Wall clock time and date at job start Tue Mar 31 2020 05:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.47002 * 2 1 4 4 H 1.08996 * 109.46303 * 304.25847 * 3 2 1 5 5 C 1.53035 * 109.46042 * 64.24228 * 3 2 1 6 6 C 1.53124 * 109.27497 * 179.19304 * 5 3 2 7 7 C 1.53112 * 109.16090 * 302.34464 * 6 5 3 8 8 C 1.53046 * 109.27934 * 57.65801 * 7 6 5 9 9 N 1.46841 * 109.45948 * 184.29646 * 3 2 1 10 10 C 1.46905 * 111.00600 * 54.14354 * 9 3 2 11 11 C 1.52998 * 109.47169 * 175.81779 * 10 9 3 12 12 C 1.50704 * 109.46818 * 180.02562 * 11 10 9 13 13 O 1.21278 * 119.99886 * 359.97438 * 12 11 10 14 14 N 1.34774 * 119.99866 * 180.02562 * 12 11 10 15 15 C 1.46500 * 120.00311 * 359.97438 * 14 12 11 16 16 C 1.46496 * 119.99973 * 180.02562 * 14 12 11 17 17 C 1.50706 * 109.47113 * 89.99490 * 16 14 12 18 18 H 1.07999 * 119.99939 * 0.02562 * 17 16 14 19 19 C 1.37874 * 119.99896 * 179.97438 * 17 16 14 20 20 N 1.31519 * 120.00391 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00050 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47282 * 89.99917 * 21 19 17 23 23 H 1.48504 * 109.47347 * 210.00383 * 21 19 17 24 24 H 1.48503 * 109.47107 * 330.00236 * 21 19 17 25 25 H 1.08997 * 109.46548 * 294.82033 * 1 2 3 26 26 H 1.09001 * 109.46950 * 174.82137 * 1 2 3 27 27 H 1.09000 * 109.47099 * 54.82123 * 1 2 3 28 28 H 1.08991 * 109.47199 * 120.00171 * 2 1 3 29 29 H 1.09005 * 109.46960 * 240.00254 * 2 1 3 30 30 H 1.08993 * 109.50307 * 299.13286 * 5 3 2 31 31 H 1.08997 * 109.50309 * 59.25350 * 5 3 2 32 32 H 1.09000 * 109.52026 * 62.25114 * 6 5 3 33 33 H 1.09001 * 109.52032 * 182.37702 * 6 5 3 34 34 H 1.09005 * 109.50520 * 177.59589 * 7 6 5 35 35 H 1.09001 * 109.50707 * 297.71423 * 7 6 5 36 36 H 1.08991 * 109.46073 * 60.83448 * 8 7 6 37 37 H 1.09002 * 109.45989 * 180.81639 * 8 7 6 38 38 H 1.08998 * 109.46775 * 295.82663 * 10 9 3 39 39 H 1.09003 * 109.46344 * 55.82217 * 10 9 3 40 40 H 1.08997 * 109.47553 * 300.00441 * 11 10 9 41 41 H 1.09004 * 109.46669 * 60.00655 * 11 10 9 42 42 H 1.08997 * 109.47560 * 89.99698 * 15 14 12 43 43 H 1.08997 * 109.47690 * 210.00586 * 15 14 12 44 44 H 1.09013 * 109.46765 * 330.00045 * 15 14 12 45 45 H 1.09005 * 109.47529 * 209.99743 * 16 14 12 46 46 H 1.09003 * 109.47396 * 329.99867 * 16 14 12 47 47 H 0.96997 * 120.00348 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6157 1.9778 -0.8494 5 6 1.6188 2.1322 1.2996 6 6 2.1484 3.5690 1.3040 7 6 3.6712 3.5437 1.1462 8 6 4.0330 2.8130 -0.1490 9 7 3.5048 1.4436 -0.1037 10 6 3.9507 0.6686 -1.2694 11 6 5.4708 0.7788 -1.4039 12 6 5.9281 -0.0157 -2.6001 13 8 5.1180 -0.6117 -3.2778 14 7 7.2373 -0.0646 -2.9160 15 6 8.2160 0.6549 -2.0969 16 6 7.6818 -0.8365 -4.0791 17 6 7.6788 0.0476 -5.2996 18 1 7.3765 1.0811 -5.2170 19 6 8.0631 -0.4628 -6.5214 20 7 8.4318 -1.7213 -6.6219 21 14 8.0601 0.6331 -8.0341 22 1 9.3844 1.2907 -8.1717 23 1 7.7879 -0.1890 -9.2405 24 1 7.0054 1.6690 -7.8929 25 1 -0.3632 0.4314 0.9327 26 1 -0.3633 -1.0235 -0.0928 27 1 -0.3633 0.5921 -0.8400 28 1 1.8934 -0.5138 0.8899 29 1 1.8934 -0.5138 -0.8901 30 1 0.5311 2.1451 1.3687 31 1 2.0317 1.5896 2.1499 32 1 1.7056 4.1229 0.4763 33 1 1.8868 4.0507 2.2461 34 1 4.0499 4.5650 1.1058 35 1 4.1164 3.0232 1.9942 36 1 3.5991 3.3418 -0.9975 37 1 5.1171 2.7806 -0.2570 38 1 3.6723 -0.3770 -1.1385 39 1 3.4769 1.0610 -2.1692 40 1 5.7491 1.8245 -1.5347 41 1 5.9445 0.3865 -0.5040 42 1 8.5712 0.0032 -1.2988 43 1 9.0575 0.9589 -2.7194 44 1 7.7472 1.5383 -1.6631 45 1 8.6907 -1.2099 -3.9034 46 1 7.0058 -1.6768 -4.2375 47 1 8.7024 -2.0802 -7.4814 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034674504.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:18 Heat of formation + Delta-G solvation = -50.049782 kcal Electronic energy + Delta-G solvation = -23073.518030 eV Core-core repulsion = 19869.513593 eV Total energy + Delta-G solvation = -3204.004436 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.79008 -38.69522 -34.87179 -34.23622 -34.11031 -32.59189 -30.13922 -29.35147 -27.68280 -25.83351 -24.88056 -24.38741 -22.93887 -21.27225 -20.87108 -19.71161 -18.28354 -16.74282 -16.50849 -15.58968 -15.30972 -15.25982 -15.06252 -14.80547 -14.30422 -14.20643 -13.98750 -13.51723 -13.17070 -13.07967 -12.82810 -12.27979 -12.19248 -12.08132 -11.86724 -11.82481 -11.64903 -11.54873 -11.33187 -11.14235 -11.13998 -10.87837 -10.86579 -10.66257 -10.55313 -10.24769 -10.15126 -10.08890 -9.61246 -8.84933 -8.42727 -8.28278 -7.61004 -6.03292 -4.08092 3.30083 3.36550 3.40169 3.49242 3.68321 4.14937 4.45847 4.60888 4.64385 4.75095 4.94605 5.05947 5.14036 5.22226 5.23449 5.28485 5.30732 5.37101 5.38855 5.49225 5.55166 5.57528 5.64760 5.74395 5.77108 5.82949 5.84400 5.90236 5.94933 5.95881 6.02111 6.11225 6.12748 6.19545 6.23735 6.26473 6.30878 7.06445 7.10862 7.15264 7.46679 7.56958 7.93295 8.25002 8.45547 8.91667 9.13223 9.57002 11.04761 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022684 B = 0.003517 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.043048 B = 7959.090542 C = 8273.079218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.087 3.913 4 H 0.039 0.961 5 C -0.111 4.111 6 C -0.122 4.122 7 C -0.116 4.116 8 C 0.047 3.953 9 N -0.535 5.535 10 C 0.071 3.929 11 C -0.140 4.140 12 C 0.504 3.496 13 O -0.545 6.545 14 N -0.604 5.604 15 C 0.085 3.915 16 C 0.245 3.755 17 C -0.526 4.526 18 H 0.056 0.944 19 C 0.060 3.940 20 N -0.895 5.895 21 Si 0.898 3.102 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.275 1.275 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.031 0.969 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.040 0.960 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.044 0.956 43 H 0.072 0.928 44 H 0.056 0.944 45 H 0.031 0.969 46 H 0.043 0.957 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.354 9.142 17.988 22.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.021 4.021 4 H 0.057 0.943 5 C -0.148 4.148 6 C -0.160 4.160 7 C -0.154 4.154 8 C -0.081 4.081 9 N -0.260 5.260 10 C -0.057 4.057 11 C -0.180 4.180 12 C 0.291 3.709 13 O -0.423 6.423 14 N -0.336 5.336 15 C -0.060 4.060 16 C 0.125 3.875 17 C -0.565 4.565 18 H 0.074 0.926 19 C -0.142 4.142 20 N -0.534 5.534 21 Si 0.726 3.274 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.199 1.199 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.050 0.950 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.059 0.941 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.063 0.937 43 H 0.091 0.909 44 H 0.075 0.925 45 H 0.049 0.951 46 H 0.061 0.939 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.508 8.453 17.898 22.410 hybrid contribution -0.079 1.053 -1.674 1.979 sum -10.586 9.505 16.224 21.579 Atomic orbital electron populations 1.21789 0.95759 1.01702 1.01566 1.21680 0.95466 0.95903 1.03172 1.21637 0.87222 0.96195 0.97044 0.94334 1.21659 1.00040 0.95420 0.97726 1.21594 0.96071 0.96910 1.01431 1.21583 0.95891 0.99672 0.98208 1.22205 1.00575 0.88544 0.96774 1.62004 1.09424 1.13076 1.41531 1.21864 0.93746 0.99369 0.90722 1.21771 0.96905 1.01129 0.98231 1.20301 0.82782 0.82120 0.85741 1.90660 1.52528 1.46009 1.53100 1.48155 1.05645 1.49962 1.29826 1.21624 0.93696 0.95607 0.95040 1.19278 0.95399 0.91680 0.81106 1.21440 1.44740 0.97260 0.93023 0.92553 1.24941 0.95208 0.95129 0.98876 1.69934 1.44984 1.13154 1.25333 0.86500 0.78224 0.80408 0.82303 1.20632 1.21055 1.19949 0.92693 0.92603 0.92911 0.91171 0.91114 0.91588 0.91142 0.92467 0.92025 0.91788 0.91117 0.95045 0.90090 0.89485 0.94128 0.89543 0.88880 0.93725 0.90880 0.92526 0.95058 0.93851 0.92723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.52 37.16 0.35 -0.99 16 2 C -0.12 -1.33 5.13 -26.73 -0.14 -1.47 16 3 C 0.09 0.96 1.92 -67.72 -0.13 0.83 16 4 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 5 C -0.11 -1.00 5.09 -26.65 -0.14 -1.13 16 6 C -0.12 -1.04 6.00 -26.61 -0.16 -1.20 16 7 C -0.12 -1.03 6.09 -26.65 -0.16 -1.20 16 8 C 0.05 0.51 5.03 -3.83 -0.02 0.49 16 9 N -0.54 -6.52 4.60 -226.69 -1.04 -7.56 16 10 C 0.07 1.04 3.74 -3.82 -0.01 1.03 16 11 C -0.14 -2.12 3.74 -27.88 -0.10 -2.22 16 12 C 0.50 10.63 7.67 -10.98 -0.08 10.54 16 13 O -0.54 -13.88 15.56 5.56 0.09 -13.79 16 14 N -0.60 -13.03 2.86 -182.95 -0.52 -13.56 16 15 C 0.08 1.35 10.24 59.85 0.61 1.96 16 16 C 0.24 6.53 5.16 -5.19 -0.03 6.50 16 17 C -0.53 -15.16 9.39 -34.44 -0.32 -15.48 16 18 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 21 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 25 H 0.05 0.43 6.82 -51.93 -0.35 0.07 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.88 6.17 -51.93 -0.32 0.56 16 30 H 0.07 0.53 6.70 -51.93 -0.35 0.18 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.86 5.84 -51.93 -0.30 0.55 16 38 H 0.09 1.37 6.33 -51.93 -0.33 1.04 16 39 H 0.04 0.68 8.09 -51.93 -0.42 0.26 16 40 H 0.09 1.18 5.45 -51.93 -0.28 0.89 16 41 H 0.09 1.25 8.11 -51.93 -0.42 0.83 16 42 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 1.20 8.07 -51.93 -0.42 0.79 16 44 H 0.06 0.74 6.44 -51.92 -0.33 0.40 16 45 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 46 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 47 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 360.54 15.07 5.43 5.43 Total: -1.00 -32.66 360.54 -9.29 -41.95 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -8.53 Total: -2.68 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -0.43 Total: -0.68 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: -0.83 Total: -47.30 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: 0.09 Total: -13.79 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.66 -9.29 -41.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034674504.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.100 kcal (2) G-P(sol) polarization free energy of solvation -32.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds