Wall clock time and date at job start Tue Mar 31 2020 06:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46904 * 2 1 4 4 C 1.52995 * 109.46992 * 119.99878 * 2 1 3 5 5 H 1.09005 * 109.47189 * 299.99933 * 4 2 1 6 6 C 1.52999 * 109.47197 * 60.00301 * 4 2 1 7 7 C 1.53005 * 109.47150 * 185.00058 * 6 4 2 8 8 N 1.46493 * 109.47092 * 180.02562 * 7 6 4 9 9 C 1.34773 * 120.00230 * 179.97438 * 8 7 6 10 10 O 1.21288 * 119.99704 * 359.97438 * 9 8 7 11 11 C 1.50697 * 120.00393 * 179.97438 * 9 8 7 12 12 C 1.53005 * 109.47591 * 180.02562 * 11 9 8 13 13 C 1.53778 * 113.61217 * 274.14398 * 12 11 9 14 14 C 1.53957 * 87.01713 * 220.04446 * 13 12 11 15 15 C 1.53778 * 113.61742 * 176.53079 * 12 11 9 16 16 N 1.46506 * 109.47182 * 180.02562 * 4 2 1 17 17 C 1.36939 * 120.00073 * 84.72333 * 16 4 2 18 18 H 1.08004 * 119.99859 * 0.02562 * 17 16 4 19 19 C 1.38805 * 119.99849 * 180.02562 * 17 16 4 20 20 N 1.31622 * 120.00455 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00168 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47227 * 89.99498 * 21 19 17 23 23 H 1.48496 * 109.47434 * 209.99930 * 21 19 17 24 24 H 1.48507 * 109.46769 * 330.00032 * 21 19 17 25 25 H 1.09001 * 109.47741 * 299.99811 * 1 2 3 26 26 H 1.09008 * 109.47401 * 60.00134 * 1 2 3 27 27 H 1.08997 * 109.47320 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47248 * 240.00191 * 2 1 3 29 29 H 1.09002 * 109.47121 * 179.97438 * 3 2 1 30 30 H 1.09005 * 109.47224 * 299.99663 * 3 2 1 31 31 H 1.09005 * 109.47352 * 60.00022 * 3 2 1 32 32 H 1.08996 * 109.47238 * 304.99606 * 6 4 2 33 33 H 1.09004 * 109.47119 * 65.00146 * 6 4 2 34 34 H 1.09006 * 109.46641 * 299.99859 * 7 6 4 35 35 H 1.09000 * 109.47259 * 59.99588 * 7 6 4 36 36 H 0.97005 * 120.00369 * 359.97438 * 8 7 6 37 37 H 1.08997 * 109.47202 * 300.00442 * 11 9 8 38 38 H 1.09004 * 109.46818 * 60.00419 * 11 9 8 39 39 H 1.08997 * 112.84438 * 45.33401 * 12 11 9 40 40 H 1.09000 * 113.61577 * 334.55830 * 13 12 11 41 41 H 1.08996 * 113.61738 * 105.46775 * 13 12 11 42 42 H 1.09007 * 113.53623 * 270.81331 * 14 13 12 43 43 H 1.09002 * 113.66776 * 139.93169 * 14 13 12 44 44 H 1.09001 * 113.61503 * 254.52935 * 15 12 11 45 45 H 1.08997 * 113.61133 * 25.34964 * 15 12 11 46 46 H 0.97005 * 119.99811 * 265.00126 * 16 4 2 47 47 H 0.97000 * 120.00679 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 1 1.6766 -0.2073 2.1392 6 6 1.5300 -2.1637 1.2492 7 6 1.9347 -2.8477 2.5566 8 7 1.4470 -4.2291 2.5564 9 6 1.6879 -5.0291 3.6139 10 8 2.3089 -4.6054 4.5657 11 6 1.1857 -6.4499 3.6139 12 6 1.5905 -7.1340 4.9213 13 6 2.9998 -7.7482 4.8844 14 6 2.4147 -8.9373 5.6679 15 6 1.0519 -8.5678 5.0587 16 7 3.5050 -0.7207 1.2496 17 6 4.1892 0.3567 1.7459 18 1 3.6488 1.2059 2.1374 19 6 5.5772 0.3574 1.7457 20 7 6.2359 -0.6777 1.2690 21 14 6.5107 1.8267 2.4233 22 1 6.7584 1.6296 3.8742 23 1 7.8081 1.9594 1.7132 24 1 5.7074 3.0593 2.2214 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 0.4437 -2.1651 1.1597 33 1 1.9647 -2.7028 0.4074 34 1 3.0211 -2.8464 2.6462 35 1 1.5001 -2.3087 3.3984 36 1 0.9506 -4.5681 1.7950 37 1 0.0994 -6.4513 3.5248 38 1 1.6201 -6.9887 2.7718 39 1 1.4076 -6.5130 5.7981 40 1 3.3361 -8.0096 3.8810 41 1 3.7399 -7.1768 5.4445 42 1 2.4585 -8.8097 6.7496 43 1 2.7917 -9.9058 5.3393 44 1 0.2217 -8.6571 5.7594 45 1 0.8533 -9.0531 4.1031 46 1 3.9903 -1.4819 0.8945 47 1 7.2059 -0.6771 1.2685 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755548480.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:43 Heat of formation + Delta-G solvation = -35.118752 kcal Electronic energy + Delta-G solvation = -22517.502157 eV Core-core repulsion = 19314.145179 eV Total energy + Delta-G solvation = -3203.356978 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.87092 -38.33684 -37.35728 -34.57171 -33.03005 -31.47940 -30.41659 -29.19791 -26.35553 -25.70265 -25.31559 -23.63109 -22.69886 -21.06121 -20.26976 -19.44588 -19.15035 -17.16697 -16.78924 -15.95320 -15.58523 -15.27908 -14.92588 -14.52155 -14.02656 -13.91503 -13.80701 -13.43084 -13.12063 -13.00682 -12.56282 -12.52108 -11.99616 -11.94788 -11.67574 -11.60948 -11.52047 -11.15735 -10.89607 -10.74611 -10.73772 -10.55660 -10.43301 -10.39589 -10.29209 -10.24545 -10.02266 -9.92938 -9.48400 -9.42151 -8.81951 -8.71789 -6.90302 -5.72294 -2.99776 2.88922 3.42130 3.46898 3.52284 3.53459 4.46942 4.52639 4.60707 4.63160 4.76501 5.01677 5.24121 5.26823 5.38962 5.39815 5.47022 5.51487 5.57269 5.59289 5.64092 5.73048 5.74633 5.75036 5.82028 5.94428 6.03982 6.04636 6.16726 6.18626 6.26569 6.29246 6.41227 6.42144 6.47560 6.60081 6.70307 6.73355 6.79824 6.85237 7.14661 7.35236 7.74365 7.75686 8.45935 8.48815 9.57409 10.14300 10.49067 11.50255 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015723 B = 0.003702 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.364602 B = 7562.057241 C = 9020.946459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 C -0.141 4.141 4 C 0.186 3.814 5 H 0.048 0.952 6 C -0.135 4.135 7 C 0.122 3.878 8 N -0.732 5.732 9 C 0.506 3.494 10 O -0.536 6.536 11 C -0.132 4.132 12 C -0.094 4.094 13 C -0.135 4.135 14 C -0.143 4.143 15 C -0.138 4.138 16 N -0.721 5.721 17 C -0.231 4.231 18 H 0.072 0.928 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.901 3.099 22 H -0.290 1.290 23 H -0.293 1.293 24 H -0.282 1.282 25 H 0.048 0.952 26 H 0.042 0.958 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.087 0.913 30 H 0.029 0.971 31 H 0.039 0.961 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.061 0.939 36 H 0.395 0.605 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.080 0.920 46 H 0.383 0.617 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.105 -13.075 1.177 19.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.133 4.133 3 C -0.198 4.198 4 C 0.075 3.925 5 H 0.066 0.934 6 C -0.174 4.174 7 C -0.001 4.001 8 N -0.383 5.383 9 C 0.292 3.708 10 O -0.413 6.413 11 C -0.172 4.172 12 C -0.112 4.112 13 C -0.172 4.172 14 C -0.181 4.181 15 C -0.176 4.176 16 N -0.362 5.362 17 C -0.362 4.362 18 H 0.090 0.910 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.732 3.268 22 H -0.218 1.218 23 H -0.219 1.219 24 H -0.208 1.208 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.105 0.895 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.228 0.772 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.117 0.883 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.098 0.902 46 H 0.217 0.783 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.563 -12.589 1.966 18.609 hybrid contribution 0.489 0.493 -0.289 0.752 sum -13.074 -12.096 1.677 17.890 Atomic orbital electron populations 1.21936 0.97172 1.00604 1.00726 1.21775 0.93255 0.97732 1.00504 1.21838 1.04295 0.94854 0.98800 1.20182 0.86017 0.91135 0.95173 0.93382 1.22122 1.00383 0.98221 0.96654 1.21421 1.01157 0.79589 0.97917 1.46172 1.57991 1.13929 1.20258 1.20658 0.79917 0.87661 0.82585 1.90724 1.40012 1.75969 1.34590 1.21703 1.02323 0.93223 0.99934 1.22316 0.96780 0.94710 0.97438 1.22968 0.96860 0.96786 1.00624 1.22830 0.96773 0.98465 0.99984 1.22978 0.97211 0.96316 1.01068 1.42444 0.98929 1.20936 1.73875 1.19193 0.88808 0.96052 1.32177 0.91050 1.24702 0.96474 0.97701 1.02024 1.69650 1.06747 1.29775 1.51866 0.86281 0.79571 0.82338 0.78590 1.21783 1.21924 1.20790 0.93297 0.93848 0.93228 0.92229 0.89469 0.95238 0.94143 0.91622 0.91737 0.89889 0.92091 0.77227 0.89141 0.89076 0.88339 0.90371 0.91074 0.90305 0.91649 0.91607 0.90188 0.78331 0.93622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 8.85 37.16 0.33 -1.67 16 2 C -0.11 -1.89 2.69 -90.62 -0.24 -2.14 16 3 C -0.14 -2.60 8.25 37.16 0.31 -2.29 16 4 C 0.19 3.47 2.02 -67.93 -0.14 3.33 16 5 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 6 C -0.14 -2.05 4.65 -26.73 -0.12 -2.17 16 7 C 0.12 2.04 5.56 -4.04 -0.02 2.02 16 8 N -0.73 -9.80 5.56 -60.29 -0.33 -10.14 16 9 C 0.51 7.38 7.83 -10.99 -0.09 7.30 16 10 O -0.54 -10.43 15.79 5.55 0.09 -10.34 16 11 C -0.13 -1.32 5.52 -27.88 -0.15 -1.47 16 12 C -0.09 -0.99 3.11 -89.81 -0.28 -1.27 16 13 C -0.13 -1.47 7.65 -25.83 -0.20 -1.67 16 14 C -0.14 -1.26 8.09 -25.83 -0.21 -1.46 16 15 C -0.14 -1.13 7.65 -25.92 -0.20 -1.33 16 16 N -0.72 -17.11 4.46 -53.42 -0.24 -17.35 16 17 C -0.23 -6.16 7.56 -15.06 -0.11 -6.28 16 18 H 0.07 1.87 7.37 -52.48 -0.39 1.48 16 19 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 20 N -0.93 -27.93 13.06 55.49 0.72 -27.21 16 21 Si 0.90 22.48 29.55 -169.99 -5.02 17.45 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 23 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.04 0.55 8.14 -51.92 -0.42 0.13 16 27 H 0.05 0.60 6.32 -51.93 -0.33 0.27 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.09 1.92 5.99 -51.93 -0.31 1.61 16 30 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.83 6.17 -51.93 -0.32 0.51 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.08 1.75 7.75 -51.93 -0.40 1.34 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.39 3.89 8.47 -40.82 -0.35 3.54 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.09 0.77 7.88 -51.93 -0.41 0.36 16 39 H 0.10 1.22 7.73 -51.93 -0.40 0.82 16 40 H 0.08 0.81 7.92 -51.93 -0.41 0.40 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.08 0.56 8.10 -51.93 -0.42 0.14 16 46 H 0.38 9.82 7.80 -40.82 -0.32 9.51 16 47 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 370.27 15.07 5.58 5.58 Total: -1.00 -31.43 370.27 -9.12 -40.54 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -8.68 Total: 11.02 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -1.23 Total: -9.56 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: 0.15 Total: -54.69 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.09 Total: -10.34 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.43 -9.12 -40.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755548480.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.425 kcal (2) G-P(sol) polarization free energy of solvation -31.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds