Wall clock time and date at job start Tue Mar 31 2020 05:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.47002 * 2 1 4 4 H 1.08996 * 109.46303 * 304.25847 * 3 2 1 5 5 C 1.53035 * 109.46042 * 64.24228 * 3 2 1 6 6 C 1.53124 * 109.27497 * 179.19304 * 5 3 2 7 7 C 1.53112 * 109.16090 * 302.34464 * 6 5 3 8 8 C 1.53046 * 109.27934 * 57.65801 * 7 6 5 9 9 N 1.46841 * 109.45948 * 184.29646 * 3 2 1 10 10 C 1.46905 * 111.00600 * 54.14354 * 9 3 2 11 11 C 1.52998 * 109.47169 * 175.81779 * 10 9 3 12 12 C 1.50704 * 109.46818 * 180.02562 * 11 10 9 13 13 O 1.21278 * 119.99886 * 359.97438 * 12 11 10 14 14 N 1.34774 * 119.99866 * 180.02562 * 12 11 10 15 15 C 1.46500 * 120.00311 * 359.97438 * 14 12 11 16 16 C 1.46496 * 119.99973 * 180.02562 * 14 12 11 17 17 C 1.50706 * 109.47113 * 89.99490 * 16 14 12 18 18 H 1.07999 * 119.99939 * 0.02562 * 17 16 14 19 19 C 1.37874 * 119.99896 * 179.97438 * 17 16 14 20 20 N 1.31519 * 120.00391 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00050 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47282 * 89.99917 * 21 19 17 23 23 H 1.48504 * 109.47347 * 210.00383 * 21 19 17 24 24 H 1.48503 * 109.47107 * 330.00236 * 21 19 17 25 25 H 1.08997 * 109.46548 * 294.82033 * 1 2 3 26 26 H 1.09001 * 109.46950 * 174.82137 * 1 2 3 27 27 H 1.09000 * 109.47099 * 54.82123 * 1 2 3 28 28 H 1.08991 * 109.47199 * 120.00171 * 2 1 3 29 29 H 1.09005 * 109.46960 * 240.00254 * 2 1 3 30 30 H 1.08993 * 109.50307 * 299.13286 * 5 3 2 31 31 H 1.08997 * 109.50309 * 59.25350 * 5 3 2 32 32 H 1.09000 * 109.52026 * 62.25114 * 6 5 3 33 33 H 1.09001 * 109.52032 * 182.37702 * 6 5 3 34 34 H 1.09005 * 109.50520 * 177.59589 * 7 6 5 35 35 H 1.09001 * 109.50707 * 297.71423 * 7 6 5 36 36 H 1.08991 * 109.46073 * 60.83448 * 8 7 6 37 37 H 1.09002 * 109.45989 * 180.81639 * 8 7 6 38 38 H 1.08998 * 109.46775 * 295.82663 * 10 9 3 39 39 H 1.09003 * 109.46344 * 55.82217 * 10 9 3 40 40 H 1.08997 * 109.47553 * 300.00441 * 11 10 9 41 41 H 1.09004 * 109.46669 * 60.00655 * 11 10 9 42 42 H 1.08997 * 109.47560 * 89.99698 * 15 14 12 43 43 H 1.08997 * 109.47690 * 210.00586 * 15 14 12 44 44 H 1.09013 * 109.46765 * 330.00045 * 15 14 12 45 45 H 1.09005 * 109.47529 * 209.99743 * 16 14 12 46 46 H 1.09003 * 109.47396 * 329.99867 * 16 14 12 47 47 H 0.96997 * 120.00348 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6157 1.9778 -0.8494 5 6 1.6188 2.1322 1.2996 6 6 2.1484 3.5690 1.3040 7 6 3.6712 3.5437 1.1462 8 6 4.0330 2.8130 -0.1490 9 7 3.5048 1.4436 -0.1037 10 6 3.9507 0.6686 -1.2694 11 6 5.4708 0.7788 -1.4039 12 6 5.9281 -0.0157 -2.6001 13 8 5.1180 -0.6117 -3.2778 14 7 7.2373 -0.0646 -2.9160 15 6 8.2160 0.6549 -2.0969 16 6 7.6818 -0.8365 -4.0791 17 6 7.6788 0.0476 -5.2996 18 1 7.3765 1.0811 -5.2170 19 6 8.0631 -0.4628 -6.5214 20 7 8.4318 -1.7213 -6.6219 21 14 8.0601 0.6331 -8.0341 22 1 9.3844 1.2907 -8.1717 23 1 7.7879 -0.1890 -9.2405 24 1 7.0054 1.6690 -7.8929 25 1 -0.3632 0.4314 0.9327 26 1 -0.3633 -1.0235 -0.0928 27 1 -0.3633 0.5921 -0.8400 28 1 1.8934 -0.5138 0.8899 29 1 1.8934 -0.5138 -0.8901 30 1 0.5311 2.1451 1.3687 31 1 2.0317 1.5896 2.1499 32 1 1.7056 4.1229 0.4763 33 1 1.8868 4.0507 2.2461 34 1 4.0499 4.5650 1.1058 35 1 4.1164 3.0232 1.9942 36 1 3.5991 3.3418 -0.9975 37 1 5.1171 2.7806 -0.2570 38 1 3.6723 -0.3770 -1.1385 39 1 3.4769 1.0610 -2.1692 40 1 5.7491 1.8245 -1.5347 41 1 5.9445 0.3865 -0.5040 42 1 8.5712 0.0032 -1.2988 43 1 9.0575 0.9589 -2.7194 44 1 7.7472 1.5383 -1.6631 45 1 8.6907 -1.2099 -3.9034 46 1 7.0058 -1.6768 -4.2375 47 1 8.7024 -2.0802 -7.4814 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034674504.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:17 Heat of formation + Delta-G solvation = -71.012213 kcal Electronic energy + Delta-G solvation = -23074.427029 eV Core-core repulsion = 19869.513593 eV Total energy + Delta-G solvation = -3204.913436 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.99194 -40.09087 -36.64356 -35.33472 -34.90759 -34.69712 -31.46594 -30.12134 -29.52770 -27.33417 -26.18186 -25.21617 -24.61099 -22.51351 -21.68857 -20.56872 -19.88657 -18.72197 -18.08173 -17.16780 -16.79643 -16.50248 -16.20739 -16.01722 -15.64509 -15.30740 -15.02460 -14.51010 -14.45249 -14.23739 -13.93161 -13.62103 -13.58506 -13.52882 -13.44133 -13.18844 -12.83749 -12.71456 -12.65329 -12.43717 -12.41215 -12.30351 -12.22088 -11.95340 -11.73046 -11.63200 -11.51728 -11.08171 -10.93103 -10.66001 -10.60372 -9.43091 -9.30034 -8.24216 -6.39571 1.34495 1.37780 1.47980 1.82682 2.27121 2.40938 2.92980 3.05001 3.74382 3.78592 3.86824 3.96306 4.04189 4.15771 4.21302 4.35004 4.37784 4.43151 4.46433 4.55140 4.57776 4.70551 4.72499 4.80404 4.83062 4.92991 4.94177 4.96963 5.00134 5.02199 5.10058 5.11305 5.18769 5.20872 5.23547 5.30430 5.36196 5.39824 5.54134 5.54545 5.83042 6.04281 6.07749 6.20984 6.67709 6.78085 7.26261 7.47263 8.82891 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022684 B = 0.003517 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.043048 B = 7959.090542 C = 8273.079218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.123 4.123 3 C 0.084 3.916 4 H 0.025 0.975 5 C -0.105 4.105 6 C -0.123 4.123 7 C -0.111 4.111 8 C 0.040 3.960 9 N -0.530 5.530 10 C 0.080 3.920 11 C -0.120 4.120 12 C 0.494 3.506 13 O -0.601 6.601 14 N -0.611 5.611 15 C 0.078 3.922 16 C 0.258 3.742 17 C -0.544 4.544 18 H 0.052 0.948 19 C 0.006 3.994 20 N -0.929 5.929 21 Si 0.969 3.031 22 H -0.261 1.261 23 H -0.280 1.280 24 H -0.274 1.274 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.048 0.952 28 H 0.072 0.928 29 H 0.044 0.956 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.021 0.979 37 H 0.088 0.912 38 H 0.071 0.929 39 H 0.012 0.988 40 H 0.111 0.889 41 H 0.122 0.878 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.094 0.906 45 H 0.024 0.976 46 H -0.004 1.004 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.284 11.580 19.802 25.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.161 4.161 3 C -0.024 4.024 4 H 0.043 0.957 5 C -0.143 4.143 6 C -0.160 4.160 7 C -0.149 4.149 8 C -0.087 4.087 9 N -0.255 5.255 10 C -0.049 4.049 11 C -0.159 4.159 12 C 0.283 3.717 13 O -0.483 6.483 14 N -0.342 5.342 15 C -0.064 4.064 16 C 0.137 3.863 17 C -0.583 4.583 18 H 0.071 0.929 19 C -0.193 4.193 20 N -0.568 5.568 21 Si 0.793 3.207 22 H -0.186 1.186 23 H -0.205 1.205 24 H -0.199 1.199 25 H 0.091 0.909 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.091 0.909 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.039 0.961 37 H 0.106 0.894 38 H 0.089 0.911 39 H 0.030 0.970 40 H 0.129 0.871 41 H 0.140 0.860 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.113 0.887 45 H 0.042 0.958 46 H 0.014 0.986 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.411 10.923 19.761 24.864 hybrid contribution -0.109 0.256 -2.203 2.221 sum -10.520 11.180 17.558 23.322 Atomic orbital electron populations 1.21761 0.94257 1.02043 1.02333 1.21653 0.96822 0.95666 1.01950 1.21738 0.86428 0.96331 0.97918 0.95726 1.21635 1.00916 0.95610 0.96099 1.21615 0.95732 0.96418 1.02248 1.21572 0.96263 1.00195 0.96836 1.22356 1.00881 0.87702 0.97783 1.62073 1.10272 1.13789 1.39352 1.21653 0.93508 0.98949 0.90751 1.21690 0.96945 1.01250 0.96035 1.21367 0.81986 0.81649 0.86737 1.90629 1.53962 1.48391 1.55354 1.48200 1.07147 1.49835 1.29044 1.21943 0.92569 0.97061 0.94780 1.18751 0.93666 0.90857 0.83061 1.21708 1.45010 0.97285 0.94288 0.92946 1.25887 0.94528 0.96610 1.02227 1.70054 1.45491 1.14894 1.26392 0.85395 0.78946 0.78358 0.77976 1.18593 1.20548 1.19896 0.90919 0.92332 0.93278 0.90940 0.93735 0.90273 0.90968 0.92845 0.90217 0.90244 0.90791 0.96110 0.89354 0.91066 0.96959 0.87102 0.86013 0.91020 0.91584 0.88741 0.95808 0.98580 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.52 71.98 0.69 -1.81 16 2 C -0.12 -2.64 5.13 30.60 0.16 -2.48 16 3 C 0.08 1.79 1.92 44.94 0.09 1.87 16 4 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 5 C -0.10 -1.65 5.09 30.65 0.16 -1.49 16 6 C -0.12 -1.72 6.00 30.67 0.18 -1.54 16 7 C -0.11 -1.64 6.09 30.65 0.19 -1.45 16 8 C 0.04 0.79 5.03 86.33 0.43 1.23 16 9 N -0.53 -12.30 4.60 -871.10 -4.01 -16.31 16 10 C 0.08 2.38 3.74 86.30 0.32 2.70 16 11 C -0.12 -3.45 3.74 29.85 0.11 -3.33 16 12 C 0.49 21.13 7.67 87.66 0.67 21.80 16 13 O -0.60 -32.30 15.56 -3.02 -0.05 -32.35 16 14 N -0.61 -26.55 2.86 -851.11 -2.43 -28.98 16 15 C 0.08 2.34 10.24 127.77 1.31 3.65 16 16 C 0.26 14.33 5.16 85.64 0.44 14.77 16 17 C -0.54 -32.12 9.39 25.60 0.24 -31.88 16 18 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 19 C 0.01 0.38 5.46 84.65 0.46 0.84 16 20 N -0.93 -57.12 13.29 21.45 0.28 -56.84 16 21 Si 0.97 45.56 29.54 68.60 2.03 47.59 16 22 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 23 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 24 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 25 H 0.07 0.98 6.82 -2.39 -0.02 0.97 16 26 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.04 1.17 6.17 -2.38 -0.01 1.16 16 30 H 0.08 1.05 6.70 -2.39 -0.02 1.03 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.09 1.58 5.84 -2.39 -0.01 1.57 16 38 H 0.07 2.34 6.33 -2.39 -0.02 2.33 16 39 H 0.01 0.43 8.09 -2.39 -0.02 0.41 16 40 H 0.11 2.70 5.45 -2.39 -0.01 2.68 16 41 H 0.12 2.89 8.11 -2.39 -0.02 2.87 16 42 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.07 2.08 8.07 -2.39 -0.02 2.06 16 44 H 0.09 2.10 6.44 -2.38 -0.02 2.09 16 45 H 0.02 1.33 8.07 -2.38 -0.02 1.31 16 46 H 0.00 -0.25 7.42 -2.39 -0.02 -0.27 16 47 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -74.51 360.54 2.19 -72.33 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 0.91 Total: 11.69 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 5.45 Total: 2.87 kcal Atomic # 7 Polarization: -95.98 SS G_CDS: -6.15 Total: -102.13 kcal Atomic # 8 Polarization: -32.30 SS G_CDS: -0.05 Total: -32.35 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -74.51 2.19 -72.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034674504.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.314 kcal (2) G-P(sol) polarization free energy of solvation -74.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds