Wall clock time and date at job start Tue Mar 31 2020 06:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.52992 * 109.47482 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.46906 * 55.00224 * 4 3 2 6 6 C 1.53002 * 109.47278 * 295.00291 * 4 3 2 7 7 C 1.52998 * 109.47705 * 174.99884 * 4 3 2 8 8 C 1.50699 * 109.47757 * 185.00168 * 7 4 3 9 9 O 1.21280 * 119.99701 * 0.02562 * 8 7 4 10 10 N 1.34771 * 120.00419 * 180.02562 * 8 7 4 11 11 C 1.46506 * 120.00013 * 359.97438 * 10 8 7 12 12 C 1.46500 * 120.00099 * 180.02562 * 10 8 7 13 13 C 1.53786 * 113.61359 * 217.49577 * 12 10 8 14 14 C 1.53781 * 87.08097 * 220.02177 * 13 12 10 15 15 N 1.46495 * 113.69199 * 139.99547 * 14 13 12 16 16 C 1.36931 * 120.00371 * 107.46403 * 15 14 13 17 17 H 1.08008 * 119.99910 * 359.97438 * 16 15 14 18 18 C 1.38808 * 120.00567 * 179.97438 * 16 15 14 19 19 N 1.31624 * 119.99713 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00493 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46630 * 90.00249 * 20 18 16 22 22 H 1.48493 * 109.47415 * 209.99959 * 20 18 16 23 23 H 1.48498 * 109.47155 * 330.00505 * 20 18 16 24 24 C 1.53784 * 87.08424 * 25.43163 * 14 13 12 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 27 27 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 29 29 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 30 30 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 31 31 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 32 32 H 1.09000 * 109.46593 * 299.99796 * 6 4 3 33 33 H 1.08998 * 109.46891 * 59.99794 * 6 4 3 34 34 H 1.09004 * 109.47334 * 179.97438 * 6 4 3 35 35 H 1.08998 * 109.47140 * 305.00658 * 7 4 3 36 36 H 1.09001 * 109.46898 * 64.99635 * 7 4 3 37 37 H 1.08996 * 109.47254 * 89.99566 * 11 10 8 38 38 H 1.08999 * 109.47389 * 210.00356 * 11 10 8 39 39 H 1.09008 * 109.46771 * 330.00180 * 11 10 8 40 40 H 1.08996 * 112.85121 * 348.80124 * 12 10 8 41 41 H 1.09001 * 113.61461 * 334.56681 * 13 12 10 42 42 H 1.09001 * 113.61496 * 105.46880 * 13 12 10 43 43 H 1.09006 * 113.61088 * 270.88340 * 14 13 12 44 44 H 0.97002 * 119.99524 * 287.45764 * 15 14 13 45 45 H 0.97001 * 119.99834 * 179.97438 * 19 18 16 46 46 H 1.08991 * 113.61288 * 220.02449 * 24 14 13 47 47 H 1.08996 * 113.61208 * 89.11527 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9329 0.8533 -0.8427 6 6 4.0805 0.8327 1.3064 7 6 4.0799 2.8796 -0.1264 8 6 5.5817 2.8707 -0.2506 9 8 6.1848 1.8186 -0.2401 10 7 6.2547 4.0319 -0.3733 11 6 5.5261 5.3029 -0.3866 12 6 7.7146 4.0232 -0.4946 13 6 8.4010 5.1846 0.2436 14 6 9.3514 5.2850 -0.9612 15 7 9.6689 6.6620 -1.3474 16 6 10.9121 7.1757 -1.0910 17 1 11.6585 6.5658 -0.6037 18 6 11.2131 8.4803 -1.4574 19 7 10.3037 9.2234 -2.0517 20 14 12.9087 9.1813 -1.1071 21 1 13.8031 8.9140 -2.2621 22 1 12.8036 10.6468 -0.8913 23 1 13.4675 8.5405 0.1104 24 6 8.2281 4.6533 -1.8002 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 3.7175 1.4221 2.1484 33 1 3.7173 -0.1910 1.3959 34 1 5.1706 0.8324 1.3057 35 1 3.6448 3.3434 -1.0117 36 1 3.7918 3.4461 0.7592 37 1 5.4299 5.6772 0.6325 38 1 6.0718 6.0283 -0.9901 39 1 4.5345 5.1488 -0.8122 40 1 8.1514 3.0482 -0.2791 41 1 7.7630 6.0593 0.3704 42 1 8.8963 4.8833 1.1667 43 1 10.2369 4.6555 -0.8724 44 1 8.9985 7.2098 -1.7848 45 1 10.5139 10.1352 -2.3074 46 1 8.5838 3.9231 -2.5269 47 1 7.5428 5.3826 -2.2320 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755854302.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:20 Heat of formation + Delta-G solvation = -28.346644 kcal Electronic energy + Delta-G solvation = -22390.114524 eV Core-core repulsion = 19187.051206 eV Total energy + Delta-G solvation = -3203.063318 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.24934 -38.35377 -36.72831 -34.75221 -33.20655 -32.75359 -30.04627 -28.12147 -26.94952 -26.78497 -25.12498 -24.42168 -22.86660 -21.68748 -20.24131 -19.17692 -18.70919 -17.10029 -17.00701 -16.24595 -15.88216 -15.47779 -14.69996 -14.56035 -14.20718 -14.14212 -13.77481 -13.47113 -13.18949 -12.99920 -12.77992 -12.52991 -12.26681 -12.22153 -12.01065 -11.80891 -11.77227 -11.63556 -11.25335 -11.15624 -10.92247 -10.86831 -10.75967 -10.63702 -10.55265 -10.45310 -10.25791 -9.98315 -9.67462 -9.41602 -8.91002 -8.38348 -7.00161 -5.81711 -3.10471 2.72301 3.13268 3.41381 3.46972 3.48304 4.41415 4.55429 4.57014 4.64542 4.86077 4.89979 5.02830 5.11121 5.14694 5.21262 5.29166 5.33007 5.41046 5.44587 5.46739 5.46893 5.55872 5.56657 5.65007 5.70980 5.76818 5.78451 5.85888 5.92442 5.94831 5.97411 6.05323 6.16818 6.25997 6.28930 6.34035 6.38005 6.48728 6.56569 6.82855 7.04377 7.58532 7.67400 8.30542 8.36871 9.48165 10.04919 10.39658 11.40668 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.053006 B = 0.002578 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.118539 B =10858.957253 C =11103.353419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.115 4.115 4 C -0.076 4.076 5 H 0.077 0.923 6 C -0.153 4.153 7 C -0.136 4.136 8 C 0.511 3.489 9 O -0.544 6.544 10 N -0.601 5.601 11 C 0.075 3.925 12 C 0.116 3.884 13 C -0.174 4.174 14 C 0.169 3.831 15 N -0.710 5.710 16 C -0.243 4.243 17 H 0.072 0.928 18 C -0.013 4.013 19 N -0.933 5.933 20 Si 0.908 3.092 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C -0.163 4.163 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.045 0.955 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.056 0.944 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.113 0.887 41 H 0.082 0.918 42 H 0.059 0.941 43 H 0.079 0.921 44 H 0.385 0.615 45 H 0.256 0.744 46 H 0.063 0.937 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.667 -14.186 4.551 23.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.153 4.153 4 C -0.095 4.095 5 H 0.095 0.905 6 C -0.210 4.210 7 C -0.176 4.176 8 C 0.299 3.701 9 O -0.422 6.422 10 N -0.332 5.332 11 C -0.068 4.068 12 C 0.013 3.987 13 C -0.216 4.216 14 C 0.056 3.944 15 N -0.348 5.348 16 C -0.375 4.375 17 H 0.090 0.910 18 C -0.209 4.209 19 N -0.581 5.581 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.203 4.203 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.130 0.870 41 H 0.101 0.899 42 H 0.078 0.922 43 H 0.097 0.903 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.082 0.918 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.144 -14.651 4.595 23.769 hybrid contribution 0.574 0.888 0.028 1.057 sum -17.570 -13.763 4.623 22.793 Atomic orbital electron populations 1.21782 0.96094 1.01442 1.01685 1.21573 0.95504 0.97027 1.02273 1.21681 0.94791 0.96913 1.01901 1.20907 0.94308 0.94421 0.99854 0.90472 1.21986 1.03192 1.00015 0.95845 1.21799 0.92556 0.99428 1.03851 1.20690 0.90042 0.83432 0.75919 1.90632 1.70426 1.30626 1.50545 1.47920 1.07409 1.06186 1.71711 1.21788 0.96630 0.86258 1.02157 1.22577 0.78025 1.00000 0.98127 1.24309 1.00068 0.96942 1.00299 1.21345 0.93415 0.87890 0.91703 1.42349 1.13752 1.08454 1.70204 1.19315 0.90110 0.95732 1.32297 0.91002 1.24768 0.98057 0.96863 1.01252 1.69659 1.33296 1.08962 1.46191 0.86172 0.83856 0.78188 0.77871 1.21676 1.21772 1.20703 1.23918 0.99712 0.99915 0.96753 0.92939 0.92855 0.92844 0.91706 0.92050 0.92055 0.91986 0.93542 0.92887 0.90662 0.89133 0.89146 0.92533 0.90107 0.91350 0.86954 0.89925 0.92241 0.90322 0.78136 0.93464 0.91844 0.90151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.16 0.37 -0.59 16 2 C -0.13 -0.91 5.69 -26.73 -0.15 -1.06 16 3 C -0.12 -0.86 4.68 -26.74 -0.13 -0.99 16 4 C -0.08 -0.73 2.04 -90.62 -0.18 -0.91 16 5 H 0.08 0.86 7.95 -51.93 -0.41 0.45 16 6 C -0.15 -1.57 8.69 37.16 0.32 -1.25 16 7 C -0.14 -1.32 3.73 -27.88 -0.10 -1.42 16 8 C 0.51 6.95 7.39 -10.99 -0.08 6.87 16 9 O -0.54 -9.13 13.45 5.56 0.07 -9.05 16 10 N -0.60 -8.16 3.08 -172.99 -0.53 -8.69 16 11 C 0.07 0.82 8.85 59.85 0.53 1.35 16 12 C 0.12 1.81 4.21 -67.11 -0.28 1.53 16 13 C -0.17 -2.98 7.31 -25.92 -0.19 -3.17 16 14 C 0.17 3.32 4.48 -67.12 -0.30 3.02 16 15 N -0.71 -17.43 5.40 -52.64 -0.28 -17.72 16 16 C -0.24 -6.67 9.97 -15.06 -0.15 -6.82 16 17 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 18 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 19 N -0.93 -27.71 13.06 55.49 0.72 -26.99 16 20 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C -0.16 -2.73 7.37 -25.91 -0.19 -2.92 16 25 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.48 6.57 -51.93 -0.34 0.14 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.49 6.57 -51.93 -0.34 0.15 16 34 H 0.07 0.98 5.95 -51.93 -0.31 0.67 16 35 H 0.09 0.74 7.40 -51.93 -0.38 0.35 16 36 H 0.09 0.75 8.11 -51.93 -0.42 0.33 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.99 6.33 -51.93 -0.33 0.66 16 39 H 0.07 0.57 6.44 -51.92 -0.33 0.23 16 40 H 0.11 1.85 7.23 -51.93 -0.38 1.48 16 41 H 0.08 1.44 6.72 -51.93 -0.35 1.09 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.08 1.55 8.10 -51.93 -0.42 1.13 16 44 H 0.38 9.94 7.92 -40.82 -0.32 9.62 16 45 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.08 1.35 6.89 -51.93 -0.36 1.00 16 LS Contribution 365.42 15.07 5.51 5.51 Total: -1.00 -30.80 365.42 -8.64 -39.45 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -8.47 Total: 7.19 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: -0.64 Total: -6.85 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: -0.09 Total: -53.40 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.07 Total: -9.05 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.80 -8.64 -39.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755854302.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.099 kcal (2) G-P(sol) polarization free energy of solvation -30.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds