97 55.49 0.78 -28.92 16 21 Si 0.89 22.29 27.74 -169.99 -4.71 17.57 16 22 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 24 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 25 C -0.14 -1.53 7.39 -25.92 -0.19 -1.72 16 26 H 0.06 0.36 6.83 -51.93 -0.35 0.01 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.40 6.20 -51.93 -0.32 0.08 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.78 7.95 -51.93 -0.41 0.37 16 32 H 0.06 0.51 6.66 -51.93 -0.35 0.16 16 33 H 0.08 0.93 5.96 -51.93 -0.31 0.62 16 34 H 0.05 0.35 6.32 -51.93 -0.33 0.02 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.05 0.38 6.33 -51.93 -0.33 0.05 16 37 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.10 0.60 6.17 -51.93 -0.32 0.28 16 39 H 0.40 3.25 8.70 -40.82 -0.36 2.89 16 40 H 0.09 1.33 7.90 -51.93 -0.41 0.92 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.03 0.54 7.84 -51.93 -0.41 0.14 16 44 H 0.36 8.39 5.53 -40.82 -0.23 8.17 16 45 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 46 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.10 1.04 8.10 -51.93 -0.42 0.62 16 LS Contribution 362.57 15.07 5.46 5.46 Total: -1.00 -33.24 362.57 -8.57 -41.81 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -8.32 Total: 6.72 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -1.25 Total: -8.86 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: 0.17 Total: -54.90 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: 0.08 Total: -7.81 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.71 Total: 17.57 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.24 -8.57 -41.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755479815.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.561 kcal (2) G-P(sol) polarization free energy of solvation -33.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds