Wall clock time and date at job start Tue Mar 31 2020 05:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47145 * 2 1 4 4 H 1.09005 * 109.54037 * 55.09369 * 3 2 1 5 5 C 1.53125 * 109.50492 * 295.00157 * 3 2 1 6 6 C 1.53114 * 109.16368 * 182.40503 * 5 3 2 7 7 C 1.53037 * 109.31211 * 57.63311 * 6 5 3 8 8 N 1.46854 * 109.52285 * 300.88400 * 7 6 5 9 9 C 1.46895 * 110.99648 * 185.80147 * 8 7 6 10 10 C 1.52996 * 109.47373 * 65.74825 * 9 8 7 11 11 C 1.50702 * 109.47388 * 180.02562 * 10 9 8 12 12 O 1.21275 * 120.00079 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99782 * 179.97438 * 11 10 9 14 14 C 1.46502 * 120.00699 * 0.02562 * 13 11 10 15 15 C 1.46510 * 119.99799 * 179.97438 * 13 11 10 16 16 C 1.50703 * 109.46662 * 90.00099 * 15 13 11 17 17 H 1.07993 * 120.00298 * 0.02562 * 16 15 13 18 18 C 1.37882 * 119.99790 * 179.97438 * 16 15 13 19 19 N 1.31518 * 119.99779 * 0.02562 * 18 16 15 20 20 Si 1.86792 * 119.99978 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47188 * 60.00282 * 20 18 16 22 22 H 1.48504 * 109.47119 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47322 * 300.00137 * 20 18 16 24 24 C 1.46840 * 111.23238 * 61.67711 * 8 7 6 25 25 H 1.08998 * 109.47080 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47529 * 299.99945 * 1 2 3 27 27 H 1.09003 * 109.47300 * 60.00446 * 1 2 3 28 28 H 1.09002 * 109.47056 * 239.99811 * 2 1 3 29 29 H 1.09003 * 109.46845 * 119.99829 * 2 1 3 30 30 H 1.08998 * 109.52257 * 62.49696 * 5 3 2 31 31 H 1.09004 * 109.56800 * 302.34406 * 5 3 2 32 32 H 1.09002 * 109.50377 * 177.59436 * 6 5 3 33 33 H 1.09003 * 109.50316 * 297.67431 * 6 5 3 34 34 H 1.09000 * 109.46159 * 60.85546 * 7 6 5 35 35 H 1.09000 * 109.46461 * 180.82902 * 7 6 5 36 36 H 1.09006 * 109.47095 * 185.74417 * 9 8 7 37 37 H 1.08994 * 109.47117 * 305.74495 * 9 8 7 38 38 H 1.09008 * 109.47411 * 299.99935 * 10 9 8 39 39 H 1.09003 * 109.47446 * 59.99598 * 10 9 8 40 40 H 1.09003 * 109.46954 * 89.99786 * 14 13 11 41 41 H 1.08993 * 109.47223 * 209.99921 * 14 13 11 42 42 H 1.09003 * 109.46642 * 330.00381 * 14 13 11 43 43 H 1.08996 * 109.46844 * 210.00141 * 15 13 11 44 44 H 1.08999 * 109.46924 * 330.00408 * 15 13 11 45 45 H 0.97001 * 119.99797 * 179.97438 * 19 18 16 46 46 H 1.09001 * 109.46294 * 178.26219 * 24 8 7 47 47 H 1.09005 * 109.46534 * 58.30014 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6073 1.9821 0.8424 5 6 1.6353 2.1278 -1.3081 6 6 2.2006 3.5507 -1.3259 7 6 3.7215 3.4930 -1.1662 8 7 4.0572 2.8286 0.0996 9 6 5.5035 2.8773 0.3522 10 6 5.9346 4.3290 0.5702 11 6 7.4184 4.3790 0.8287 12 8 8.0672 3.3544 0.8382 13 7 8.0244 5.5625 1.0493 14 6 7.2407 6.8002 1.0385 15 6 9.4669 5.6110 1.3012 16 6 10.2001 5.7654 -0.0064 17 1 9.6471 5.8220 -0.9322 18 6 11.5771 5.8353 -0.0205 19 7 12.2506 5.7668 1.1071 20 14 12.4860 6.0258 -1.6412 21 1 12.0562 7.2827 -2.3049 22 1 13.9480 6.0765 -1.3858 23 1 12.1764 4.8704 -2.5212 24 6 3.5655 1.4451 0.1208 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.5482 2.1668 -1.3777 31 1 2.0344 1.5666 -2.1530 32 1 1.9520 4.0292 -2.2732 33 1 1.7699 4.1236 -0.5047 34 1 4.1527 2.9323 -1.9955 35 1 4.1251 4.5056 -1.1638 36 1 5.7370 2.2916 1.2414 37 1 6.0360 2.4649 -0.5047 38 1 5.7011 4.9148 -0.3190 39 1 5.4020 4.7415 1.4271 40 1 6.8745 7.0071 2.0440 41 1 7.8693 7.6253 0.7038 42 1 6.3952 6.6888 0.3596 43 1 9.6944 6.4586 1.9477 44 1 9.7820 4.6880 1.7878 45 1 13.2193 5.8156 1.0971 46 1 3.8565 0.9706 1.0579 47 1 3.9969 0.8935 -0.7146 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036169548.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:57 Heat of formation + Delta-G solvation = -56.349958 kcal Electronic energy + Delta-G solvation = -22645.022478 eV Core-core repulsion = 19440.744845 eV Total energy + Delta-G solvation = -3204.277633 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.61940 -38.73145 -35.56305 -34.73282 -32.83149 -32.53929 -30.70127 -29.17821 -27.66228 -25.84746 -25.10774 -23.76270 -22.92562 -22.04672 -20.53359 -19.83495 -18.27234 -16.66139 -16.49731 -15.58191 -15.43887 -15.27692 -15.05427 -14.65395 -14.39634 -14.34627 -13.98146 -13.62509 -13.35189 -13.09352 -12.68343 -12.36296 -12.21572 -12.17490 -11.99503 -11.84530 -11.69329 -11.46152 -11.33380 -11.15084 -11.08495 -10.98490 -10.85280 -10.67490 -10.54404 -10.29623 -10.25157 -10.14239 -9.62450 -8.85016 -8.41893 -8.32523 -7.60460 -6.02714 -4.07483 3.32285 3.36601 3.38781 3.50029 3.67448 4.17869 4.46406 4.51455 4.61537 4.67095 4.89334 5.01749 5.04852 5.20775 5.24738 5.27754 5.31021 5.34555 5.43463 5.44528 5.46067 5.58335 5.65435 5.67098 5.70711 5.74967 5.78546 5.86507 5.90019 5.93951 5.96482 6.01130 6.13222 6.16337 6.17815 6.24969 6.29590 7.05927 7.07934 7.11973 7.47047 7.57499 7.93799 8.25605 8.46335 8.92028 9.13889 9.57420 11.05333 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030848 B = 0.002947 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.472951 B = 9499.863937 C = 9529.833291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.084 4.084 4 H 0.078 0.922 5 C -0.116 4.116 6 C -0.116 4.116 7 C 0.049 3.951 8 N -0.540 5.540 9 C 0.073 3.927 10 C -0.134 4.134 11 C 0.504 3.496 12 O -0.546 6.546 13 N -0.604 5.604 14 C 0.085 3.915 15 C 0.245 3.755 16 C -0.526 4.526 17 H 0.056 0.944 18 C 0.060 3.940 19 N -0.895 5.895 20 Si 0.898 3.102 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.277 1.277 24 C 0.061 3.939 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.032 0.968 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.042 0.958 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.044 0.956 41 H 0.072 0.928 42 H 0.057 0.943 43 H 0.032 0.968 44 H 0.043 0.957 45 H 0.264 0.736 46 H 0.074 0.926 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.652 -5.082 -2.657 24.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.103 4.103 4 H 0.097 0.903 5 C -0.154 4.154 6 C -0.154 4.154 7 C -0.078 4.078 8 N -0.265 5.265 9 C -0.055 4.055 10 C -0.175 4.175 11 C 0.290 3.710 12 O -0.424 6.424 13 N -0.336 5.336 14 C -0.060 4.060 15 C 0.125 3.875 16 C -0.565 4.565 17 H 0.074 0.926 18 C -0.142 4.142 19 N -0.534 5.534 20 Si 0.726 3.274 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.067 4.067 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.050 0.950 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.060 0.940 38 H 0.103 0.897 39 H 0.111 0.889 40 H 0.063 0.937 41 H 0.091 0.909 42 H 0.075 0.925 43 H 0.050 0.950 44 H 0.061 0.939 45 H 0.073 0.927 46 H 0.093 0.907 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -23.318 -5.345 -2.189 24.023 hybrid contribution 1.045 -0.140 -1.566 1.888 sum -22.273 -5.484 -3.755 23.244 Atomic orbital electron populations 1.21794 0.95822 1.01384 1.01893 1.21539 0.95927 0.96310 1.02016 1.21217 0.94848 0.95674 0.98538 0.90321 1.21678 1.00416 0.95994 0.97303 1.21582 0.95060 0.97003 1.01760 1.22164 0.95971 0.99605 0.90102 1.61887 1.14639 1.16421 1.33509 1.21780 0.85648 0.96188 1.01866 1.21650 0.94137 0.98167 1.03536 1.20322 0.88990 0.83931 0.77720 1.90659 1.66785 1.33393 1.51588 1.48165 1.11119 1.05156 1.69178 1.21627 0.95842 0.88351 1.00151 1.19276 0.72996 0.98416 0.96767 1.21397 0.91488 1.50378 0.93204 0.92609 1.24944 0.97423 0.95182 0.96621 1.69927 1.07499 1.50259 1.25740 0.86557 0.78495 0.78613 0.83734 1.20266 1.21153 1.20213 1.22100 0.94681 0.88880 1.01021 0.92986 0.92720 0.92591 0.92154 0.91871 0.91786 0.92427 0.91740 0.91128 0.95000 0.90436 0.90021 0.93980 0.89697 0.88900 0.93735 0.90896 0.92453 0.95048 0.93876 0.92672 0.90734 0.94984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.67 37.16 0.36 -0.64 16 2 C -0.12 -0.91 5.41 -26.73 -0.14 -1.05 16 3 C -0.08 -0.74 2.35 -90.54 -0.21 -0.95 16 4 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 5 C -0.12 -0.97 4.98 -26.61 -0.13 -1.10 16 6 C -0.12 -1.03 6.09 -26.65 -0.16 -1.19 16 7 C 0.05 0.54 5.29 -3.83 -0.02 0.52 16 8 N -0.54 -6.57 4.66 -234.68 -1.09 -7.66 16 9 C 0.07 1.08 4.25 -3.83 -0.02 1.06 16 10 C -0.13 -2.04 4.18 -27.88 -0.12 -2.16 16 11 C 0.50 10.66 7.67 -10.99 -0.08 10.58 16 12 O -0.55 -13.97 15.56 5.56 0.09 -13.89 16 13 N -0.60 -13.11 2.86 -182.95 -0.52 -13.63 16 14 C 0.08 1.36 10.24 59.85 0.61 1.97 16 15 C 0.24 6.55 5.16 -5.19 -0.03 6.52 16 16 C -0.53 -15.18 9.39 -34.44 -0.32 -15.50 16 17 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 18 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 19 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 20 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 C 0.06 0.66 4.74 -3.84 -0.02 0.64 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.35 6.62 -51.93 -0.34 0.01 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.47 6.70 -51.93 -0.35 0.12 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.84 6.21 -51.93 -0.32 0.52 16 36 H 0.08 1.28 7.95 -51.93 -0.41 0.86 16 37 H 0.04 0.69 8.08 -51.93 -0.42 0.27 16 38 H 0.08 1.17 5.69 -51.92 -0.30 0.87 16 39 H 0.09 1.26 8.11 -51.93 -0.42 0.84 16 40 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 42 H 0.06 0.75 6.44 -51.93 -0.33 0.42 16 43 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 44 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 45 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 46 H 0.07 0.81 8.02 -51.93 -0.42 0.39 16 47 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 365.16 15.07 5.50 5.50 Total: -1.00 -32.71 365.16 -9.43 -42.13 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -8.73 Total: -3.68 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -0.38 Total: 0.36 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: -0.88 Total: -47.52 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: 0.09 Total: -13.89 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.71 -9.43 -42.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036169548.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.219 kcal (2) G-P(sol) polarization free energy of solvation -32.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds