Wall clock time and date at job start Tue Mar 31 2020 06:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.52992 * 109.47482 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.46906 * 55.00224 * 4 3 2 6 6 C 1.53002 * 109.47278 * 295.00291 * 4 3 2 7 7 C 1.52998 * 109.47705 * 174.99884 * 4 3 2 8 8 C 1.50699 * 109.47757 * 185.00168 * 7 4 3 9 9 O 1.21280 * 119.99701 * 0.02562 * 8 7 4 10 10 N 1.34771 * 120.00419 * 180.02562 * 8 7 4 11 11 C 1.46506 * 120.00013 * 359.97438 * 10 8 7 12 12 C 1.46500 * 120.00099 * 180.02562 * 10 8 7 13 13 C 1.53786 * 113.61359 * 217.49577 * 12 10 8 14 14 C 1.53781 * 87.08097 * 220.02177 * 13 12 10 15 15 N 1.46495 * 113.69199 * 139.99547 * 14 13 12 16 16 C 1.36931 * 120.00371 * 107.46403 * 15 14 13 17 17 H 1.08008 * 119.99910 * 359.97438 * 16 15 14 18 18 C 1.38808 * 120.00567 * 179.97438 * 16 15 14 19 19 N 1.31624 * 119.99713 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00493 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46630 * 90.00249 * 20 18 16 22 22 H 1.48493 * 109.47415 * 209.99959 * 20 18 16 23 23 H 1.48498 * 109.47155 * 330.00505 * 20 18 16 24 24 C 1.53784 * 87.08424 * 25.43163 * 14 13 12 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 27 27 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 29 29 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 30 30 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 31 31 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 32 32 H 1.09000 * 109.46593 * 299.99796 * 6 4 3 33 33 H 1.08998 * 109.46891 * 59.99794 * 6 4 3 34 34 H 1.09004 * 109.47334 * 179.97438 * 6 4 3 35 35 H 1.08998 * 109.47140 * 305.00658 * 7 4 3 36 36 H 1.09001 * 109.46898 * 64.99635 * 7 4 3 37 37 H 1.08996 * 109.47254 * 89.99566 * 11 10 8 38 38 H 1.08999 * 109.47389 * 210.00356 * 11 10 8 39 39 H 1.09008 * 109.46771 * 330.00180 * 11 10 8 40 40 H 1.08996 * 112.85121 * 348.80124 * 12 10 8 41 41 H 1.09001 * 113.61461 * 334.56681 * 13 12 10 42 42 H 1.09001 * 113.61496 * 105.46880 * 13 12 10 43 43 H 1.09006 * 113.61088 * 270.88340 * 14 13 12 44 44 H 0.97002 * 119.99524 * 287.45764 * 15 14 13 45 45 H 0.97001 * 119.99834 * 179.97438 * 19 18 16 46 46 H 1.08991 * 113.61288 * 220.02449 * 24 14 13 47 47 H 1.08996 * 113.61208 * 89.11527 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9329 0.8533 -0.8427 6 6 4.0805 0.8327 1.3064 7 6 4.0799 2.8796 -0.1264 8 6 5.5817 2.8707 -0.2506 9 8 6.1848 1.8186 -0.2401 10 7 6.2547 4.0319 -0.3733 11 6 5.5261 5.3029 -0.3866 12 6 7.7146 4.0232 -0.4946 13 6 8.4010 5.1846 0.2436 14 6 9.3514 5.2850 -0.9612 15 7 9.6689 6.6620 -1.3474 16 6 10.9121 7.1757 -1.0910 17 1 11.6585 6.5658 -0.6037 18 6 11.2131 8.4803 -1.4574 19 7 10.3037 9.2234 -2.0517 20 14 12.9087 9.1813 -1.1071 21 1 13.8031 8.9140 -2.2621 22 1 12.8036 10.6468 -0.8913 23 1 13.4675 8.5405 0.1104 24 6 8.2281 4.6533 -1.8002 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 3.7175 1.4221 2.1484 33 1 3.7173 -0.1910 1.3959 34 1 5.1706 0.8324 1.3057 35 1 3.6448 3.3434 -1.0117 36 1 3.7918 3.4461 0.7592 37 1 5.4299 5.6772 0.6325 38 1 6.0718 6.0283 -0.9901 39 1 4.5345 5.1488 -0.8122 40 1 8.1514 3.0482 -0.2791 41 1 7.7630 6.0593 0.3704 42 1 8.8963 4.8833 1.1667 43 1 10.2369 4.6555 -0.8724 44 1 8.9985 7.2098 -1.7848 45 1 10.5139 10.1352 -2.3074 46 1 8.5838 3.9231 -2.5269 47 1 7.5428 5.3826 -2.2320 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755854302.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:19 Heat of formation + Delta-G solvation = -45.744161 kcal Electronic energy + Delta-G solvation = -22390.868937 eV Core-core repulsion = 19187.051206 eV Total energy + Delta-G solvation = -3203.817731 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.39085 -39.62330 -37.53980 -36.15315 -34.86960 -33.50511 -31.94352 -29.01622 -27.95715 -27.43499 -26.59318 -26.16889 -24.16031 -22.60555 -21.06205 -20.51501 -19.87668 -19.04366 -18.12804 -17.39998 -16.83612 -16.41731 -16.23937 -15.99108 -15.36964 -15.01976 -14.95963 -14.68045 -14.31110 -14.11307 -13.98997 -13.51936 -13.26281 -13.24240 -13.13582 -13.06457 -12.85261 -12.76537 -12.54206 -12.30072 -12.22855 -12.14531 -11.98165 -11.80172 -11.68307 -11.59021 -11.45341 -11.39314 -11.23481 -10.88712 -10.54444 -9.53639 -8.99509 -7.95403 -5.23587 1.48136 1.49064 1.57559 1.68044 2.07707 2.56762 3.36171 3.56328 3.77732 3.81776 3.81955 3.94735 3.99611 4.15528 4.25606 4.27894 4.30285 4.35409 4.44764 4.57696 4.66447 4.72558 4.75332 4.77683 4.82601 4.84902 4.87767 4.95599 4.98580 5.01833 5.08750 5.09380 5.13106 5.21804 5.27912 5.33451 5.43746 5.46194 5.52005 5.57951 5.61067 5.69376 6.26716 6.52255 7.24948 7.33398 8.08113 8.32558 9.27568 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.053006 B = 0.002578 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.118539 B =10858.957253 C =11103.353419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C -0.108 4.108 4 C -0.074 4.074 5 H 0.056 0.944 6 C -0.150 4.150 7 C -0.129 4.129 8 C 0.504 3.496 9 O -0.582 6.582 10 N -0.603 5.603 11 C 0.071 3.929 12 C 0.131 3.869 13 C -0.160 4.160 14 C 0.152 3.848 15 N -0.722 5.722 16 C -0.245 4.245 17 H 0.075 0.925 18 C -0.075 4.075 19 N -0.967 5.967 20 Si 0.972 3.028 21 H -0.288 1.288 22 H -0.295 1.295 23 H -0.271 1.271 24 C -0.150 4.150 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.044 0.956 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.081 0.919 42 H 0.061 0.939 43 H 0.075 0.925 44 H 0.375 0.625 45 H 0.251 0.749 46 H 0.065 0.935 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.278 -14.429 5.216 25.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C -0.145 4.145 4 C -0.093 4.093 5 H 0.075 0.925 6 C -0.208 4.208 7 C -0.169 4.169 8 C 0.295 3.705 9 O -0.462 6.462 10 N -0.334 5.334 11 C -0.071 4.071 12 C 0.027 3.973 13 C -0.201 4.201 14 C 0.042 3.958 15 N -0.360 5.360 16 C -0.377 4.377 17 H 0.093 0.907 18 C -0.267 4.267 19 N -0.618 5.618 20 Si 0.801 3.199 21 H -0.216 1.216 22 H -0.222 1.222 23 H -0.196 1.196 24 C -0.190 4.190 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.100 0.900 42 H 0.080 0.920 43 H 0.093 0.907 44 H 0.208 0.792 45 H 0.060 0.940 46 H 0.084 0.916 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -19.777 -14.935 5.282 25.339 hybrid contribution 1.051 0.856 -0.162 1.366 sum -18.725 -14.078 5.120 23.980 Atomic orbital electron populations 1.21765 0.95201 1.01785 1.02074 1.21581 0.96277 0.96918 1.01804 1.21623 0.92836 0.97194 1.02875 1.20876 0.95823 0.94082 0.98504 0.92540 1.21935 1.01123 1.00832 0.96860 1.21856 0.89198 0.99920 1.05879 1.21447 0.91688 0.82592 0.74777 1.90627 1.71520 1.31970 1.52093 1.47984 1.06434 1.07449 1.71558 1.21984 0.97652 0.84608 1.02905 1.22187 0.79882 0.98743 0.96525 1.24068 0.99276 0.97552 0.99250 1.21626 0.94513 0.85759 0.93942 1.42474 1.12761 1.10126 1.70606 1.19683 0.91155 0.95840 1.30975 0.90660 1.25542 1.01572 0.97485 1.02103 1.69802 1.35065 1.08979 1.47927 0.85164 0.79797 0.77036 0.77903 1.21565 1.22173 1.19550 1.23760 0.98461 0.99651 0.97122 0.92708 0.92374 0.92510 0.92071 0.92740 0.91073 0.90913 0.92383 0.92375 0.93726 0.86809 0.86953 0.91455 0.91552 0.88055 0.87832 0.90041 0.92049 0.90681 0.79217 0.93996 0.91580 0.89997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 71.98 0.71 -0.86 16 2 C -0.13 -1.63 5.69 30.59 0.17 -1.45 16 3 C -0.11 -1.32 4.68 30.59 0.14 -1.18 16 4 C -0.07 -1.28 2.04 -10.80 -0.02 -1.30 16 5 H 0.06 1.22 7.95 -2.39 -0.02 1.20 16 6 C -0.15 -2.93 8.69 71.98 0.63 -2.30 16 7 C -0.13 -2.12 3.73 29.85 0.11 -2.01 16 8 C 0.50 12.97 7.39 87.66 0.65 13.62 16 9 O -0.58 -19.42 13.45 -3.03 -0.04 -19.46 16 10 N -0.60 -15.39 3.08 -819.62 -2.53 -17.92 16 11 C 0.07 1.37 8.85 127.77 1.13 2.50 16 12 C 0.13 4.00 4.21 45.52 0.19 4.19 16 13 C -0.16 -5.37 7.31 31.12 0.23 -5.14 16 14 C 0.15 5.96 4.48 45.52 0.20 6.16 16 15 N -0.72 -35.74 5.40 -320.45 -1.73 -37.47 16 16 C -0.24 -13.45 9.97 84.03 0.84 -12.61 16 17 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 18 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 19 N -0.97 -58.19 13.06 21.65 0.28 -57.90 16 20 Si 0.97 45.80 29.55 68.60 2.03 47.83 16 21 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 22 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 23 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 24 C -0.15 -4.97 7.37 31.12 0.23 -4.74 16 25 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 0.81 6.57 -2.39 -0.02 0.80 16 29 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.06 1.03 6.57 -2.39 -0.02 1.02 16 34 H 0.04 1.16 5.95 -2.38 -0.01 1.14 16 35 H 0.11 1.39 7.40 -2.39 -0.02 1.37 16 36 H 0.11 1.41 8.11 -2.39 -0.02 1.39 16 37 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.07 1.51 6.33 -2.39 -0.02 1.50 16 39 H 0.10 1.30 6.44 -2.38 -0.02 1.28 16 40 H 0.10 3.40 7.23 -2.39 -0.02 3.38 16 41 H 0.08 2.78 6.72 -2.39 -0.02 2.76 16 42 H 0.06 2.02 8.14 -2.39 -0.02 2.01 16 43 H 0.08 2.97 8.10 -2.38 -0.02 2.95 16 44 H 0.38 19.71 7.92 -92.71 -0.73 18.97 16 45 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 46 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.08 2.71 6.89 -2.39 -0.02 2.69 16 Total: -1.00 -66.71 365.42 3.89 -62.82 By element: Atomic # 1 Polarization: 30.80 SS G_CDS: 0.20 Total: 31.00 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: 5.68 Total: -8.89 kcal Atomic # 7 Polarization: -109.32 SS G_CDS: -3.98 Total: -113.29 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.04 Total: -19.46 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -66.71 3.89 -62.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755854302.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.077 kcal (2) G-P(sol) polarization free energy of solvation -66.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds