Wall clock time and date at job start Tue Mar 31 2020 05:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.47460 * 2 1 4 4 H 1.08995 * 109.46626 * 184.02293 * 3 2 1 5 5 C 1.53031 * 109.46043 * 64.04985 * 3 2 1 6 6 C 1.53117 * 109.27741 * 180.80532 * 5 3 2 7 7 C 1.53121 * 109.15900 * 57.66017 * 6 5 3 8 8 C 1.53036 * 109.27817 * 302.34343 * 7 6 5 9 9 N 1.46848 * 109.52399 * 59.17758 * 8 7 6 10 10 C 1.46901 * 111.00246 * 174.15924 * 9 8 7 11 11 C 1.52993 * 109.47228 * 289.33870 * 10 9 8 12 12 C 1.50703 * 109.47150 * 179.97438 * 11 10 9 13 13 O 1.21278 * 119.99924 * 359.73311 * 12 11 10 14 14 N 1.34780 * 120.00006 * 179.97438 * 12 11 10 15 15 C 1.46500 * 119.99882 * 0.02562 * 14 12 11 16 16 C 1.46491 * 119.99978 * 180.02562 * 14 12 11 17 17 C 1.50701 * 109.47477 * 89.99910 * 16 14 12 18 18 H 1.07999 * 119.99396 * 0.02562 * 17 16 14 19 19 C 1.37874 * 120.00012 * 180.02562 * 17 16 14 20 20 N 1.31514 * 120.00293 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99906 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46816 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47036 * 119.99982 * 21 19 17 24 24 H 1.48500 * 109.46952 * 239.99965 * 21 19 17 25 25 H 1.09005 * 109.47350 * 64.81475 * 1 2 3 26 26 H 1.09001 * 109.47600 * 184.81606 * 1 2 3 27 27 H 1.08999 * 109.47216 * 304.81638 * 1 2 3 28 28 H 1.09000 * 109.47213 * 239.99932 * 2 1 3 29 29 H 1.09004 * 109.47412 * 119.99615 * 2 1 3 30 30 H 1.08999 * 109.50958 * 300.75213 * 5 3 2 31 31 H 1.09005 * 109.49990 * 60.83015 * 5 3 2 32 32 H 1.09000 * 109.52333 * 177.56055 * 6 5 3 33 33 H 1.09000 * 109.52961 * 297.69094 * 6 5 3 34 34 H 1.09001 * 109.50532 * 62.28584 * 7 6 5 35 35 H 1.09000 * 109.50324 * 182.36544 * 7 6 5 36 36 H 1.09004 * 109.46223 * 299.16405 * 8 7 6 37 37 H 1.09000 * 109.46374 * 179.19491 * 8 7 6 38 38 H 1.08998 * 109.46770 * 169.34042 * 10 9 8 39 39 H 1.09000 * 109.46748 * 49.33930 * 10 9 8 40 40 H 1.09005 * 109.47277 * 59.99746 * 11 10 9 41 41 H 1.08997 * 109.47890 * 300.00172 * 11 10 9 42 42 H 1.08994 * 109.47228 * 89.99449 * 15 14 12 43 43 H 1.09003 * 109.47021 * 209.99777 * 15 14 12 44 44 H 1.09004 * 109.47010 * 329.99654 * 15 14 12 45 45 H 1.08996 * 109.47404 * 210.00434 * 16 14 12 46 46 H 1.09008 * 109.46868 * 329.99932 * 16 14 12 47 47 H 0.96999 * 120.00263 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1276 1.4432 -0.0721 5 6 1.6147 2.1337 1.2974 6 6 2.1099 3.5825 1.2842 7 6 1.5441 4.2957 0.0530 8 6 1.9714 3.5419 -1.2084 9 7 1.4731 2.1618 -1.1479 10 6 1.7451 1.4483 -2.4029 11 6 0.8474 2.0039 -3.5102 12 6 1.1268 1.2724 -4.7978 13 8 1.9652 0.3965 -4.8280 14 7 0.4485 1.5948 -5.9170 15 6 -0.5601 2.6568 -5.8818 16 6 0.7197 0.8833 -7.1684 17 6 -0.1842 -0.3184 -7.2693 18 1 -0.8903 -0.5305 -6.4802 19 6 -0.1095 -1.1468 -8.3689 20 7 0.7508 -0.8886 -9.3295 21 14 -1.2304 -2.6359 -8.4942 22 1 -2.0995 -2.7038 -7.2920 23 1 -2.0748 -2.5189 -9.7101 24 1 -0.4075 -3.8691 -8.5798 25 1 -0.3634 0.4373 -0.9300 26 1 -0.3634 -1.0240 0.0863 27 1 -0.3633 0.5867 0.8437 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.5277 2.1213 1.3770 31 1 2.0479 1.6082 2.1485 32 1 1.7721 4.0912 2.1870 33 1 3.1991 3.5949 1.2450 34 1 0.4560 4.3174 0.1129 35 1 1.9269 5.3156 0.0153 36 1 3.0594 3.5325 -1.2750 37 1 1.5583 4.0390 -2.0861 38 1 1.5410 0.3861 -2.2684 39 1 2.7904 1.5854 -2.6795 40 1 1.0513 3.0662 -3.6447 41 1 -0.1980 1.8670 -3.2337 42 1 -0.0892 3.6127 -6.1105 43 1 -1.3343 2.4472 -6.6200 44 1 -1.0073 2.7004 -4.8887 45 1 0.5352 1.5485 -8.0119 46 1 1.7599 0.5578 -7.1832 47 1 0.8035 -1.4717 -10.1029 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034674503.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:14 Heat of formation + Delta-G solvation = -68.851371 kcal Electronic energy + Delta-G solvation = -23288.659762 eV Core-core repulsion = 20083.840027 eV Total energy + Delta-G solvation = -3204.819735 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.97021 -40.12425 -36.62678 -35.20021 -34.84854 -34.63802 -31.49356 -29.96007 -29.53250 -27.32890 -26.20292 -25.19293 -24.61697 -22.72706 -21.75930 -20.14508 -19.84497 -18.70902 -17.93894 -17.13912 -16.96217 -16.41855 -16.35233 -15.95542 -15.55816 -15.30703 -15.16164 -14.56685 -14.38978 -13.98604 -13.80674 -13.67594 -13.53543 -13.42346 -13.31854 -13.15356 -12.95328 -12.80416 -12.71704 -12.43826 -12.26971 -12.21659 -12.04748 -12.00648 -11.69498 -11.67925 -11.34212 -11.11085 -10.89892 -10.66024 -10.59272 -9.41536 -9.25808 -8.23395 -6.38525 1.35621 1.38128 1.50226 1.84729 2.28741 2.42047 2.96916 3.05997 3.78427 3.82766 3.89715 3.98816 4.08589 4.17922 4.22979 4.39563 4.41409 4.43531 4.54318 4.56885 4.62465 4.72261 4.79595 4.81679 4.86232 4.88939 4.96396 5.01300 5.03952 5.06893 5.11826 5.14971 5.19103 5.22398 5.27808 5.32320 5.40460 5.53745 5.56018 5.60410 5.84205 6.05461 6.12236 6.24178 6.69208 6.79695 7.27510 7.49025 8.83885 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025103 B = 0.003707 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.127481 B = 7551.651704 C = 8152.723341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.124 4.124 3 C 0.084 3.916 4 H 0.026 0.974 5 C -0.107 4.107 6 C -0.121 4.121 7 C -0.110 4.110 8 C 0.046 3.954 9 N -0.524 5.524 10 C 0.074 3.926 11 C -0.112 4.112 12 C 0.494 3.506 13 O -0.602 6.602 14 N -0.611 5.611 15 C 0.079 3.921 16 C 0.258 3.742 17 C -0.542 4.542 18 H 0.053 0.947 19 C 0.006 3.994 20 N -0.929 5.929 21 Si 0.969 3.031 22 H -0.266 1.266 23 H -0.268 1.268 24 H -0.282 1.282 25 H 0.049 0.951 26 H 0.045 0.955 27 H 0.068 0.932 28 H 0.043 0.957 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.022 0.978 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.017 0.983 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.095 0.905 45 H 0.023 0.977 46 H -0.005 1.005 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.973 11.699 22.147 25.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.161 4.161 3 C -0.024 4.024 4 H 0.044 0.956 5 C -0.144 4.144 6 C -0.159 4.159 7 C -0.148 4.148 8 C -0.081 4.081 9 N -0.249 5.249 10 C -0.054 4.054 11 C -0.152 4.152 12 C 0.283 3.717 13 O -0.484 6.484 14 N -0.343 5.343 15 C -0.063 4.063 16 C 0.137 3.863 17 C -0.581 4.581 18 H 0.071 0.929 19 C -0.193 4.193 20 N -0.569 5.569 21 Si 0.793 3.207 22 H -0.191 1.191 23 H -0.193 1.193 24 H -0.208 1.208 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.087 0.913 28 H 0.062 0.938 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.040 0.960 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.035 0.965 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.113 0.887 45 H 0.041 0.959 46 H 0.014 0.986 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.004 11.243 22.012 24.798 hybrid contribution 0.855 -1.121 -1.045 1.755 sum -1.149 10.121 20.967 23.311 Atomic orbital electron populations 1.21631 0.94587 1.00772 1.02470 1.21671 0.97674 0.95255 1.01524 1.21675 0.95525 0.93710 0.91507 0.95600 1.21648 1.02225 0.95544 0.94999 1.21600 1.00061 0.95564 0.98652 1.21555 1.01784 0.98485 0.92953 1.22269 0.96967 0.88807 1.00096 1.61955 1.59173 1.02286 1.01477 1.21701 0.96173 0.98757 0.88778 1.21516 1.03144 1.00945 0.89550 1.21412 0.80626 0.83263 0.86421 1.90626 1.36659 1.34891 1.86244 1.48203 1.38979 1.36984 1.10090 1.21935 0.91128 0.89174 1.04092 1.18745 0.95092 0.91278 0.81223 1.21742 1.20487 1.10889 1.04962 0.92852 1.25892 0.97275 1.01021 0.95119 1.70061 1.37129 1.39877 1.09861 0.85343 0.78471 0.78342 0.78503 1.19059 1.19267 1.20757 0.93195 0.93622 0.91307 0.93837 0.90372 0.90516 0.90679 0.90365 0.92789 0.90867 0.90363 0.96013 0.90031 0.91123 0.96466 0.87010 0.86823 0.91126 0.91631 0.88702 0.95898 0.98637 0.92389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.38 71.98 0.68 -2.16 16 2 C -0.12 -2.65 5.12 30.59 0.16 -2.49 16 3 C 0.08 1.73 2.13 44.94 0.10 1.82 16 4 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 5 C -0.11 -1.62 5.13 30.64 0.16 -1.47 16 6 C -0.12 -1.63 6.00 30.67 0.18 -1.45 16 7 C -0.11 -1.56 6.09 30.65 0.19 -1.37 16 8 C 0.05 0.87 5.30 86.33 0.46 1.33 16 9 N -0.52 -11.66 3.69 -871.12 -3.22 -14.88 16 10 C 0.07 2.17 3.63 86.30 0.31 2.49 16 11 C -0.11 -3.22 4.28 29.85 0.13 -3.09 16 12 C 0.49 21.09 7.67 87.66 0.67 21.76 16 13 O -0.60 -32.23 15.56 -3.02 -0.05 -32.27 16 14 N -0.61 -26.61 2.86 -851.14 -2.43 -29.05 16 15 C 0.08 2.37 10.24 127.77 1.31 3.68 16 16 C 0.26 14.34 5.16 85.64 0.44 14.79 16 17 C -0.54 -32.01 9.39 25.60 0.24 -31.77 16 18 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 19 C 0.01 0.33 5.46 84.65 0.46 0.80 16 20 N -0.93 -57.23 13.29 21.45 0.28 -56.94 16 21 Si 0.97 45.65 29.54 68.60 2.03 47.67 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 24 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 25 H 0.05 1.19 7.15 -2.38 -0.02 1.18 16 26 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.07 1.19 6.30 -2.39 -0.02 1.18 16 28 H 0.04 1.15 6.25 -2.39 -0.01 1.13 16 29 H 0.08 1.40 8.14 -2.38 -0.02 1.39 16 30 H 0.08 1.17 6.40 -2.39 -0.02 1.16 16 31 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.02 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.08 1.45 6.44 -2.39 -0.02 1.43 16 38 H 0.07 2.35 5.27 -2.39 -0.01 2.34 16 39 H 0.02 0.57 8.02 -2.39 -0.02 0.55 16 40 H 0.11 2.59 6.57 -2.38 -0.02 2.58 16 41 H 0.11 2.89 7.40 -2.39 -0.02 2.87 16 42 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.06 2.08 8.07 -2.39 -0.02 2.06 16 44 H 0.09 2.18 6.44 -2.39 -0.02 2.16 16 45 H 0.02 1.29 8.07 -2.39 -0.02 1.27 16 46 H 0.00 -0.29 7.42 -2.38 -0.02 -0.31 16 47 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -73.93 358.61 3.02 -70.91 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: 0.92 Total: 11.69 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 5.48 Total: 2.87 kcal Atomic # 7 Polarization: -95.50 SS G_CDS: -5.36 Total: -100.87 kcal Atomic # 8 Polarization: -32.23 SS G_CDS: -0.05 Total: -32.27 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Total: -73.93 3.02 -70.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034674503.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.061 kcal (2) G-P(sol) polarization free energy of solvation -73.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds