Wall clock time and date at job start Tue Mar 31 2020 06:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.46638 * 2 1 4 4 C 1.52999 * 109.46906 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47430 * 305.00722 * 4 3 2 6 6 C 1.53008 * 109.46784 * 65.00123 * 4 3 2 7 7 C 1.52999 * 109.47310 * 185.00204 * 4 3 2 8 8 C 1.50699 * 109.47462 * 175.00607 * 7 4 3 9 9 O 1.21285 * 119.99580 * 359.97438 * 8 7 4 10 10 N 1.34774 * 120.00321 * 179.97438 * 8 7 4 11 11 C 1.46507 * 119.99713 * 359.97438 * 10 8 7 12 12 C 1.46493 * 120.00184 * 179.97438 * 10 8 7 13 13 C 1.53784 * 113.61553 * 223.62647 * 12 10 8 14 14 C 1.53774 * 87.08060 * 220.01835 * 13 12 10 15 15 N 1.46508 * 113.69085 * 139.99186 * 14 13 12 16 16 C 1.36934 * 120.00045 * 107.46057 * 15 14 13 17 17 H 1.08007 * 120.00264 * 0.02562 * 16 15 14 18 18 C 1.38804 * 120.00132 * 179.97438 * 16 15 14 19 19 N 1.31623 * 120.00312 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 120.00065 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47365 * 89.99566 * 20 18 16 22 22 H 1.48504 * 109.47343 * 209.99982 * 20 18 16 23 23 H 1.48507 * 109.47042 * 329.99935 * 20 18 16 24 24 C 1.53777 * 87.08441 * 25.43310 * 14 13 12 25 25 H 1.09000 * 109.47815 * 59.99772 * 1 2 3 26 26 H 1.08998 * 109.47264 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47357 * 299.99636 * 1 2 3 28 28 H 1.08994 * 109.47300 * 240.00862 * 2 1 3 29 29 H 1.08993 * 109.47492 * 120.00015 * 2 1 3 30 30 H 1.09001 * 109.46878 * 60.00626 * 3 2 1 31 31 H 1.08993 * 109.47191 * 300.00199 * 3 2 1 32 32 H 1.09002 * 109.46885 * 60.00452 * 6 4 3 33 33 H 1.09003 * 109.46794 * 179.97438 * 6 4 3 34 34 H 1.08992 * 109.47205 * 299.99574 * 6 4 3 35 35 H 1.08997 * 109.47147 * 55.00031 * 7 4 3 36 36 H 1.09009 * 109.46905 * 295.00346 * 7 4 3 37 37 H 1.09003 * 109.46991 * 274.18187 * 11 10 8 38 38 H 1.08996 * 109.46889 * 34.18311 * 11 10 8 39 39 H 1.09001 * 109.46602 * 154.18126 * 11 10 8 40 40 H 1.08999 * 112.90823 * 354.87141 * 12 10 8 41 41 H 1.09001 * 113.61219 * 334.57026 * 13 12 10 42 42 H 1.09006 * 113.61335 * 105.46544 * 13 12 10 43 43 H 1.09000 * 113.61695 * 270.87841 * 14 13 12 44 44 H 0.96999 * 119.99943 * 287.46382 * 15 14 13 45 45 H 0.96998 * 119.99747 * 179.97438 * 19 18 16 46 46 H 1.09002 * 113.61494 * 220.02128 * 24 14 13 47 47 H 1.08998 * 113.61763 * 89.11371 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5698 1.4427 0.0006 5 1 3.9329 0.8533 0.8426 6 6 4.0804 0.8329 -1.3065 7 6 4.0798 2.8797 0.1264 8 6 5.5816 2.8708 0.2504 9 8 6.1847 1.8186 0.2398 10 7 6.2546 4.0321 0.3732 11 6 5.5260 5.3031 0.3855 12 6 7.7145 4.0234 0.4943 13 6 8.2490 4.9825 1.5710 14 6 9.3823 5.3264 0.5902 15 7 9.7337 6.7486 0.5719 16 6 10.9082 7.1710 1.1350 17 1 11.5759 6.4557 1.5923 18 6 11.2414 8.5183 1.1173 19 7 12.3706 8.9243 1.6581 20 14 10.0871 9.7555 0.3258 21 1 9.1299 10.2605 1.3428 22 1 10.8754 10.8902 -0.2186 23 1 9.3381 9.0994 -0.7760 24 6 8.4237 4.9142 -0.5393 25 1 -0.3635 0.5138 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6766 1.9564 0.8901 31 1 1.6765 1.9564 -0.8899 32 1 3.7174 1.4223 -2.1485 33 1 5.1704 0.8333 -1.3062 34 1 3.7172 -0.1908 -1.3960 35 1 3.6448 3.3434 1.0118 36 1 3.7917 3.4463 -0.7592 37 1 5.3656 5.6398 -0.6388 38 1 4.5634 5.1653 0.8777 39 1 6.1073 6.0497 0.9266 40 1 8.1287 3.0174 0.5612 41 1 7.5829 5.8197 1.7796 42 1 8.5915 4.4776 2.4743 43 1 10.2526 4.6767 0.6832 44 1 9.1342 7.3910 0.1610 45 1 12.6035 9.8658 1.6453 46 1 8.9072 4.3542 -1.3398 47 1 7.8054 5.7327 -0.9078 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755854303.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:23 Heat of formation + Delta-G solvation = -22.561766 kcal Electronic energy + Delta-G solvation = -22468.114567 eV Core-core repulsion = 19265.302100 eV Total energy + Delta-G solvation = -3202.812467 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.34561 -38.48335 -36.79329 -34.88163 -33.25105 -32.78830 -30.60136 -28.22421 -27.08472 -26.82913 -25.26537 -24.48978 -22.72055 -21.61994 -20.28805 -19.40848 -18.82381 -17.48503 -17.06243 -16.37444 -15.94001 -15.51425 -14.83388 -14.63178 -14.32239 -14.04562 -13.89909 -13.59979 -13.33774 -13.03756 -12.74947 -12.62405 -12.45006 -12.31549 -12.05429 -11.89317 -11.81107 -11.74545 -11.68964 -11.21610 -11.03455 -10.91849 -10.81174 -10.71261 -10.64454 -10.46474 -10.19090 -10.10894 -9.65375 -9.50038 -8.94810 -8.48271 -7.31708 -5.81588 -3.17722 2.64495 3.03723 3.32588 3.34504 3.41121 4.35516 4.49779 4.53845 4.60070 4.80348 4.85407 4.97196 5.00192 5.05125 5.07959 5.20771 5.24398 5.28675 5.35839 5.41399 5.42438 5.46033 5.52193 5.56032 5.60603 5.66339 5.68756 5.74090 5.74891 5.88269 5.91562 6.00804 6.07906 6.12361 6.20211 6.21301 6.31208 6.36123 6.47928 6.69655 6.91063 7.48717 7.94556 8.22572 8.37911 9.15046 9.87387 10.07012 11.36538 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.042043 B = 0.002795 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.820229 B =10016.720787 C =10353.716031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.115 4.115 4 C -0.076 4.076 5 H 0.077 0.923 6 C -0.154 4.154 7 C -0.136 4.136 8 C 0.511 3.489 9 O -0.542 6.542 10 N -0.601 5.601 11 C 0.071 3.929 12 C 0.116 3.884 13 C -0.177 4.177 14 C 0.176 3.824 15 N -0.734 5.734 16 C -0.248 4.248 17 H 0.092 0.908 18 C 0.004 3.996 19 N -0.932 5.932 20 Si 0.885 3.115 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.277 1.277 24 C -0.165 4.165 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.045 0.955 33 H 0.075 0.925 34 H 0.053 0.947 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.055 0.945 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.117 0.883 41 H 0.082 0.918 42 H 0.064 0.936 43 H 0.088 0.912 44 H 0.362 0.638 45 H 0.260 0.740 46 H 0.066 0.934 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.482 -13.685 -4.453 27.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.153 4.153 4 C -0.095 4.095 5 H 0.096 0.904 6 C -0.211 4.211 7 C -0.176 4.176 8 C 0.300 3.700 9 O -0.420 6.420 10 N -0.333 5.333 11 C -0.072 4.072 12 C 0.013 3.987 13 C -0.218 4.218 14 C 0.064 3.936 15 N -0.374 5.374 16 C -0.378 4.378 17 H 0.110 0.890 18 C -0.191 4.191 19 N -0.579 5.579 20 Si 0.715 3.285 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.203 1.203 24 C -0.205 4.205 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.135 0.865 41 H 0.100 0.900 42 H 0.083 0.917 43 H 0.105 0.895 44 H 0.195 0.805 45 H 0.070 0.930 46 H 0.085 0.915 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -22.897 -14.181 -4.346 27.281 hybrid contribution -0.848 1.263 -0.508 1.604 sum -23.745 -12.917 -4.854 27.464 Atomic orbital electron populations 1.21782 0.96082 1.01472 1.01677 1.21572 0.95516 0.96994 1.02298 1.21683 0.94763 0.96952 1.01884 1.20911 0.94338 0.94363 0.99890 0.90442 1.21989 1.03195 1.00064 0.95813 1.21800 0.92463 0.99504 1.03843 1.20697 0.90061 0.83385 0.75856 1.90642 1.70424 1.30591 1.50316 1.47892 1.07357 1.06187 1.71896 1.21832 0.96896 0.86512 1.01952 1.22572 0.77928 1.00146 0.98060 1.24306 1.00555 0.98470 0.98499 1.21320 0.93544 0.86753 0.92024 1.42704 1.23248 1.02142 1.69278 1.19145 0.95759 0.93121 1.29793 0.89036 1.24704 0.97026 0.96790 1.00629 1.69703 1.23233 1.15255 1.49713 0.86549 0.80738 0.81876 0.79344 1.21072 1.21674 1.20343 1.23935 0.99092 0.99159 0.98342 0.92856 0.92911 0.92851 0.91687 0.92031 0.92068 0.91991 0.93549 0.90653 0.92832 0.89139 0.89145 0.92618 0.91345 0.89899 0.86545 0.89996 0.91692 0.89453 0.80522 0.93002 0.91487 0.90355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16 2 C -0.13 -0.87 5.69 -26.73 -0.15 -1.03 16 3 C -0.12 -0.82 4.68 -26.73 -0.13 -0.94 16 4 C -0.08 -0.69 2.04 -90.62 -0.18 -0.88 16 5 H 0.08 0.83 7.95 -51.93 -0.41 0.41 16 6 C -0.15 -1.52 8.69 37.16 0.32 -1.19 16 7 C -0.14 -1.23 3.78 -27.88 -0.11 -1.34 16 8 C 0.51 6.61 7.39 -10.99 -0.08 6.53 16 9 O -0.54 -8.77 13.42 5.55 0.07 -8.69 16 10 N -0.60 -7.66 3.09 -173.00 -0.53 -8.20 16 11 C 0.07 0.71 9.17 59.85 0.55 1.26 16 12 C 0.12 1.71 4.24 -67.12 -0.28 1.43 16 13 C -0.18 -2.85 7.38 -25.92 -0.19 -3.05 16 14 C 0.18 3.27 4.48 -67.12 -0.30 2.97 16 15 N -0.73 -16.85 5.21 -52.64 -0.27 -17.12 16 16 C -0.25 -6.88 10.45 -15.06 -0.16 -7.04 16 17 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 18 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 19 N -0.93 -28.96 13.97 55.49 0.78 -28.19 16 20 Si 0.88 21.61 27.74 -169.99 -4.71 16.89 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.28 -6.33 6.52 56.52 0.37 -5.96 16 24 C -0.17 -2.57 7.42 -25.92 -0.19 -2.76 16 25 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.46 6.57 -51.93 -0.34 0.12 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.95 5.95 -51.93 -0.31 0.64 16 34 H 0.05 0.48 6.57 -51.93 -0.34 0.14 16 35 H 0.09 0.68 7.41 -51.93 -0.38 0.29 16 36 H 0.09 0.70 8.11 -51.92 -0.42 0.28 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.51 6.61 -51.93 -0.34 0.17 16 39 H 0.08 0.90 5.78 -51.93 -0.30 0.60 16 40 H 0.12 1.83 7.18 -51.93 -0.37 1.46 16 41 H 0.08 1.31 5.98 -51.93 -0.31 1.00 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.09 1.67 8.10 -51.93 -0.42 1.25 16 44 H 0.36 8.09 5.79 -40.82 -0.24 7.85 16 45 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 46 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.08 1.19 7.44 -51.93 -0.39 0.80 16 LS Contribution 362.19 15.07 5.46 5.46 Total: -1.00 -31.81 362.19 -8.24 -40.06 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -8.40 Total: 6.35 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -0.63 Total: -6.56 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: -0.03 Total: -53.51 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.07 Total: -8.69 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.71 Total: 16.89 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.81 -8.24 -40.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755854303.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.494 kcal (2) G-P(sol) polarization free energy of solvation -31.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds