Wall clock time and date at job start Tue Mar 31 2020 05:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.47460 * 2 1 4 4 H 1.08995 * 109.46626 * 184.02293 * 3 2 1 5 5 C 1.53031 * 109.46043 * 64.04985 * 3 2 1 6 6 C 1.53117 * 109.27741 * 180.80532 * 5 3 2 7 7 C 1.53121 * 109.15900 * 57.66017 * 6 5 3 8 8 C 1.53036 * 109.27817 * 302.34343 * 7 6 5 9 9 N 1.46848 * 109.52399 * 59.17758 * 8 7 6 10 10 C 1.46901 * 111.00246 * 174.15924 * 9 8 7 11 11 C 1.52993 * 109.47228 * 289.33870 * 10 9 8 12 12 C 1.50703 * 109.47150 * 179.97438 * 11 10 9 13 13 O 1.21278 * 119.99924 * 359.73311 * 12 11 10 14 14 N 1.34780 * 120.00006 * 179.97438 * 12 11 10 15 15 C 1.46500 * 119.99882 * 0.02562 * 14 12 11 16 16 C 1.46491 * 119.99978 * 180.02562 * 14 12 11 17 17 C 1.50701 * 109.47477 * 89.99910 * 16 14 12 18 18 H 1.07999 * 119.99396 * 0.02562 * 17 16 14 19 19 C 1.37874 * 120.00012 * 180.02562 * 17 16 14 20 20 N 1.31514 * 120.00293 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99906 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46816 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47036 * 119.99982 * 21 19 17 24 24 H 1.48500 * 109.46952 * 239.99965 * 21 19 17 25 25 H 1.09005 * 109.47350 * 64.81475 * 1 2 3 26 26 H 1.09001 * 109.47600 * 184.81606 * 1 2 3 27 27 H 1.08999 * 109.47216 * 304.81638 * 1 2 3 28 28 H 1.09000 * 109.47213 * 239.99932 * 2 1 3 29 29 H 1.09004 * 109.47412 * 119.99615 * 2 1 3 30 30 H 1.08999 * 109.50958 * 300.75213 * 5 3 2 31 31 H 1.09005 * 109.49990 * 60.83015 * 5 3 2 32 32 H 1.09000 * 109.52333 * 177.56055 * 6 5 3 33 33 H 1.09000 * 109.52961 * 297.69094 * 6 5 3 34 34 H 1.09001 * 109.50532 * 62.28584 * 7 6 5 35 35 H 1.09000 * 109.50324 * 182.36544 * 7 6 5 36 36 H 1.09004 * 109.46223 * 299.16405 * 8 7 6 37 37 H 1.09000 * 109.46374 * 179.19491 * 8 7 6 38 38 H 1.08998 * 109.46770 * 169.34042 * 10 9 8 39 39 H 1.09000 * 109.46748 * 49.33930 * 10 9 8 40 40 H 1.09005 * 109.47277 * 59.99746 * 11 10 9 41 41 H 1.08997 * 109.47890 * 300.00172 * 11 10 9 42 42 H 1.08994 * 109.47228 * 89.99449 * 15 14 12 43 43 H 1.09003 * 109.47021 * 209.99777 * 15 14 12 44 44 H 1.09004 * 109.47010 * 329.99654 * 15 14 12 45 45 H 1.08996 * 109.47404 * 210.00434 * 16 14 12 46 46 H 1.09008 * 109.46868 * 329.99932 * 16 14 12 47 47 H 0.96999 * 120.00263 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1276 1.4432 -0.0721 5 6 1.6147 2.1337 1.2974 6 6 2.1099 3.5825 1.2842 7 6 1.5441 4.2957 0.0530 8 6 1.9714 3.5419 -1.2084 9 7 1.4731 2.1618 -1.1479 10 6 1.7451 1.4483 -2.4029 11 6 0.8474 2.0039 -3.5102 12 6 1.1268 1.2724 -4.7978 13 8 1.9652 0.3965 -4.8280 14 7 0.4485 1.5948 -5.9170 15 6 -0.5601 2.6568 -5.8818 16 6 0.7197 0.8833 -7.1684 17 6 -0.1842 -0.3184 -7.2693 18 1 -0.8903 -0.5305 -6.4802 19 6 -0.1095 -1.1468 -8.3689 20 7 0.7508 -0.8886 -9.3295 21 14 -1.2304 -2.6359 -8.4942 22 1 -2.0995 -2.7038 -7.2920 23 1 -2.0748 -2.5189 -9.7101 24 1 -0.4075 -3.8691 -8.5798 25 1 -0.3634 0.4373 -0.9300 26 1 -0.3634 -1.0240 0.0863 27 1 -0.3633 0.5867 0.8437 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.5277 2.1213 1.3770 31 1 2.0479 1.6082 2.1485 32 1 1.7721 4.0912 2.1870 33 1 3.1991 3.5949 1.2450 34 1 0.4560 4.3174 0.1129 35 1 1.9269 5.3156 0.0153 36 1 3.0594 3.5325 -1.2750 37 1 1.5583 4.0390 -2.0861 38 1 1.5410 0.3861 -2.2684 39 1 2.7904 1.5854 -2.6795 40 1 1.0513 3.0662 -3.6447 41 1 -0.1980 1.8670 -3.2337 42 1 -0.0892 3.6127 -6.1105 43 1 -1.3343 2.4472 -6.6200 44 1 -1.0073 2.7004 -4.8887 45 1 0.5352 1.5485 -8.0119 46 1 1.7599 0.5578 -7.1832 47 1 0.8035 -1.4717 -10.1029 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034674503.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:15 Heat of formation + Delta-G solvation = -48.677365 kcal Electronic energy + Delta-G solvation = -23287.784951 eV Core-core repulsion = 20083.840027 eV Total energy + Delta-G solvation = -3203.944924 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.81283 -38.70120 -34.85104 -34.23267 -33.87015 -32.57782 -30.19313 -29.15858 -27.68396 -25.83692 -24.91236 -24.31558 -22.98882 -21.50089 -20.92185 -19.25850 -18.25360 -16.55289 -16.50057 -15.83609 -15.37443 -15.31119 -14.93351 -14.66315 -14.47060 -14.28754 -13.97443 -13.29193 -13.09653 -12.93635 -12.57510 -12.29489 -12.20084 -12.14891 -11.96996 -11.78350 -11.57892 -11.49415 -11.18512 -11.14370 -10.98954 -10.93520 -10.83271 -10.55789 -10.54323 -10.30851 -10.13156 -10.02959 -9.58004 -8.84081 -8.41905 -8.27257 -7.59507 -6.02249 -4.06836 3.31118 3.38288 3.42013 3.51101 3.68927 4.19195 4.47455 4.61766 4.65326 4.74097 4.93852 5.11577 5.18205 5.24219 5.28648 5.31867 5.36938 5.40320 5.47337 5.52250 5.57860 5.67873 5.69683 5.73084 5.77384 5.86498 5.88224 5.92827 5.95836 6.03764 6.06928 6.14596 6.18642 6.24008 6.28341 6.30756 6.50617 7.08476 7.12684 7.15945 7.47497 7.58631 7.94636 8.26343 8.47196 8.93464 9.15029 9.58390 11.05850 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025103 B = 0.003707 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.127481 B = 7551.651704 C = 8152.723341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.124 4.124 3 C 0.087 3.913 4 H 0.037 0.963 5 C -0.112 4.112 6 C -0.122 4.122 7 C -0.115 4.115 8 C 0.052 3.948 9 N -0.531 5.531 10 C 0.065 3.935 11 C -0.132 4.132 12 C 0.504 3.496 13 O -0.546 6.546 14 N -0.604 5.604 15 C 0.084 3.916 16 C 0.244 3.756 17 C -0.524 4.524 18 H 0.058 0.942 19 C 0.060 3.940 20 N -0.896 5.896 21 Si 0.898 3.102 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.283 1.283 25 H 0.066 0.934 26 H 0.044 0.956 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.030 0.970 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.040 0.960 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.042 0.958 43 H 0.072 0.928 44 H 0.058 0.942 45 H 0.031 0.969 46 H 0.043 0.957 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.121 10.466 20.083 22.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.161 4.161 3 C -0.021 4.021 4 H 0.055 0.945 5 C -0.150 4.150 6 C -0.159 4.159 7 C -0.153 4.153 8 C -0.076 4.076 9 N -0.256 5.256 10 C -0.062 4.062 11 C -0.173 4.173 12 C 0.290 3.710 13 O -0.425 6.425 14 N -0.336 5.336 15 C -0.060 4.060 16 C 0.125 3.875 17 C -0.563 4.563 18 H 0.076 0.924 19 C -0.142 4.142 20 N -0.535 5.535 21 Si 0.726 3.274 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.209 1.209 25 H 0.085 0.915 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.049 0.951 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.058 0.942 40 H 0.100 0.900 41 H 0.111 0.889 42 H 0.061 0.939 43 H 0.091 0.909 44 H 0.077 0.923 45 H 0.049 0.951 46 H 0.061 0.939 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.122 9.958 19.928 22.278 hybrid contribution 0.220 -0.772 -0.406 0.900 sum 0.098 9.185 19.522 21.575 Atomic orbital electron populations 1.21681 0.94917 1.00592 1.02784 1.21679 0.97445 0.95039 1.01987 1.21585 0.96163 0.93606 0.90783 0.94478 1.21673 1.02116 0.95067 0.96125 1.21585 1.00199 0.96073 0.98070 1.21572 1.01644 0.98040 0.94061 1.22132 0.97381 0.89567 0.98532 1.61903 1.59262 1.01774 1.02691 1.21914 0.97605 0.99324 0.87370 1.21615 1.02102 1.00393 0.93159 1.20348 0.81872 0.83775 0.84987 1.90657 1.34276 1.32263 1.85265 1.48156 1.37663 1.36186 1.11581 1.21628 0.92341 0.89989 1.02049 1.19275 0.98114 0.91258 0.78853 1.21485 1.20193 1.09772 1.04859 0.92407 1.24947 0.95768 0.97899 0.95591 1.69945 1.35720 1.38555 1.09261 0.86444 0.80464 0.82696 0.77838 1.19777 1.20973 1.20886 0.91512 0.93659 0.92858 0.91324 0.91933 0.90681 0.91909 0.92064 0.92519 0.91096 0.91867 0.95148 0.90535 0.89190 0.94210 0.90004 0.88858 0.93908 0.90891 0.92295 0.95113 0.93916 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.38 37.15 0.35 -1.21 16 2 C -0.12 -1.35 5.12 -26.73 -0.14 -1.49 16 3 C 0.09 0.94 2.13 -67.72 -0.14 0.79 16 4 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 5 C -0.11 -1.00 5.13 -26.65 -0.14 -1.13 16 6 C -0.12 -1.00 6.00 -26.61 -0.16 -1.15 16 7 C -0.12 -0.99 6.09 -26.65 -0.16 -1.15 16 8 C 0.05 0.54 5.30 -3.83 -0.02 0.52 16 9 N -0.53 -6.24 3.69 -226.69 -0.84 -7.08 16 10 C 0.07 0.95 3.63 -3.83 -0.01 0.94 16 11 C -0.13 -1.99 4.28 -27.89 -0.12 -2.11 16 12 C 0.50 10.59 7.67 -10.98 -0.08 10.51 16 13 O -0.55 -13.89 15.56 5.56 0.09 -13.80 16 14 N -0.60 -13.04 2.86 -182.96 -0.52 -13.56 16 15 C 0.08 1.35 10.24 59.85 0.61 1.97 16 16 C 0.24 6.52 5.16 -5.20 -0.03 6.50 16 17 C -0.52 -15.12 9.39 -34.44 -0.32 -15.44 16 18 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 20 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 21 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 22 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 25 H 0.07 0.83 7.15 -51.93 -0.37 0.46 16 26 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.52 6.30 -51.93 -0.33 0.20 16 28 H 0.07 0.86 6.25 -51.93 -0.32 0.54 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.69 6.40 -51.93 -0.33 0.36 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.79 6.44 -51.93 -0.33 0.45 16 38 H 0.09 1.44 5.27 -51.93 -0.27 1.16 16 39 H 0.04 0.63 8.02 -51.93 -0.42 0.22 16 40 H 0.08 1.07 6.57 -51.93 -0.34 0.73 16 41 H 0.09 1.31 7.40 -51.93 -0.38 0.93 16 42 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 44 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 45 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 46 H 0.04 1.28 7.42 -51.92 -0.39 0.90 16 47 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 358.61 15.07 5.40 5.40 Total: -1.00 -32.50 358.61 -9.05 -41.55 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -8.44 Total: -2.54 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: -0.46 Total: -0.84 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: -0.62 Total: -46.87 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: 0.09 Total: -13.80 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.50 -9.05 -41.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034674503.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.129 kcal (2) G-P(sol) polarization free energy of solvation -32.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds